Wall clock time and date at job start Mon Mar 30 2020 03:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37098 * 120.00025 * 2 1 4 4 H 1.08003 * 119.99739 * 199.20781 * 3 2 1 5 5 C 1.38941 * 119.99969 * 19.20367 * 3 2 1 6 6 N 1.31419 * 120.00334 * 16.51560 * 5 3 2 7 7 Si 1.86808 * 119.99943 * 196.51396 * 5 3 2 8 8 H 1.48493 * 109.47166 * 94.98448 * 7 5 3 9 9 H 1.48500 * 109.46940 * 214.98502 * 7 5 3 10 10 H 1.48499 * 109.47036 * 334.98300 * 7 5 3 11 11 C 1.34777 * 119.99959 * 179.97438 * 2 1 3 12 12 O 1.21289 * 120.00411 * 180.02562 * 11 2 1 13 13 C 1.50700 * 119.99763 * 0.02562 * 11 2 1 14 14 H 1.08998 * 115.56182 * 49.47787 * 13 11 2 15 15 C 1.53007 * 117.49850 * 195.15755 * 13 11 2 16 16 C 1.53003 * 60.03138 * 107.50552 * 15 13 11 17 17 H 1.08997 * 117.49892 * 107.47976 * 16 15 13 18 18 C 1.52995 * 117.49727 * 252.47880 * 16 15 13 19 19 C 1.53000 * 109.47528 * 21.63053 * 18 16 15 20 20 C 1.53002 * 109.47244 * 141.63380 * 18 16 15 21 21 C 1.53004 * 109.47042 * 261.62999 * 18 16 15 22 22 H 1.08991 * 109.47856 * 275.27102 * 1 2 3 23 23 H 1.09001 * 109.46880 * 35.27831 * 1 2 3 24 24 H 1.09003 * 109.46884 * 155.26555 * 1 2 3 25 25 H 0.96997 * 119.99711 * 179.97438 * 6 5 3 26 26 H 1.09002 * 117.49800 * 0.02562 * 15 13 11 27 27 H 1.08992 * 117.49877 * 215.00731 * 15 13 11 28 28 H 1.08994 * 109.46822 * 77.36892 * 19 18 16 29 29 H 1.09001 * 109.47392 * 197.37206 * 19 18 16 30 30 H 1.09001 * 109.46910 * 317.37218 * 19 18 16 31 31 H 1.09004 * 109.47201 * 53.43301 * 20 18 16 32 32 H 1.08998 * 109.47184 * 173.43328 * 20 18 16 33 33 H 1.08997 * 109.47065 * 293.43618 * 20 18 16 34 34 H 1.09006 * 109.46984 * 59.99998 * 21 18 16 35 35 H 1.08997 * 109.47121 * 180.02562 * 21 18 16 36 36 H 1.09005 * 109.47091 * 300.00356 * 21 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1854 1.2133 -0.3077 5 6 1.5138 2.3571 0.3958 6 7 0.3861 2.2964 1.0680 7 14 2.2607 4.0162 -0.0275 8 1 1.6514 4.5279 -1.2813 9 1 1.9981 4.9735 1.0770 10 1 3.7261 3.8661 -0.2146 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1673 0.0010 13 6 1.3853 -2.4723 0.0005 14 1 0.5972 -2.5603 -0.7472 15 6 2.1664 -3.7391 0.3560 16 6 1.1588 -3.1582 1.3502 17 1 0.2217 -3.6970 1.4898 18 6 1.7147 -2.4669 2.5968 19 6 3.1585 -2.0319 2.3378 20 6 0.8624 -1.2385 2.9216 21 6 1.6790 -3.4392 3.7777 22 1 -0.3634 0.0944 1.0232 23 1 -0.3633 0.8390 -0.5935 24 1 -0.3633 -0.9334 -0.4300 25 1 -0.0581 3.1131 1.3445 26 1 3.2252 -3.6284 0.5902 27 1 1.8922 -4.6602 -0.1581 28 1 3.1620 -1.1305 1.7251 29 1 3.6524 -1.8275 3.2877 30 1 3.6897 -2.8280 1.8160 31 1 -0.1853 -1.5313 2.9913 32 1 1.1849 -0.8136 3.8722 33 1 0.9803 -0.4956 2.1328 34 1 2.2862 -4.3144 3.5462 35 1 2.0746 -2.9466 4.6659 36 1 0.6504 -3.7491 3.9622 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699768727.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:07 Heat of formation + Delta-G solvation = -5.567916 kcal Electronic energy + Delta-G solvation = -17015.966210 eV Core-core repulsion = 14501.467039 eV Total energy + Delta-G solvation = -2514.499171 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.51089 -38.47251 -36.59248 -34.73746 -33.50798 -28.63785 -28.02431 -27.75553 -26.75832 -24.37235 -23.64155 -20.38633 -19.24780 -18.72722 -18.03814 -16.76683 -16.42590 -16.09398 -15.51696 -15.26898 -14.79921 -14.19096 -13.97027 -13.75355 -13.36731 -13.18182 -13.08879 -12.95514 -12.62963 -12.37903 -12.29561 -12.15025 -11.81551 -11.75171 -11.66648 -11.32365 -11.05891 -10.87388 -10.49218 -10.14384 -9.53523 -8.27762 -5.87206 1.36269 1.41337 1.52538 2.03963 2.29259 2.89890 3.13890 3.25755 3.77977 3.97836 4.04233 4.17246 4.33748 4.35969 4.50302 4.72254 4.75246 4.85352 4.88347 4.91054 5.01425 5.04593 5.11859 5.19905 5.25736 5.37148 5.38119 5.48019 5.51075 5.54171 5.75432 5.87423 6.15026 6.56416 7.25142 7.57331 8.15732 8.72957 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.035687 B = 0.009695 C = 0.009208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.402029 B = 2887.437060 C = 3039.943875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.119 3.881 2 N -0.453 5.453 3 C -0.340 4.340 4 H 0.068 0.932 5 C 0.002 3.998 6 N -0.887 5.887 7 Si 0.979 3.021 8 H -0.268 1.268 9 H -0.276 1.276 10 H -0.279 1.279 11 C 0.477 3.523 12 O -0.620 6.620 13 C -0.190 4.190 14 H 0.131 0.869 15 C -0.149 4.149 16 C -0.105 4.105 17 H 0.136 0.864 18 C -0.038 4.038 19 C -0.177 4.177 20 C -0.152 4.152 21 C -0.127 4.127 22 H 0.059 0.941 23 H 0.043 0.957 24 H 0.063 0.937 25 H 0.271 0.729 26 H 0.090 0.910 27 H 0.126 0.874 28 H 0.072 0.928 29 H 0.031 0.969 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.035 0.965 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.048 0.952 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.053 -9.131 2.013 10.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.170 5.170 3 C -0.468 4.468 4 H 0.086 0.914 5 C -0.200 4.200 6 N -0.525 5.525 7 Si 0.804 3.196 8 H -0.194 1.194 9 H -0.201 1.201 10 H -0.204 1.204 11 C 0.268 3.732 12 O -0.509 6.509 13 C -0.211 4.211 14 H 0.148 0.852 15 C -0.186 4.186 16 C -0.123 4.123 17 H 0.153 0.847 18 C -0.038 4.038 19 C -0.233 4.233 20 C -0.209 4.209 21 C -0.184 4.184 22 H 0.077 0.923 23 H 0.062 0.938 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.108 0.892 27 H 0.144 0.856 28 H 0.090 0.910 29 H 0.050 0.950 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.054 0.946 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.647 -8.951 2.096 9.890 hybrid contribution 0.443 1.321 -0.185 1.405 sum -3.203 -7.631 1.911 8.494 Atomic orbital electron populations 1.21506 0.79766 0.99187 1.01896 1.43699 1.06387 1.04386 1.62550 1.19516 0.97391 0.85256 1.44680 0.91361 1.25880 0.97024 1.02127 0.94976 1.70091 1.18446 1.29651 1.34340 0.85130 0.78290 0.77950 0.78247 1.19372 1.20140 1.20367 1.19687 0.87149 0.85083 0.81328 1.90425 1.16026 1.87833 1.56577 1.22190 1.04268 0.92004 1.02620 0.85178 1.23229 0.98075 0.95386 1.01901 1.22513 1.01051 1.00686 0.88095 0.84667 1.20051 0.94225 0.95016 0.94542 1.22852 0.96170 1.04001 1.00304 1.22090 0.99287 0.98105 1.01424 1.21767 1.02473 0.98284 0.95867 0.92303 0.93848 0.91907 0.91932 0.89224 0.85588 0.90961 0.95034 0.92373 0.91991 0.94583 0.91850 0.91952 0.93281 0.91135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.28 7.97 127.77 1.02 6.30 16 2 N -0.45 -23.05 2.00 -658.90 -1.32 -24.37 16 3 C -0.34 -19.30 9.33 84.04 0.78 -18.51 16 4 H 0.07 4.20 7.38 -2.91 -0.02 4.18 16 5 C 0.00 0.12 5.04 84.92 0.43 0.55 16 6 N -0.89 -46.42 10.69 21.66 0.23 -46.19 16 7 Si 0.98 42.96 29.58 68.60 2.03 44.99 16 8 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 9 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 10 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 11 C 0.48 23.01 4.20 87.66 0.37 23.38 16 12 O -0.62 -34.35 12.90 -3.06 -0.04 -34.39 16 13 C -0.19 -6.84 4.82 -11.51 -0.06 -6.90 16 14 H 0.13 4.05 7.10 -2.39 -0.02 4.04 16 15 C -0.15 -4.55 9.35 30.60 0.29 -4.26 16 16 C -0.10 -3.17 5.00 -10.77 -0.05 -3.23 16 17 H 0.14 3.19 8.14 -2.39 -0.02 3.17 16 18 C -0.04 -1.30 0.75 -52.18 -0.04 -1.34 16 19 C -0.18 -7.31 6.80 71.98 0.49 -6.82 16 20 C -0.15 -5.79 8.01 71.98 0.58 -5.21 16 21 C -0.13 -3.34 8.40 71.98 0.60 -2.73 16 22 H 0.06 2.69 5.81 -2.39 -0.01 2.68 16 23 H 0.04 2.02 7.19 -2.39 -0.02 2.01 16 24 H 0.06 2.27 6.09 -2.39 -0.01 2.26 16 25 H 0.27 13.38 8.31 -92.71 -0.77 12.61 16 26 H 0.09 3.18 5.22 -2.39 -0.01 3.17 16 27 H 0.13 2.88 8.14 -2.39 -0.02 2.86 16 28 H 0.07 3.72 3.82 -20.39 -0.08 3.64 16 29 H 0.03 1.23 8.02 -2.39 -0.02 1.21 16 30 H 0.06 2.33 5.18 -2.39 -0.01 2.32 16 31 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 32 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.06 2.92 3.51 -2.39 -0.01 2.91 16 34 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 35 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 Total: -1.00 -63.69 270.77 6.31 -57.38 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: 1.00 Total: 21.36 kcal Atomic # 6 Polarization: -23.19 SS G_CDS: 4.41 Total: -18.79 kcal Atomic # 7 Polarization: -69.47 SS G_CDS: -1.09 Total: -70.56 kcal Atomic # 8 Polarization: -34.35 SS G_CDS: -0.04 Total: -34.39 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -63.69 6.31 -57.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699768727.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.816 kcal (2) G-P(sol) polarization free energy of solvation -63.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds