Wall clock time and date at job start Mon Mar 30 2020 03:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37098 * 120.00025 * 2 1 4 4 H 1.08003 * 119.99739 * 199.20781 * 3 2 1 5 5 C 1.38941 * 119.99969 * 19.20367 * 3 2 1 6 6 N 1.31419 * 120.00334 * 16.51560 * 5 3 2 7 7 Si 1.86808 * 119.99943 * 196.51396 * 5 3 2 8 8 H 1.48493 * 109.47166 * 94.98448 * 7 5 3 9 9 H 1.48500 * 109.46940 * 214.98502 * 7 5 3 10 10 H 1.48499 * 109.47036 * 334.98300 * 7 5 3 11 11 C 1.34777 * 119.99959 * 179.97438 * 2 1 3 12 12 O 1.21289 * 120.00411 * 180.02562 * 11 2 1 13 13 C 1.50700 * 119.99763 * 0.02562 * 11 2 1 14 14 H 1.08998 * 115.56182 * 49.47787 * 13 11 2 15 15 C 1.53007 * 117.49850 * 195.15755 * 13 11 2 16 16 C 1.53003 * 60.03138 * 107.50552 * 15 13 11 17 17 H 1.08997 * 117.49892 * 107.47976 * 16 15 13 18 18 C 1.52995 * 117.49727 * 252.47880 * 16 15 13 19 19 C 1.53000 * 109.47528 * 21.63053 * 18 16 15 20 20 C 1.53002 * 109.47244 * 141.63380 * 18 16 15 21 21 C 1.53004 * 109.47042 * 261.62999 * 18 16 15 22 22 H 1.08991 * 109.47856 * 275.27102 * 1 2 3 23 23 H 1.09001 * 109.46880 * 35.27831 * 1 2 3 24 24 H 1.09003 * 109.46884 * 155.26555 * 1 2 3 25 25 H 0.96997 * 119.99711 * 179.97438 * 6 5 3 26 26 H 1.09002 * 117.49800 * 0.02562 * 15 13 11 27 27 H 1.08992 * 117.49877 * 215.00731 * 15 13 11 28 28 H 1.08994 * 109.46822 * 77.36892 * 19 18 16 29 29 H 1.09001 * 109.47392 * 197.37206 * 19 18 16 30 30 H 1.09001 * 109.46910 * 317.37218 * 19 18 16 31 31 H 1.09004 * 109.47201 * 53.43301 * 20 18 16 32 32 H 1.08998 * 109.47184 * 173.43328 * 20 18 16 33 33 H 1.08997 * 109.47065 * 293.43618 * 20 18 16 34 34 H 1.09006 * 109.46984 * 59.99998 * 21 18 16 35 35 H 1.08997 * 109.47121 * 180.02562 * 21 18 16 36 36 H 1.09005 * 109.47091 * 300.00356 * 21 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1854 1.2133 -0.3077 5 6 1.5138 2.3571 0.3958 6 7 0.3861 2.2964 1.0680 7 14 2.2607 4.0162 -0.0275 8 1 1.6514 4.5279 -1.2813 9 1 1.9981 4.9735 1.0770 10 1 3.7261 3.8661 -0.2146 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1673 0.0010 13 6 1.3853 -2.4723 0.0005 14 1 0.5972 -2.5603 -0.7472 15 6 2.1664 -3.7391 0.3560 16 6 1.1588 -3.1582 1.3502 17 1 0.2217 -3.6970 1.4898 18 6 1.7147 -2.4669 2.5968 19 6 3.1585 -2.0319 2.3378 20 6 0.8624 -1.2385 2.9216 21 6 1.6790 -3.4392 3.7777 22 1 -0.3634 0.0944 1.0232 23 1 -0.3633 0.8390 -0.5935 24 1 -0.3633 -0.9334 -0.4300 25 1 -0.0581 3.1131 1.3445 26 1 3.2252 -3.6284 0.5902 27 1 1.8922 -4.6602 -0.1581 28 1 3.1620 -1.1305 1.7251 29 1 3.6524 -1.8275 3.2877 30 1 3.6897 -2.8280 1.8160 31 1 -0.1853 -1.5313 2.9913 32 1 1.1849 -0.8136 3.8722 33 1 0.9803 -0.4956 2.1328 34 1 2.2862 -4.3144 3.5462 35 1 2.0746 -2.9466 4.6659 36 1 0.6504 -3.7491 3.9622 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699768727.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:07 Heat of formation + Delta-G solvation = 10.016138 kcal Electronic energy + Delta-G solvation = -17015.290435 eV Core-core repulsion = 14501.467039 eV Total energy + Delta-G solvation = -2513.823396 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.87966 -36.80877 -34.68517 -33.28983 -31.53647 -26.92916 -26.55641 -26.10318 -24.94673 -22.73685 -22.22896 -18.74886 -17.63924 -16.80875 -16.36872 -14.92064 -14.81369 -14.36311 -13.92630 -13.55091 -13.24571 -12.66287 -12.33697 -12.13166 -11.84333 -11.61214 -11.36061 -11.25552 -10.94927 -10.87559 -10.42790 -10.32840 -10.28259 -10.18434 -10.10393 -9.85819 -9.51822 -9.20817 -8.80081 -8.29624 -7.59615 -6.30085 -3.82176 3.16248 3.26886 3.32245 3.76786 4.12865 4.43094 4.86251 5.13216 5.20281 5.39366 5.48651 5.59117 5.77210 5.82998 5.96064 6.04273 6.14875 6.20191 6.34583 6.41402 6.44669 6.47287 6.50870 6.64413 6.81373 6.90727 6.93335 7.01068 7.16421 7.41834 7.54817 7.59906 8.15185 8.51956 9.21749 9.46604 10.04139 10.72744 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.035687 B = 0.009695 C = 0.009208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.402029 B = 2887.437060 C = 3039.943875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.440 5.440 3 C -0.308 4.308 4 H 0.100 0.900 5 C 0.033 3.967 6 N -0.876 5.876 7 Si 0.921 3.079 8 H -0.279 1.279 9 H -0.285 1.285 10 H -0.269 1.269 11 C 0.479 3.521 12 O -0.580 6.580 13 C -0.167 4.167 14 H 0.107 0.893 15 C -0.163 4.163 16 C -0.120 4.120 17 H 0.098 0.902 18 C -0.037 4.037 19 C -0.181 4.181 20 C -0.154 4.154 21 C -0.134 4.134 22 H 0.068 0.932 23 H 0.061 0.939 24 H 0.028 0.972 25 H 0.267 0.733 26 H 0.112 0.888 27 H 0.086 0.914 28 H 0.116 0.884 29 H 0.031 0.969 30 H 0.056 0.944 31 H 0.041 0.959 32 H 0.043 0.957 33 H 0.097 0.903 34 H 0.049 0.951 35 H 0.049 0.951 36 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.532 -7.443 1.663 8.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.157 5.157 3 C -0.436 4.436 4 H 0.118 0.882 5 C -0.171 4.171 6 N -0.515 5.515 7 Si 0.749 3.251 8 H -0.206 1.206 9 H -0.211 1.211 10 H -0.194 1.194 11 C 0.269 3.731 12 O -0.467 6.467 13 C -0.189 4.189 14 H 0.125 0.875 15 C -0.200 4.200 16 C -0.139 4.139 17 H 0.116 0.884 18 C -0.037 4.037 19 C -0.238 4.238 20 C -0.211 4.211 21 C -0.191 4.191 22 H 0.086 0.914 23 H 0.080 0.920 24 H 0.046 0.954 25 H 0.077 0.923 26 H 0.130 0.870 27 H 0.105 0.895 28 H 0.134 0.866 29 H 0.050 0.950 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.116 0.884 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.101 -7.257 1.744 7.754 hybrid contribution -0.092 0.806 -0.105 0.818 sum -2.193 -6.451 1.639 7.008 Atomic orbital electron populations 1.21606 0.81237 0.98200 1.02567 1.43562 1.05462 1.04611 1.62076 1.19670 0.97996 0.83220 1.42733 0.88227 1.25255 0.96551 0.99770 0.95517 1.70027 1.18049 1.28811 1.34631 0.85980 0.79622 0.81570 0.77974 1.20553 1.21053 1.19378 1.18870 0.87286 0.83743 0.83245 1.90452 1.13951 1.86980 1.55325 1.22212 1.02941 0.93851 0.99872 0.87530 1.23158 0.99298 0.95198 1.02347 1.22353 0.99641 1.01910 0.89958 0.88390 1.20038 0.96660 0.94713 0.92282 1.23001 0.93629 1.05874 1.01248 1.22153 0.97696 0.98112 1.03124 1.21846 1.00687 0.98923 0.97657 0.91373 0.92048 0.95366 0.92318 0.87038 0.89515 0.86641 0.95018 0.92567 0.94024 0.93827 0.88409 0.93224 0.93147 0.93424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.39 7.97 59.85 0.48 2.86 16 2 N -0.44 -10.93 2.00 -122.20 -0.24 -11.18 16 3 C -0.31 -8.39 9.33 -14.94 -0.14 -8.52 16 4 H 0.10 2.86 7.38 -52.48 -0.39 2.48 16 5 C 0.03 0.84 5.04 -17.47 -0.09 0.76 16 6 N -0.88 -22.70 10.69 55.50 0.59 -22.11 16 7 Si 0.92 20.58 29.58 -169.99 -5.03 15.55 16 8 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 9 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 11 C 0.48 11.40 4.20 -10.98 -0.05 11.36 16 12 O -0.58 -15.44 12.90 5.55 0.07 -15.36 16 13 C -0.17 -3.20 4.82 -91.73 -0.44 -3.64 16 14 H 0.11 1.85 7.10 -51.93 -0.37 1.48 16 15 C -0.16 -2.74 9.35 -26.73 -0.25 -2.99 16 16 C -0.12 -2.03 5.00 -90.58 -0.45 -2.48 16 17 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 18 C -0.04 -0.66 0.75 -154.51 -0.12 -0.78 16 19 C -0.18 -3.72 6.80 37.16 0.25 -3.47 16 20 C -0.15 -3.01 8.01 37.16 0.30 -2.71 16 21 C -0.13 -2.00 8.40 37.16 0.31 -1.69 16 22 H 0.07 1.56 5.81 -51.93 -0.30 1.26 16 23 H 0.06 1.43 7.19 -51.93 -0.37 1.05 16 24 H 0.03 0.53 6.09 -51.93 -0.32 0.22 16 25 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 26 H 0.11 2.06 5.22 -51.93 -0.27 1.78 16 27 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.12 2.86 3.82 -53.07 -0.20 2.65 16 29 H 0.03 0.61 8.02 -51.93 -0.42 0.19 16 30 H 0.06 1.12 5.18 -51.93 -0.27 0.85 16 31 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.10 2.24 3.51 -51.93 -0.18 2.06 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 270.77 15.07 4.08 4.08 Total: -1.00 -28.14 270.77 -5.91 -34.04 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -5.18 Total: 6.29 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -0.19 Total: -11.31 kcal Atomic # 7 Polarization: -33.63 SS G_CDS: 0.35 Total: -33.28 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: 0.07 Total: -15.36 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.03 Total: 15.55 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -28.14 -5.91 -34.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699768727.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.059 kcal (2) G-P(sol) polarization free energy of solvation -28.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds