Wall clock time and date at job start Mon Mar 30 2020 03:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37096 * 119.99621 * 2 1 4 4 H 1.08005 * 119.99413 * 213.11429 * 3 2 1 5 5 C 1.38945 * 120.00767 * 33.11563 * 3 2 1 6 6 N 1.31414 * 119.99375 * 5.77707 * 5 3 2 7 7 Si 1.86794 * 120.00398 * 185.77705 * 5 3 2 8 8 H 1.48496 * 109.47219 * 0.02562 * 7 5 3 9 9 H 1.48508 * 109.46975 * 119.99928 * 7 5 3 10 10 H 1.48498 * 109.47239 * 239.99621 * 7 5 3 11 11 C 1.34781 * 120.00110 * 179.97438 * 2 1 3 12 12 O 1.21291 * 119.99604 * 180.02562 * 11 2 1 13 13 C 1.50697 * 119.99939 * 0.02562 * 11 2 1 14 14 H 1.08996 * 115.56205 * 282.58153 * 13 11 2 15 15 C 1.53075 * 117.51246 * 136.87983 * 13 11 2 16 16 C 1.52996 * 59.98346 * 252.52342 * 15 13 11 17 17 H 1.09003 * 117.49572 * 252.49498 * 16 15 13 18 18 C 1.52999 * 117.49948 * 107.50563 * 16 15 13 19 19 C 1.53007 * 109.47277 * 86.07661 * 18 16 15 20 20 C 1.53004 * 109.46979 * 326.07623 * 18 16 15 21 21 C 1.52997 * 109.47196 * 206.07663 * 18 16 15 22 22 H 1.09000 * 109.47764 * 274.89332 * 1 2 3 23 23 H 1.08998 * 109.46838 * 34.89991 * 1 2 3 24 24 H 1.09009 * 109.46570 * 154.88990 * 1 2 3 25 25 H 0.97009 * 119.99641 * 180.02562 * 6 5 3 26 26 H 1.08997 * 117.49407 * 145.03428 * 15 13 11 27 27 H 1.09003 * 117.53317 * 359.97438 * 15 13 11 28 28 H 1.08999 * 109.47026 * 60.00297 * 19 18 16 29 29 H 1.09000 * 109.46696 * 299.99950 * 19 18 16 30 30 H 1.09002 * 109.46854 * 180.02562 * 19 18 16 31 31 H 1.09001 * 109.47114 * 208.59046 * 20 18 16 32 32 H 1.08998 * 109.47353 * 328.59727 * 20 18 16 33 33 H 1.09002 * 109.46542 * 88.59585 * 20 18 16 34 34 H 1.08997 * 109.47116 * 339.10947 * 21 18 16 35 35 H 1.09008 * 109.46971 * 99.10806 * 21 18 16 36 36 H 1.08999 * 109.47493 * 219.10735 * 21 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.0989 1.2633 -0.5110 5 6 1.6250 2.2930 0.6573 6 7 0.5298 2.1723 1.3735 7 14 2.4754 3.9507 0.5232 8 1 3.6797 3.8211 -0.3358 9 1 1.5431 4.9380 -0.0780 10 1 2.8789 4.4110 1.8761 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1671 0.0010 13 6 1.3854 -2.4723 0.0005 14 1 0.9644 -2.7723 0.9601 15 6 1.8904 -3.5804 -0.9270 16 6 0.5976 -2.8332 -1.2604 17 1 -0.3419 -3.3703 -1.1304 18 6 0.6351 -1.8415 -2.4249 19 6 0.3689 -2.5840 -3.7360 20 6 2.0122 -1.1775 -2.4852 21 6 -0.4385 -0.7712 -2.2180 22 1 -0.3634 0.0877 1.0239 23 1 -0.3633 0.8428 -0.5880 24 1 -0.3633 -0.9307 -0.4362 25 1 0.1627 2.9443 1.8322 26 1 1.8015 -4.6089 -0.5772 27 1 2.7674 -3.3656 -1.5377 28 1 -0.6122 -3.0569 -3.6930 29 1 1.1338 -3.3465 -3.8833 30 1 0.3961 -1.8775 -4.5656 31 1 1.9166 -0.1811 -2.9166 32 1 2.4226 -1.0998 -1.4785 33 1 2.6786 -1.7788 -3.1038 34 1 -1.1975 -1.1459 -1.5313 35 1 0.0186 0.1258 -1.8000 36 1 -0.9013 -0.5309 -3.1751 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699768726.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:04 Heat of formation + Delta-G solvation = 66.974591 kcal Electronic energy + Delta-G solvation = -17211.493391 eV Core-core repulsion = 14700.139899 eV Total energy + Delta-G solvation = -2511.353492 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.68715 -36.71661 -35.06679 -33.30585 -31.57867 -28.42481 -26.79657 -25.62498 -24.35403 -22.88190 -22.19815 -18.81708 -18.13557 -16.99725 -15.94844 -15.32759 -14.54662 -14.23749 -14.14187 -13.85132 -13.51884 -12.89095 -12.42027 -12.33346 -12.12024 -11.67154 -11.32699 -11.17842 -11.09152 -10.68239 -10.55427 -10.47592 -10.30663 -10.00519 -9.86807 -9.62451 -9.33185 -9.07584 -8.87133 -8.33891 -7.47675 -6.23016 -3.92201 3.17506 3.27592 3.33947 3.84213 4.12464 4.23492 4.80827 5.08332 5.13888 5.26927 5.36397 5.47681 5.65535 5.70395 5.90627 5.95872 6.08586 6.09838 6.17869 6.23469 6.32673 6.38770 6.50548 6.60331 6.63236 6.74917 6.85930 6.88209 6.99788 7.29657 7.38249 7.60448 8.23318 8.54079 9.21004 9.43820 10.02110 10.77913 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.035721 B = 0.010130 C = 0.009540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.670266 B = 2763.323074 C = 2934.293787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.445 5.445 3 C -0.306 4.306 4 H 0.093 0.907 5 C 0.035 3.965 6 N -0.881 5.881 7 Si 0.922 3.078 8 H -0.268 1.268 9 H -0.282 1.282 10 H -0.282 1.282 11 C 0.505 3.495 12 O -0.592 6.592 13 C -0.171 4.171 14 H 0.115 0.885 15 C -0.155 4.155 16 C -0.133 4.133 17 H 0.102 0.898 18 C -0.036 4.036 19 C -0.132 4.132 20 C -0.205 4.205 21 C -0.174 4.174 22 H 0.050 0.950 23 H 0.063 0.937 24 H 0.071 0.929 25 H 0.265 0.735 26 H 0.091 0.909 27 H 0.099 0.901 28 H 0.048 0.952 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.132 0.868 33 H 0.037 0.963 34 H 0.061 0.939 35 H 0.103 0.897 36 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.448 -6.705 -5.805 9.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.163 5.163 3 C -0.435 4.435 4 H 0.111 0.889 5 C -0.169 4.169 6 N -0.519 5.519 7 Si 0.749 3.251 8 H -0.192 1.192 9 H -0.208 1.208 10 H -0.207 1.207 11 C 0.297 3.703 12 O -0.481 6.481 13 C -0.192 4.192 14 H 0.133 0.867 15 C -0.193 4.193 16 C -0.151 4.151 17 H 0.120 0.880 18 C -0.036 4.036 19 C -0.190 4.190 20 C -0.261 4.261 21 C -0.230 4.230 22 H 0.068 0.932 23 H 0.082 0.918 24 H 0.089 0.911 25 H 0.076 0.924 26 H 0.110 0.890 27 H 0.118 0.882 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.149 0.851 33 H 0.056 0.944 34 H 0.080 0.920 35 H 0.122 0.878 36 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -4.019 -6.532 -5.692 9.551 hybrid contribution 0.073 0.842 0.072 0.849 sum -3.947 -5.689 -5.620 8.918 Atomic orbital electron populations 1.22872 0.81825 0.99971 1.01714 1.43610 1.05439 1.04215 1.63030 1.19567 1.05915 0.86180 1.31789 0.88932 1.25437 0.96498 1.00173 0.94770 1.69957 1.20871 1.30773 1.30330 0.85927 0.79400 0.81627 0.78153 1.19233 1.20791 1.20749 1.18437 0.87510 0.84190 0.80126 1.90594 1.13773 1.87036 1.56713 1.22446 1.04157 0.96807 0.95801 0.86662 1.22973 0.98146 0.95634 1.02518 1.22511 0.95615 1.01227 0.95770 0.88004 1.20038 0.96897 0.93924 0.92745 1.21880 1.00688 0.99728 0.96661 1.23399 0.95408 0.99425 1.07904 1.23347 0.98210 1.00999 1.00472 0.93190 0.91836 0.91145 0.92440 0.89049 0.88214 0.93268 0.93125 0.93023 0.92854 0.85127 0.94361 0.92040 0.87833 0.94367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.73 5.70 59.85 0.34 2.07 16 2 N -0.44 -11.12 1.91 -164.74 -0.31 -11.44 16 3 C -0.31 -8.43 9.04 -14.94 -0.13 -8.56 16 4 H 0.09 2.67 7.60 -52.48 -0.40 2.27 16 5 C 0.03 0.92 5.25 -17.47 -0.09 0.83 16 6 N -0.88 -23.64 10.98 55.50 0.61 -23.03 16 7 Si 0.92 20.93 29.56 -169.99 -5.02 15.91 16 8 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 9 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 C 0.50 12.29 3.92 -10.98 -0.04 12.25 16 12 O -0.59 -16.52 15.79 5.55 0.09 -16.43 16 13 C -0.17 -3.27 5.01 -91.74 -0.46 -3.73 16 14 H 0.12 2.04 8.14 -51.93 -0.42 1.62 16 15 C -0.16 -2.55 9.52 -26.69 -0.25 -2.81 16 16 C -0.13 -2.12 4.00 -90.62 -0.36 -2.49 16 17 H 0.10 1.40 8.14 -51.93 -0.42 0.97 16 18 C -0.04 -0.60 0.71 -154.50 -0.11 -0.70 16 19 C -0.13 -1.82 8.08 37.16 0.30 -1.52 16 20 C -0.21 -4.07 6.76 37.16 0.25 -3.82 16 21 C -0.17 -2.88 6.89 37.16 0.26 -2.63 16 22 H 0.05 1.19 7.19 -51.93 -0.37 0.82 16 23 H 0.06 1.44 6.24 -51.93 -0.32 1.11 16 24 H 0.07 1.32 2.10 -52.96 -0.11 1.21 16 25 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 26 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.10 1.79 7.01 -51.93 -0.36 1.42 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.67 8.11 -51.93 -0.42 0.25 16 30 H 0.05 0.69 8.13 -51.93 -0.42 0.27 16 31 H 0.05 1.09 7.75 -51.93 -0.40 0.69 16 32 H 0.13 3.01 1.30 -119.77 -0.16 2.85 16 33 H 0.04 0.71 7.61 -51.93 -0.39 0.31 16 34 H 0.06 0.94 6.07 -51.93 -0.32 0.62 16 35 H 0.10 2.03 3.50 -52.15 -0.18 1.85 16 36 H 0.04 0.56 7.71 -51.93 -0.40 0.16 16 LS Contribution 265.62 15.07 4.00 4.00 Total: -1.00 -29.75 265.62 -6.04 -35.78 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -5.09 Total: 6.32 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -0.31 Total: -11.12 kcal Atomic # 7 Polarization: -34.76 SS G_CDS: 0.29 Total: -34.47 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: 0.09 Total: -16.43 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -29.75 -6.04 -35.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699768726.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.759 kcal (2) G-P(sol) polarization free energy of solvation -29.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds