Wall clock time and date at job start Mon Mar 30 2020 03:13:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46498 * 1
3 3 C 1.37096 * 119.99621 * 2 1
4 4 H 1.08005 * 119.99413 * 213.11429 * 3 2 1
5 5 C 1.38945 * 120.00767 * 33.11563 * 3 2 1
6 6 N 1.31414 * 119.99375 * 5.77707 * 5 3 2
7 7 Si 1.86794 * 120.00398 * 185.77705 * 5 3 2
8 8 H 1.48496 * 109.47219 * 0.02562 * 7 5 3
9 9 H 1.48508 * 109.46975 * 119.99928 * 7 5 3
10 10 H 1.48498 * 109.47239 * 239.99621 * 7 5 3
11 11 C 1.34781 * 120.00110 * 179.97438 * 2 1 3
12 12 O 1.21291 * 119.99604 * 180.02562 * 11 2 1
13 13 C 1.50697 * 119.99939 * 0.02562 * 11 2 1
14 14 H 1.08996 * 115.56205 * 282.58153 * 13 11 2
15 15 C 1.53075 * 117.51246 * 136.87983 * 13 11 2
16 16 C 1.52996 * 59.98346 * 252.52342 * 15 13 11
17 17 H 1.09003 * 117.49572 * 252.49498 * 16 15 13
18 18 C 1.52999 * 117.49948 * 107.50563 * 16 15 13
19 19 C 1.53007 * 109.47277 * 86.07661 * 18 16 15
20 20 C 1.53004 * 109.46979 * 326.07623 * 18 16 15
21 21 C 1.52997 * 109.47196 * 206.07663 * 18 16 15
22 22 H 1.09000 * 109.47764 * 274.89332 * 1 2 3
23 23 H 1.08998 * 109.46838 * 34.89991 * 1 2 3
24 24 H 1.09009 * 109.46570 * 154.88990 * 1 2 3
25 25 H 0.97009 * 119.99641 * 180.02562 * 6 5 3
26 26 H 1.08997 * 117.49407 * 145.03428 * 15 13 11
27 27 H 1.09003 * 117.53317 * 359.97438 * 15 13 11
28 28 H 1.08999 * 109.47026 * 60.00297 * 19 18 16
29 29 H 1.09000 * 109.46696 * 299.99950 * 19 18 16
30 30 H 1.09002 * 109.46854 * 180.02562 * 19 18 16
31 31 H 1.09001 * 109.47114 * 208.59046 * 20 18 16
32 32 H 1.08998 * 109.47353 * 328.59727 * 20 18 16
33 33 H 1.09002 * 109.46542 * 88.59585 * 20 18 16
34 34 H 1.08997 * 109.47116 * 339.10947 * 21 18 16
35 35 H 1.09008 * 109.46971 * 99.10806 * 21 18 16
36 36 H 1.08999 * 109.47493 * 219.10735 * 21 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1504 1.1873 0.0000
4 1 3.0989 1.2633 -0.5110
5 6 1.6250 2.2930 0.6573
6 7 0.5298 2.1723 1.3735
7 14 2.4754 3.9507 0.5232
8 1 3.6797 3.8211 -0.3358
9 1 1.5431 4.9380 -0.0780
10 1 2.8789 4.4110 1.8761
11 6 2.1389 -1.1672 0.0005
12 8 3.3518 -1.1671 0.0010
13 6 1.3854 -2.4723 0.0005
14 1 0.9644 -2.7723 0.9601
15 6 1.8904 -3.5804 -0.9270
16 6 0.5976 -2.8332 -1.2604
17 1 -0.3419 -3.3703 -1.1304
18 6 0.6351 -1.8415 -2.4249
19 6 0.3689 -2.5840 -3.7360
20 6 2.0122 -1.1775 -2.4852
21 6 -0.4385 -0.7712 -2.2180
22 1 -0.3634 0.0877 1.0239
23 1 -0.3633 0.8428 -0.5880
24 1 -0.3633 -0.9307 -0.4362
25 1 0.1627 2.9443 1.8322
26 1 1.8015 -4.6089 -0.5772
27 1 2.7674 -3.3656 -1.5377
28 1 -0.6122 -3.0569 -3.6930
29 1 1.1338 -3.3465 -3.8833
30 1 0.3961 -1.8775 -4.5656
31 1 1.9166 -0.1811 -2.9166
32 1 2.4226 -1.0998 -1.4785
33 1 2.6786 -1.7788 -3.1038
34 1 -1.1975 -1.1459 -1.5313
35 1 0.0186 0.1258 -1.8000
36 1 -0.9013 -0.5309 -3.1751
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000699768726.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:13:04
Heat of formation + Delta-G solvation = 66.974591 kcal
Electronic energy + Delta-G solvation = -17211.493391 eV
Core-core repulsion = 14700.139899 eV
Total energy + Delta-G solvation = -2511.353492 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 225.147 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-40.68715 -36.71661 -35.06679 -33.30585 -31.57867 -28.42481 -26.79657 -25.62498
-24.35403 -22.88190 -22.19815 -18.81708 -18.13557 -16.99725 -15.94844 -15.32759
-14.54662 -14.23749 -14.14187 -13.85132 -13.51884 -12.89095 -12.42027 -12.33346
-12.12024 -11.67154 -11.32699 -11.17842 -11.09152 -10.68239 -10.55427 -10.47592
-10.30663 -10.00519 -9.86807 -9.62451 -9.33185 -9.07584 -8.87133 -8.33891
-7.47675 -6.23016 -3.92201 3.17506 3.27592 3.33947 3.84213 4.12464
4.23492 4.80827 5.08332 5.13888 5.26927 5.36397 5.47681 5.65535
5.70395 5.90627 5.95872 6.08586 6.09838 6.17869 6.23469 6.32673
6.38770 6.50548 6.60331 6.63236 6.74917 6.85930 6.88209 6.99788
7.29657 7.38249 7.60448 8.23318 8.54079 9.21004 9.43820 10.02110
10.77913
Molecular weight = 225.15amu
Principal moments of inertia in cm(-1)
A = 0.035721 B = 0.010130 C = 0.009540
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 783.670266 B = 2763.323074 C = 2934.293787
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.079 3.921
2 N -0.445 5.445
3 C -0.306 4.306
4 H 0.093 0.907
5 C 0.035 3.965
6 N -0.881 5.881
7 Si 0.922 3.078
8 H -0.268 1.268
9 H -0.282 1.282
10 H -0.282 1.282
11 C 0.505 3.495
12 O -0.592 6.592
13 C -0.171 4.171
14 H 0.115 0.885
15 C -0.155 4.155
16 C -0.133 4.133
17 H 0.102 0.898
18 C -0.036 4.036
19 C -0.132 4.132
20 C -0.205 4.205
21 C -0.174 4.174
22 H 0.050 0.950
23 H 0.063 0.937
24 H 0.071 0.929
25 H 0.265 0.735
26 H 0.091 0.909
27 H 0.099 0.901
28 H 0.048 0.952
29 H 0.050 0.950
30 H 0.051 0.949
31 H 0.052 0.948
32 H 0.132 0.868
33 H 0.037 0.963
34 H 0.061 0.939
35 H 0.103 0.897
36 H 0.037 0.963
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.448 -6.705 -5.805 9.922
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.064 4.064
2 N -0.163 5.163
3 C -0.435 4.435
4 H 0.111 0.889
5 C -0.169 4.169
6 N -0.519 5.519
7 Si 0.749 3.251
8 H -0.192 1.192
9 H -0.208 1.208
10 H -0.207 1.207
11 C 0.297 3.703
12 O -0.481 6.481
13 C -0.192 4.192
14 H 0.133 0.867
15 C -0.193 4.193
16 C -0.151 4.151
17 H 0.120 0.880
18 C -0.036 4.036
19 C -0.190 4.190
20 C -0.261 4.261
21 C -0.230 4.230
22 H 0.068 0.932
23 H 0.082 0.918
24 H 0.089 0.911
25 H 0.076 0.924
26 H 0.110 0.890
27 H 0.118 0.882
28 H 0.067 0.933
29 H 0.069 0.931
30 H 0.070 0.930
31 H 0.071 0.929
32 H 0.149 0.851
33 H 0.056 0.944
34 H 0.080 0.920
35 H 0.122 0.878
36 H 0.056 0.944
Dipole moment (debyes) X Y Z Total
from point charges -4.019 -6.532 -5.692 9.551
hybrid contribution 0.073 0.842 0.072 0.849
sum -3.947 -5.689 -5.620 8.918
Atomic orbital electron populations
1.22872 0.81825 0.99971 1.01714 1.43610 1.05439 1.04215 1.63030
1.19567 1.05915 0.86180 1.31789 0.88932 1.25437 0.96498 1.00173
0.94770 1.69957 1.20871 1.30773 1.30330 0.85927 0.79400 0.81627
0.78153 1.19233 1.20791 1.20749 1.18437 0.87510 0.84190 0.80126
1.90594 1.13773 1.87036 1.56713 1.22446 1.04157 0.96807 0.95801
0.86662 1.22973 0.98146 0.95634 1.02518 1.22511 0.95615 1.01227
0.95770 0.88004 1.20038 0.96897 0.93924 0.92745 1.21880 1.00688
0.99728 0.96661 1.23399 0.95408 0.99425 1.07904 1.23347 0.98210
1.00999 1.00472 0.93190 0.91836 0.91145 0.92440 0.89049 0.88214
0.93268 0.93125 0.93023 0.92854 0.85127 0.94361 0.92040 0.87833
0.94367
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 1.73 5.70 59.85 0.34 2.07 16
2 N -0.44 -11.12 1.91 -164.74 -0.31 -11.44 16
3 C -0.31 -8.43 9.04 -14.94 -0.13 -8.56 16
4 H 0.09 2.67 7.60 -52.48 -0.40 2.27 16
5 C 0.03 0.92 5.25 -17.47 -0.09 0.83 16
6 N -0.88 -23.64 10.98 55.50 0.61 -23.03 16
7 Si 0.92 20.93 29.56 -169.99 -5.02 15.91 16
8 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16
9 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16
10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16
11 C 0.50 12.29 3.92 -10.98 -0.04 12.25 16
12 O -0.59 -16.52 15.79 5.55 0.09 -16.43 16
13 C -0.17 -3.27 5.01 -91.74 -0.46 -3.73 16
14 H 0.12 2.04 8.14 -51.93 -0.42 1.62 16
15 C -0.16 -2.55 9.52 -26.69 -0.25 -2.81 16
16 C -0.13 -2.12 4.00 -90.62 -0.36 -2.49 16
17 H 0.10 1.40 8.14 -51.93 -0.42 0.97 16
18 C -0.04 -0.60 0.71 -154.50 -0.11 -0.70 16
19 C -0.13 -1.82 8.08 37.16 0.30 -1.52 16
20 C -0.21 -4.07 6.76 37.16 0.25 -3.82 16
21 C -0.17 -2.88 6.89 37.16 0.26 -2.63 16
22 H 0.05 1.19 7.19 -51.93 -0.37 0.82 16
23 H 0.06 1.44 6.24 -51.93 -0.32 1.11 16
24 H 0.07 1.32 2.10 -52.96 -0.11 1.21 16
25 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16
26 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16
27 H 0.10 1.79 7.01 -51.93 -0.36 1.42 16
28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16
29 H 0.05 0.67 8.11 -51.93 -0.42 0.25 16
30 H 0.05 0.69 8.13 -51.93 -0.42 0.27 16
31 H 0.05 1.09 7.75 -51.93 -0.40 0.69 16
32 H 0.13 3.01 1.30 -119.77 -0.16 2.85 16
33 H 0.04 0.71 7.61 -51.93 -0.39 0.31 16
34 H 0.06 0.94 6.07 -51.93 -0.32 0.62 16
35 H 0.10 2.03 3.50 -52.15 -0.18 1.85 16
36 H 0.04 0.56 7.71 -51.93 -0.40 0.16 16
LS Contribution 265.62 15.07 4.00 4.00
Total: -1.00 -29.75 265.62 -6.04 -35.78
By element:
Atomic # 1 Polarization: 11.42 SS G_CDS: -5.09 Total: 6.32 kcal
Atomic # 6 Polarization: -10.82 SS G_CDS: -0.31 Total: -11.12 kcal
Atomic # 7 Polarization: -34.76 SS G_CDS: 0.29 Total: -34.47 kcal
Atomic # 8 Polarization: -16.52 SS G_CDS: 0.09 Total: -16.43 kcal
Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal
Total LS contribution 4.00 Total: 4.00 kcal
Total: -29.75 -6.04 -35.78 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000699768726.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 102.759 kcal
(2) G-P(sol) polarization free energy of solvation -29.745 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.013 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.038 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.784 kcal
(6) G-S(sol) free energy of system = (1) + (5) 66.975 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds