Wall clock time and date at job start Mon Mar 30 2020 03:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.37097 * 120.00257 * 2 1 4 4 H 1.07997 * 120.00507 * 201.70150 * 3 2 1 5 5 C 1.38956 * 119.99842 * 21.70724 * 3 2 1 6 6 N 1.31408 * 119.99563 * 14.83770 * 5 3 2 7 7 Si 1.86795 * 119.99919 * 194.83970 * 5 3 2 8 8 H 1.48499 * 109.47256 * 59.99751 * 7 5 3 9 9 H 1.48506 * 109.46795 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47434 * 299.99449 * 7 5 3 11 11 C 1.34783 * 120.00280 * 180.02562 * 2 1 3 12 12 O 1.21291 * 120.00036 * 179.97438 * 11 2 1 13 13 C 1.50703 * 119.99460 * 0.02562 * 11 2 1 14 14 H 1.09000 * 115.56431 * 325.69650 * 13 11 2 15 15 C 1.52996 * 117.49780 * 111.39311 * 13 11 2 16 16 C 1.52999 * 60.03295 * 107.49777 * 15 13 11 17 17 H 1.08999 * 117.49672 * 252.49614 * 16 15 13 18 18 C 1.52995 * 117.50193 * 107.50145 * 16 15 13 19 19 C 1.53000 * 109.47473 * 111.39063 * 18 16 15 20 20 C 1.53001 * 109.47386 * 231.39333 * 18 16 15 21 21 C 1.53009 * 109.47032 * 351.39011 * 18 16 15 22 22 H 1.08996 * 109.47440 * 270.59700 * 1 2 3 23 23 H 1.09001 * 109.46859 * 30.60120 * 1 2 3 24 24 H 1.09002 * 109.46946 * 150.59491 * 1 2 3 25 25 H 0.97008 * 120.00076 * 180.02562 * 6 5 3 26 26 H 1.09001 * 117.50329 * 359.97438 * 15 13 11 27 27 H 1.09004 * 117.49496 * 214.99916 * 15 13 11 28 28 H 1.08999 * 109.46890 * 60.00222 * 19 18 16 29 29 H 1.09005 * 109.47252 * 180.02562 * 19 18 16 30 30 H 1.09003 * 109.46958 * 299.99891 * 19 18 16 31 31 H 1.09001 * 109.47231 * 59.99689 * 20 18 16 32 32 H 1.08995 * 109.47342 * 180.02562 * 20 18 16 33 33 H 1.09001 * 109.46603 * 300.00068 * 20 18 16 34 34 H 1.08997 * 109.46862 * 60.00150 * 21 18 16 35 35 H 1.09003 * 109.46892 * 180.02562 * 21 18 16 36 36 H 1.09001 * 109.47122 * 300.00027 * 21 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1731 1.2205 -0.3458 5 6 1.5296 2.3480 0.4451 6 7 0.4105 2.2733 1.1297 7 14 2.2859 4.0144 0.0701 8 1 2.3763 4.1973 -1.4008 9 1 1.4363 5.0853 0.6504 10 1 3.6458 4.0854 0.6623 11 6 2.1389 -1.1672 -0.0005 12 8 3.3518 -1.1672 -0.0010 13 6 1.3853 -2.4723 -0.0017 14 1 0.4465 -2.4739 0.5521 15 6 1.4613 -3.3307 -1.2658 16 6 2.2075 -3.7635 -0.0022 17 1 3.2934 -3.6690 -0.0018 18 6 1.6488 -4.9575 0.7742 19 6 2.6105 -6.1411 0.6512 20 6 1.4919 -4.5791 2.2484 21 6 0.2851 -5.3465 0.1997 22 1 -0.3634 0.0107 1.0275 23 1 -0.3633 0.8846 -0.5232 24 1 -0.3633 -0.8953 -0.5046 25 1 -0.0232 3.0836 1.4402 26 1 2.0559 -2.9514 -2.0969 27 1 0.5722 -3.8967 -1.5440 28 1 3.5820 -5.8640 1.0605 29 1 2.2122 -6.9920 1.2040 30 1 2.7222 -6.4108 -0.3990 31 1 0.8067 -3.7359 2.3361 32 1 1.0943 -5.4298 2.8016 33 1 2.4634 -4.3019 2.6576 34 1 0.3969 -5.6162 -0.8505 35 1 -0.1131 -6.1970 0.7532 36 1 -0.4000 -4.5033 0.2874 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699768728.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:10 Heat of formation + Delta-G solvation = -18.947947 kcal Electronic energy + Delta-G solvation = -16081.802151 eV Core-core repulsion = 13566.722778 eV Total energy + Delta-G solvation = -2515.079373 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.40295 -37.45758 -34.63990 -33.29747 -31.47989 -27.28060 -27.12332 -26.40954 -24.92281 -22.78983 -22.34275 -18.67876 -17.94096 -16.85700 -16.32239 -15.10037 -14.77688 -14.14407 -13.97244 -13.75296 -13.62052 -13.06157 -12.37268 -12.21455 -12.10069 -11.61605 -11.53744 -11.42111 -11.22788 -11.18469 -10.93183 -10.81061 -10.74744 -10.39707 -10.28921 -10.27026 -9.70787 -9.39423 -8.96730 -8.31416 -7.62210 -6.27890 -3.81442 3.20687 3.26616 3.30967 3.69924 4.16523 4.44910 4.69595 4.99669 5.05986 5.16986 5.24178 5.48126 5.52943 5.61333 5.68926 5.82299 5.83535 5.93033 6.00095 6.03352 6.06173 6.15244 6.21452 6.35126 6.39195 6.49528 6.55051 6.56613 6.78206 6.92014 7.25040 7.60886 8.19183 8.55162 9.24789 9.49989 10.07974 10.76649 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.050914 B = 0.006500 C = 0.006310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.815871 B = 4306.451396 C = 4436.492235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.115 3.885 2 N -0.444 5.444 3 C -0.307 4.307 4 H 0.097 0.903 5 C 0.029 3.971 6 N -0.882 5.882 7 Si 0.926 3.074 8 H -0.274 1.274 9 H -0.284 1.284 10 H -0.273 1.273 11 C 0.474 3.526 12 O -0.592 6.592 13 C -0.161 4.161 14 H 0.109 0.891 15 C -0.164 4.164 16 C -0.116 4.116 17 H 0.112 0.888 18 C -0.039 4.039 19 C -0.136 4.136 20 C -0.139 4.139 21 C -0.144 4.144 22 H 0.054 0.946 23 H 0.067 0.933 24 H 0.028 0.972 25 H 0.267 0.733 26 H 0.091 0.909 27 H 0.098 0.902 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.049 0.951 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.051 0.949 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.153 -11.930 -1.328 12.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.162 5.162 3 C -0.435 4.435 4 H 0.115 0.885 5 C -0.173 4.173 6 N -0.522 5.522 7 Si 0.752 3.248 8 H -0.200 1.200 9 H -0.210 1.210 10 H -0.198 1.198 11 C 0.262 3.738 12 O -0.478 6.478 13 C -0.182 4.182 14 H 0.127 0.873 15 C -0.202 4.202 16 C -0.134 4.134 17 H 0.130 0.870 18 C -0.039 4.039 19 C -0.193 4.193 20 C -0.196 4.196 21 C -0.201 4.201 22 H 0.072 0.928 23 H 0.086 0.914 24 H 0.047 0.953 25 H 0.077 0.923 26 H 0.109 0.891 27 H 0.117 0.883 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.720 -11.743 -1.232 12.117 hybrid contribution 0.043 1.039 -0.032 1.040 sum -2.677 -10.704 -1.263 11.106 Atomic orbital electron populations 1.21448 0.81239 0.99007 1.01233 1.43496 1.05478 1.04614 1.62607 1.19616 0.99182 0.83717 1.40944 0.88481 1.25313 0.96651 0.99996 0.95385 1.70015 1.18799 1.29257 1.34084 0.86010 0.78965 0.80984 0.78805 1.19963 1.20967 1.19816 1.19212 0.87349 0.83911 0.83329 1.90487 1.14007 1.87039 1.56233 1.22264 1.01417 0.91635 1.02899 0.87275 1.23101 1.02721 1.02649 0.91728 1.22316 0.98982 0.93016 0.99122 0.87031 1.20068 0.94993 0.93701 0.95136 1.21821 0.99079 0.96926 1.01514 1.21838 1.02213 1.00898 0.94693 1.22009 0.96413 1.01014 1.00686 0.92787 0.91411 0.95296 0.92277 0.89055 0.88341 0.92572 0.92983 0.92694 0.92378 0.93155 0.92480 0.92334 0.93009 0.92434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.65 8.29 59.84 0.50 3.15 16 2 N -0.44 -11.85 3.02 -122.19 -0.37 -12.22 16 3 C -0.31 -8.84 9.29 -14.93 -0.14 -8.98 16 4 H 0.10 2.92 7.41 -52.49 -0.39 2.53 16 5 C 0.03 0.80 5.03 -17.47 -0.09 0.71 16 6 N -0.88 -24.08 10.77 55.50 0.60 -23.48 16 7 Si 0.93 21.19 29.58 -169.99 -5.03 16.16 16 8 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 9 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 11 C 0.47 12.07 7.41 -10.98 -0.08 11.99 16 12 O -0.59 -17.10 15.95 5.55 0.09 -17.02 16 13 C -0.16 -3.11 3.65 -91.73 -0.33 -3.44 16 14 H 0.11 1.97 6.18 -51.93 -0.32 1.65 16 15 C -0.16 -2.66 9.27 -26.73 -0.25 -2.91 16 16 C -0.12 -1.93 4.66 -90.58 -0.42 -2.36 16 17 H 0.11 2.11 7.64 -51.93 -0.40 1.72 16 18 C -0.04 -0.51 0.88 -154.51 -0.14 -0.65 16 19 C -0.14 -1.57 8.46 37.16 0.31 -1.25 16 20 C -0.14 -1.88 8.31 37.16 0.31 -1.57 16 21 C -0.14 -1.65 7.07 37.16 0.26 -1.39 16 22 H 0.05 1.29 7.63 -51.93 -0.40 0.89 16 23 H 0.07 1.64 7.00 -51.93 -0.36 1.27 16 24 H 0.03 0.56 6.60 -51.93 -0.34 0.22 16 25 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 26 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 27 H 0.10 1.32 5.85 -51.93 -0.30 1.02 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.84 7.29 -51.93 -0.38 0.47 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.63 6.98 -51.93 -0.36 0.27 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.69 7.07 -51.93 -0.37 0.32 16 LS Contribution 287.90 15.07 4.34 4.34 Total: -1.00 -31.14 287.90 -6.15 -37.29 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -5.72 Total: 1.63 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -0.07 Total: -6.70 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: 0.23 Total: -35.70 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: 0.09 Total: -17.02 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.16 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -31.14 -6.15 -37.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699768728.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.346 kcal (2) G-P(sol) polarization free energy of solvation -31.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds