Wall clock time and date at job start Mon Mar 30 2020 03:13:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46498 * 1
3 3 C 1.37096 * 119.99621 * 2 1
4 4 H 1.08005 * 119.99413 * 213.11429 * 3 2 1
5 5 C 1.38945 * 120.00767 * 33.11563 * 3 2 1
6 6 N 1.31414 * 119.99375 * 5.77707 * 5 3 2
7 7 Si 1.86794 * 120.00398 * 185.77705 * 5 3 2
8 8 H 1.48496 * 109.47219 * 0.02562 * 7 5 3
9 9 H 1.48508 * 109.46975 * 119.99928 * 7 5 3
10 10 H 1.48498 * 109.47239 * 239.99621 * 7 5 3
11 11 C 1.34781 * 120.00110 * 179.97438 * 2 1 3
12 12 O 1.21291 * 119.99604 * 180.02562 * 11 2 1
13 13 C 1.50697 * 119.99939 * 0.02562 * 11 2 1
14 14 H 1.08996 * 115.56205 * 282.58153 * 13 11 2
15 15 C 1.53075 * 117.51246 * 136.87983 * 13 11 2
16 16 C 1.52996 * 59.98346 * 252.52342 * 15 13 11
17 17 H 1.09003 * 117.49572 * 252.49498 * 16 15 13
18 18 C 1.52999 * 117.49948 * 107.50563 * 16 15 13
19 19 C 1.53007 * 109.47277 * 86.07661 * 18 16 15
20 20 C 1.53004 * 109.46979 * 326.07623 * 18 16 15
21 21 C 1.52997 * 109.47196 * 206.07663 * 18 16 15
22 22 H 1.09000 * 109.47764 * 274.89332 * 1 2 3
23 23 H 1.08998 * 109.46838 * 34.89991 * 1 2 3
24 24 H 1.09009 * 109.46570 * 154.88990 * 1 2 3
25 25 H 0.97009 * 119.99641 * 180.02562 * 6 5 3
26 26 H 1.08997 * 117.49407 * 145.03428 * 15 13 11
27 27 H 1.09003 * 117.53317 * 359.97438 * 15 13 11
28 28 H 1.08999 * 109.47026 * 60.00297 * 19 18 16
29 29 H 1.09000 * 109.46696 * 299.99950 * 19 18 16
30 30 H 1.09002 * 109.46854 * 180.02562 * 19 18 16
31 31 H 1.09001 * 109.47114 * 208.59046 * 20 18 16
32 32 H 1.08998 * 109.47353 * 328.59727 * 20 18 16
33 33 H 1.09002 * 109.46542 * 88.59585 * 20 18 16
34 34 H 1.08997 * 109.47116 * 339.10947 * 21 18 16
35 35 H 1.09008 * 109.46971 * 99.10806 * 21 18 16
36 36 H 1.08999 * 109.47493 * 219.10735 * 21 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1504 1.1873 0.0000
4 1 3.0989 1.2633 -0.5110
5 6 1.6250 2.2930 0.6573
6 7 0.5298 2.1723 1.3735
7 14 2.4754 3.9507 0.5232
8 1 3.6797 3.8211 -0.3358
9 1 1.5431 4.9380 -0.0780
10 1 2.8789 4.4110 1.8761
11 6 2.1389 -1.1672 0.0005
12 8 3.3518 -1.1671 0.0010
13 6 1.3854 -2.4723 0.0005
14 1 0.9644 -2.7723 0.9601
15 6 1.8904 -3.5804 -0.9270
16 6 0.5976 -2.8332 -1.2604
17 1 -0.3419 -3.3703 -1.1304
18 6 0.6351 -1.8415 -2.4249
19 6 0.3689 -2.5840 -3.7360
20 6 2.0122 -1.1775 -2.4852
21 6 -0.4385 -0.7712 -2.2180
22 1 -0.3634 0.0877 1.0239
23 1 -0.3633 0.8428 -0.5880
24 1 -0.3633 -0.9307 -0.4362
25 1 0.1627 2.9443 1.8322
26 1 1.8015 -4.6089 -0.5772
27 1 2.7674 -3.3656 -1.5377
28 1 -0.6122 -3.0569 -3.6930
29 1 1.1338 -3.3465 -3.8833
30 1 0.3961 -1.8775 -4.5656
31 1 1.9166 -0.1811 -2.9166
32 1 2.4226 -1.0998 -1.4785
33 1 2.6786 -1.7788 -3.1038
34 1 -1.1975 -1.1459 -1.5313
35 1 0.0186 0.1258 -1.8000
36 1 -0.9013 -0.5309 -3.1751
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000699768726.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:13:04
Heat of formation + Delta-G solvation = 49.158852 kcal
Electronic energy + Delta-G solvation = -17212.265940 eV
Core-core repulsion = 14700.139899 eV
Total energy + Delta-G solvation = -2512.126040 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 225.147 amu
Computer time = 0.40 seconds
Orbital eigenvalues (eV)
-42.31500 -38.37338 -36.94427 -34.75268 -33.57966 -30.02347 -28.28339 -27.39342
-26.00953 -24.44597 -23.62633 -20.50205 -19.61029 -18.92831 -17.65635 -17.19629
-16.17155 -16.02888 -15.65093 -15.42225 -15.15628 -14.36922 -14.10350 -13.67550
-13.61213 -13.20787 -13.03984 -12.89121 -12.69292 -12.46723 -12.16204 -12.02684
-11.96064 -11.48640 -11.34804 -11.03418 -10.96920 -10.84711 -10.55807 -10.19852
-9.46162 -8.25686 -6.02754 1.34386 1.38507 1.51701 2.03778 2.27397
2.77744 3.11098 3.14451 3.70896 3.91273 3.98935 4.10338 4.24839
4.30389 4.57020 4.60345 4.76884 4.80980 4.85123 4.92838 4.97563
5.03512 5.08791 5.15128 5.24802 5.28724 5.38574 5.45414 5.49007
5.51477 5.65359 5.73338 6.17830 6.55972 7.20272 7.50475 8.08252
8.72878
Molecular weight = 225.15amu
Principal moments of inertia in cm(-1)
A = 0.035721 B = 0.010130 C = 0.009540
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 783.670266 B = 2763.323074 C = 2934.293787
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.095 3.905
2 N -0.456 5.456
3 C -0.335 4.335
4 H 0.063 0.937
5 C -0.001 4.001
6 N -0.897 5.897
7 Si 0.982 3.018
8 H -0.275 1.275
9 H -0.266 1.266
10 H -0.277 1.277
11 C 0.501 3.499
12 O -0.643 6.643
13 C -0.200 4.200
14 H 0.133 0.867
15 C -0.143 4.143
16 C -0.110 4.110
17 H 0.145 0.855
18 C -0.038 4.038
19 C -0.126 4.126
20 C -0.204 4.204
21 C -0.173 4.173
22 H 0.027 0.973
23 H 0.051 0.949
24 H 0.108 0.892
25 H 0.270 0.730
26 H 0.129 0.871
27 H 0.078 0.922
28 H 0.076 0.924
29 H 0.055 0.945
30 H 0.052 0.948
31 H 0.031 0.969
32 H 0.105 0.895
33 H 0.041 0.959
34 H 0.080 0.920
35 H 0.067 0.933
36 H 0.057 0.943
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.335 -8.181 -6.574 12.259
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.046 4.046
2 N -0.174 5.174
3 C -0.463 4.463
4 H 0.081 0.919
5 C -0.203 4.203
6 N -0.536 5.536
7 Si 0.806 3.194
8 H -0.199 1.199
9 H -0.191 1.191
10 H -0.203 1.203
11 C 0.296 3.704
12 O -0.535 6.535
13 C -0.221 4.221
14 H 0.150 0.850
15 C -0.180 4.180
16 C -0.128 4.128
17 H 0.162 0.838
18 C -0.038 4.038
19 C -0.183 4.183
20 C -0.261 4.261
21 C -0.229 4.229
22 H 0.045 0.955
23 H 0.069 0.931
24 H 0.126 0.874
25 H 0.080 0.920
26 H 0.147 0.853
27 H 0.096 0.904
28 H 0.095 0.905
29 H 0.074 0.926
30 H 0.071 0.929
31 H 0.050 0.950
32 H 0.122 0.878
33 H 0.060 0.940
34 H 0.098 0.902
35 H 0.085 0.915
36 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges -5.937 -8.010 -6.462 11.882
hybrid contribution 0.718 1.291 0.275 1.503
sum -5.219 -6.719 -6.187 10.520
Atomic orbital electron populations
1.22882 0.80109 1.01422 1.00228 1.43769 1.06487 1.03927 1.63189
1.19470 1.05718 0.88236 1.32920 0.91866 1.26122 0.97086 1.02917
0.94169 1.70036 1.21383 1.31783 1.30348 0.85044 0.78390 0.77898
0.78059 1.19933 1.19078 1.20307 1.19285 0.87280 0.85739 0.78135
1.90539 1.16256 1.88060 1.58674 1.22361 1.06529 0.94923 0.98268
0.84971 1.23073 0.97652 0.96622 1.00633 1.22738 0.97119 1.00168
0.92822 0.83778 1.20095 0.94421 0.94267 0.95047 1.21815 1.02375
0.99593 0.94530 1.23313 0.98063 0.98911 1.05786 1.23209 0.98351
0.99515 1.01840 0.95477 0.93079 0.87439 0.91984 0.85265 0.90354
0.90527 0.92630 0.92918 0.94959 0.87842 0.93956 0.90170 0.91478
0.92388
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.10 4.20 5.70 127.77 0.73 4.93 16
2 N -0.46 -23.52 1.91 -793.48 -1.52 -25.04 16
3 C -0.33 -19.29 9.04 84.04 0.76 -18.53 16
4 H 0.06 3.91 7.60 -2.91 -0.02 3.89 16
5 C 0.00 -0.07 5.25 84.92 0.45 0.38 16
6 N -0.90 -48.79 10.98 21.66 0.24 -48.56 16
7 Si 0.98 43.81 29.56 68.60 2.03 45.84 16
8 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16
9 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16
10 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16
11 C 0.50 24.97 3.92 87.66 0.34 25.31 16
12 O -0.64 -37.58 15.79 -3.06 -0.05 -37.63 16
13 C -0.20 -7.32 5.01 -11.52 -0.06 -7.38 16
14 H 0.13 4.38 8.14 -2.39 -0.02 4.36 16
15 C -0.14 -4.28 9.52 30.62 0.29 -3.99 16
16 C -0.11 -3.11 4.00 -10.80 -0.04 -3.15 16
17 H 0.14 2.99 8.14 -2.39 -0.02 2.97 16
18 C -0.04 -1.17 0.71 -52.18 -0.04 -1.21 16
19 C -0.13 -2.97 8.08 71.98 0.58 -2.39 16
20 C -0.20 -8.19 6.76 71.98 0.49 -7.71 16
21 C -0.17 -5.32 6.89 71.98 0.50 -4.83 16
22 H 0.03 1.30 7.19 -2.39 -0.02 1.28 16
23 H 0.05 2.35 6.24 -2.39 -0.01 2.34 16
24 H 0.11 3.84 2.10 -3.36 -0.01 3.84 16
25 H 0.27 13.80 8.31 -92.70 -0.77 13.03 16
26 H 0.13 2.91 8.14 -2.39 -0.02 2.89 16
27 H 0.08 2.72 7.01 -2.39 -0.02 2.70 16
28 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16
29 H 0.05 1.27 8.11 -2.39 -0.02 1.25 16
30 H 0.05 1.23 8.13 -2.39 -0.02 1.22 16
31 H 0.03 1.36 7.75 -2.39 -0.02 1.35 16
32 H 0.10 4.92 1.30 -78.09 -0.10 4.82 16
33 H 0.04 1.58 7.61 -2.39 -0.02 1.57 16
34 H 0.08 2.15 6.07 -2.39 -0.01 2.13 16
35 H 0.07 2.62 3.50 -2.59 -0.01 2.61 16
36 H 0.06 1.55 7.71 -2.39 -0.02 1.53 16
Total: -1.00 -68.01 265.62 5.67 -62.34
By element:
Atomic # 1 Polarization: 20.63 SS G_CDS: 0.98 Total: 21.61 kcal
Atomic # 6 Polarization: -22.55 SS G_CDS: 3.99 Total: -18.55 kcal
Atomic # 7 Polarization: -72.32 SS G_CDS: -1.28 Total: -73.60 kcal
Atomic # 8 Polarization: -37.58 SS G_CDS: -0.05 Total: -37.63 kcal
Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal
Total: -68.01 5.67 -62.34 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000699768726.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 111.498 kcal
(2) G-P(sol) polarization free energy of solvation -68.010 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.489 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.670 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.340 kcal
(6) G-S(sol) free energy of system = (1) + (5) 49.159 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds