Wall clock time and date at job start Mon Mar 30 2020 03:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37096 * 119.99621 * 2 1 4 4 H 1.08005 * 119.99413 * 213.11429 * 3 2 1 5 5 C 1.38945 * 120.00767 * 33.11563 * 3 2 1 6 6 N 1.31414 * 119.99375 * 5.77707 * 5 3 2 7 7 Si 1.86794 * 120.00398 * 185.77705 * 5 3 2 8 8 H 1.48496 * 109.47219 * 0.02562 * 7 5 3 9 9 H 1.48508 * 109.46975 * 119.99928 * 7 5 3 10 10 H 1.48498 * 109.47239 * 239.99621 * 7 5 3 11 11 C 1.34781 * 120.00110 * 179.97438 * 2 1 3 12 12 O 1.21291 * 119.99604 * 180.02562 * 11 2 1 13 13 C 1.50697 * 119.99939 * 0.02562 * 11 2 1 14 14 H 1.08996 * 115.56205 * 282.58153 * 13 11 2 15 15 C 1.53075 * 117.51246 * 136.87983 * 13 11 2 16 16 C 1.52996 * 59.98346 * 252.52342 * 15 13 11 17 17 H 1.09003 * 117.49572 * 252.49498 * 16 15 13 18 18 C 1.52999 * 117.49948 * 107.50563 * 16 15 13 19 19 C 1.53007 * 109.47277 * 86.07661 * 18 16 15 20 20 C 1.53004 * 109.46979 * 326.07623 * 18 16 15 21 21 C 1.52997 * 109.47196 * 206.07663 * 18 16 15 22 22 H 1.09000 * 109.47764 * 274.89332 * 1 2 3 23 23 H 1.08998 * 109.46838 * 34.89991 * 1 2 3 24 24 H 1.09009 * 109.46570 * 154.88990 * 1 2 3 25 25 H 0.97009 * 119.99641 * 180.02562 * 6 5 3 26 26 H 1.08997 * 117.49407 * 145.03428 * 15 13 11 27 27 H 1.09003 * 117.53317 * 359.97438 * 15 13 11 28 28 H 1.08999 * 109.47026 * 60.00297 * 19 18 16 29 29 H 1.09000 * 109.46696 * 299.99950 * 19 18 16 30 30 H 1.09002 * 109.46854 * 180.02562 * 19 18 16 31 31 H 1.09001 * 109.47114 * 208.59046 * 20 18 16 32 32 H 1.08998 * 109.47353 * 328.59727 * 20 18 16 33 33 H 1.09002 * 109.46542 * 88.59585 * 20 18 16 34 34 H 1.08997 * 109.47116 * 339.10947 * 21 18 16 35 35 H 1.09008 * 109.46971 * 99.10806 * 21 18 16 36 36 H 1.08999 * 109.47493 * 219.10735 * 21 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.0989 1.2633 -0.5110 5 6 1.6250 2.2930 0.6573 6 7 0.5298 2.1723 1.3735 7 14 2.4754 3.9507 0.5232 8 1 3.6797 3.8211 -0.3358 9 1 1.5431 4.9380 -0.0780 10 1 2.8789 4.4110 1.8761 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1671 0.0010 13 6 1.3854 -2.4723 0.0005 14 1 0.9644 -2.7723 0.9601 15 6 1.8904 -3.5804 -0.9270 16 6 0.5976 -2.8332 -1.2604 17 1 -0.3419 -3.3703 -1.1304 18 6 0.6351 -1.8415 -2.4249 19 6 0.3689 -2.5840 -3.7360 20 6 2.0122 -1.1775 -2.4852 21 6 -0.4385 -0.7712 -2.2180 22 1 -0.3634 0.0877 1.0239 23 1 -0.3633 0.8428 -0.5880 24 1 -0.3633 -0.9307 -0.4362 25 1 0.1627 2.9443 1.8322 26 1 1.8015 -4.6089 -0.5772 27 1 2.7674 -3.3656 -1.5377 28 1 -0.6122 -3.0569 -3.6930 29 1 1.1338 -3.3465 -3.8833 30 1 0.3961 -1.8775 -4.5656 31 1 1.9166 -0.1811 -2.9166 32 1 2.4226 -1.0998 -1.4785 33 1 2.6786 -1.7788 -3.1038 34 1 -1.1975 -1.1459 -1.5313 35 1 0.0186 0.1258 -1.8000 36 1 -0.9013 -0.5309 -3.1751 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699768726.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:04 Heat of formation + Delta-G solvation = 49.158852 kcal Electronic energy + Delta-G solvation = -17212.265940 eV Core-core repulsion = 14700.139899 eV Total energy + Delta-G solvation = -2512.126040 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.31500 -38.37338 -36.94427 -34.75268 -33.57966 -30.02347 -28.28339 -27.39342 -26.00953 -24.44597 -23.62633 -20.50205 -19.61029 -18.92831 -17.65635 -17.19629 -16.17155 -16.02888 -15.65093 -15.42225 -15.15628 -14.36922 -14.10350 -13.67550 -13.61213 -13.20787 -13.03984 -12.89121 -12.69292 -12.46723 -12.16204 -12.02684 -11.96064 -11.48640 -11.34804 -11.03418 -10.96920 -10.84711 -10.55807 -10.19852 -9.46162 -8.25686 -6.02754 1.34386 1.38507 1.51701 2.03778 2.27397 2.77744 3.11098 3.14451 3.70896 3.91273 3.98935 4.10338 4.24839 4.30389 4.57020 4.60345 4.76884 4.80980 4.85123 4.92838 4.97563 5.03512 5.08791 5.15128 5.24802 5.28724 5.38574 5.45414 5.49007 5.51477 5.65359 5.73338 6.17830 6.55972 7.20272 7.50475 8.08252 8.72878 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.035721 B = 0.010130 C = 0.009540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.670266 B = 2763.323074 C = 2934.293787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.456 5.456 3 C -0.335 4.335 4 H 0.063 0.937 5 C -0.001 4.001 6 N -0.897 5.897 7 Si 0.982 3.018 8 H -0.275 1.275 9 H -0.266 1.266 10 H -0.277 1.277 11 C 0.501 3.499 12 O -0.643 6.643 13 C -0.200 4.200 14 H 0.133 0.867 15 C -0.143 4.143 16 C -0.110 4.110 17 H 0.145 0.855 18 C -0.038 4.038 19 C -0.126 4.126 20 C -0.204 4.204 21 C -0.173 4.173 22 H 0.027 0.973 23 H 0.051 0.949 24 H 0.108 0.892 25 H 0.270 0.730 26 H 0.129 0.871 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.031 0.969 32 H 0.105 0.895 33 H 0.041 0.959 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.335 -8.181 -6.574 12.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.174 5.174 3 C -0.463 4.463 4 H 0.081 0.919 5 C -0.203 4.203 6 N -0.536 5.536 7 Si 0.806 3.194 8 H -0.199 1.199 9 H -0.191 1.191 10 H -0.203 1.203 11 C 0.296 3.704 12 O -0.535 6.535 13 C -0.221 4.221 14 H 0.150 0.850 15 C -0.180 4.180 16 C -0.128 4.128 17 H 0.162 0.838 18 C -0.038 4.038 19 C -0.183 4.183 20 C -0.261 4.261 21 C -0.229 4.229 22 H 0.045 0.955 23 H 0.069 0.931 24 H 0.126 0.874 25 H 0.080 0.920 26 H 0.147 0.853 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.050 0.950 32 H 0.122 0.878 33 H 0.060 0.940 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.937 -8.010 -6.462 11.882 hybrid contribution 0.718 1.291 0.275 1.503 sum -5.219 -6.719 -6.187 10.520 Atomic orbital electron populations 1.22882 0.80109 1.01422 1.00228 1.43769 1.06487 1.03927 1.63189 1.19470 1.05718 0.88236 1.32920 0.91866 1.26122 0.97086 1.02917 0.94169 1.70036 1.21383 1.31783 1.30348 0.85044 0.78390 0.77898 0.78059 1.19933 1.19078 1.20307 1.19285 0.87280 0.85739 0.78135 1.90539 1.16256 1.88060 1.58674 1.22361 1.06529 0.94923 0.98268 0.84971 1.23073 0.97652 0.96622 1.00633 1.22738 0.97119 1.00168 0.92822 0.83778 1.20095 0.94421 0.94267 0.95047 1.21815 1.02375 0.99593 0.94530 1.23313 0.98063 0.98911 1.05786 1.23209 0.98351 0.99515 1.01840 0.95477 0.93079 0.87439 0.91984 0.85265 0.90354 0.90527 0.92630 0.92918 0.94959 0.87842 0.93956 0.90170 0.91478 0.92388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 4.20 5.70 127.77 0.73 4.93 16 2 N -0.46 -23.52 1.91 -793.48 -1.52 -25.04 16 3 C -0.33 -19.29 9.04 84.04 0.76 -18.53 16 4 H 0.06 3.91 7.60 -2.91 -0.02 3.89 16 5 C 0.00 -0.07 5.25 84.92 0.45 0.38 16 6 N -0.90 -48.79 10.98 21.66 0.24 -48.56 16 7 Si 0.98 43.81 29.56 68.60 2.03 45.84 16 8 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 9 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 10 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 11 C 0.50 24.97 3.92 87.66 0.34 25.31 16 12 O -0.64 -37.58 15.79 -3.06 -0.05 -37.63 16 13 C -0.20 -7.32 5.01 -11.52 -0.06 -7.38 16 14 H 0.13 4.38 8.14 -2.39 -0.02 4.36 16 15 C -0.14 -4.28 9.52 30.62 0.29 -3.99 16 16 C -0.11 -3.11 4.00 -10.80 -0.04 -3.15 16 17 H 0.14 2.99 8.14 -2.39 -0.02 2.97 16 18 C -0.04 -1.17 0.71 -52.18 -0.04 -1.21 16 19 C -0.13 -2.97 8.08 71.98 0.58 -2.39 16 20 C -0.20 -8.19 6.76 71.98 0.49 -7.71 16 21 C -0.17 -5.32 6.89 71.98 0.50 -4.83 16 22 H 0.03 1.30 7.19 -2.39 -0.02 1.28 16 23 H 0.05 2.35 6.24 -2.39 -0.01 2.34 16 24 H 0.11 3.84 2.10 -3.36 -0.01 3.84 16 25 H 0.27 13.80 8.31 -92.70 -0.77 13.03 16 26 H 0.13 2.91 8.14 -2.39 -0.02 2.89 16 27 H 0.08 2.72 7.01 -2.39 -0.02 2.70 16 28 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.05 1.27 8.11 -2.39 -0.02 1.25 16 30 H 0.05 1.23 8.13 -2.39 -0.02 1.22 16 31 H 0.03 1.36 7.75 -2.39 -0.02 1.35 16 32 H 0.10 4.92 1.30 -78.09 -0.10 4.82 16 33 H 0.04 1.58 7.61 -2.39 -0.02 1.57 16 34 H 0.08 2.15 6.07 -2.39 -0.01 2.13 16 35 H 0.07 2.62 3.50 -2.59 -0.01 2.61 16 36 H 0.06 1.55 7.71 -2.39 -0.02 1.53 16 Total: -1.00 -68.01 265.62 5.67 -62.34 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: 0.98 Total: 21.61 kcal Atomic # 6 Polarization: -22.55 SS G_CDS: 3.99 Total: -18.55 kcal Atomic # 7 Polarization: -72.32 SS G_CDS: -1.28 Total: -73.60 kcal Atomic # 8 Polarization: -37.58 SS G_CDS: -0.05 Total: -37.63 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -68.01 5.67 -62.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699768726.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.498 kcal (2) G-P(sol) polarization free energy of solvation -68.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds