Wall clock time and date at job start Mon Mar 30 2020 02:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46498 * 119.99891 * 2 1 4 4 C 1.50704 * 109.46869 * 89.99916 * 3 2 1 5 5 H 1.08000 * 120.00035 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99963 * 179.97438 * 4 3 2 7 7 N 1.31519 * 119.99760 * 179.97438 * 6 4 3 8 8 Si 1.86796 * 120.00097 * 0.02562 * 6 4 3 9 9 H 1.48508 * 109.47199 * 89.99823 * 8 6 4 10 10 H 1.48495 * 109.47251 * 209.99841 * 8 6 4 11 11 H 1.48501 * 109.47073 * 330.00151 * 8 6 4 12 12 C 1.34768 * 120.00122 * 180.02562 * 2 1 3 13 13 O 1.21281 * 120.00510 * 185.13874 * 12 2 1 14 14 C 1.50705 * 120.00128 * 5.13776 * 12 2 1 15 15 C 1.53003 * 115.54944 * 62.78542 * 14 12 2 16 16 C 1.52997 * 117.49922 * 208.45437 * 14 12 2 17 17 C 1.53001 * 117.49891 * 277.12038 * 14 12 2 18 18 C 1.52994 * 117.49602 * 359.97438 * 17 14 12 19 19 C 1.52992 * 117.49774 * 144.99748 * 17 14 12 20 20 H 1.09000 * 109.46677 * 85.85191 * 1 2 3 21 21 H 1.08999 * 109.47012 * 205.85149 * 1 2 3 22 22 H 1.08995 * 109.47140 * 325.85778 * 1 2 3 23 23 H 1.08998 * 109.47207 * 209.99600 * 3 2 1 24 24 H 1.09000 * 109.47794 * 330.00565 * 3 2 1 25 25 H 0.96996 * 119.99330 * 179.97438 * 7 6 4 26 26 H 1.09006 * 109.46983 * 53.88060 * 15 14 12 27 27 H 1.08998 * 109.47074 * 173.87809 * 15 14 12 28 28 H 1.09001 * 109.47021 * 293.88506 * 15 14 12 29 29 H 1.09000 * 117.49754 * 214.97299 * 16 14 12 30 30 H 1.08994 * 117.50327 * 0.02562 * 16 14 12 31 31 H 1.08995 * 109.47208 * 60.00881 * 18 17 14 32 32 H 1.09007 * 109.46721 * 180.02562 * 18 17 14 33 33 H 1.09000 * 109.47732 * 300.00064 * 18 17 14 34 34 H 1.08995 * 109.47822 * 59.99684 * 19 17 14 35 35 H 1.09004 * 109.47232 * 179.97438 * 19 17 14 36 36 H 1.09002 * 109.47485 * 299.99213 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 1.4209 5 1 2.0981 1.0957 2.2417 6 6 3.1269 2.8774 1.6729 7 7 3.3456 3.2573 2.9129 8 14 3.7338 3.9287 0.2531 9 1 2.6823 4.9078 -0.1228 10 1 4.9620 4.6550 0.6647 11 1 4.0396 3.0593 -0.9112 12 6 2.1389 -1.1671 -0.0005 13 8 3.3481 -1.1693 0.0935 14 6 1.3900 -2.4696 -0.1180 15 6 0.6116 -2.6681 -1.4202 16 6 2.0201 -3.7072 0.5241 17 6 0.7891 -3.0568 1.1607 18 6 0.9951 -2.2770 2.4608 19 6 -0.5440 -3.7976 1.0393 20 1 -0.3633 0.0743 -1.0250 21 1 -0.3633 -0.9248 0.4481 22 1 -0.3633 0.8505 0.5767 23 1 3.1500 1.1384 -0.5138 24 1 1.6085 2.0285 -0.5137 25 1 3.8230 4.0828 3.0901 26 1 1.2807 -2.5252 -2.2688 27 1 0.2006 -3.6773 -1.4475 28 1 -0.2008 -1.9433 -1.4720 29 1 1.8796 -4.6629 0.0191 30 1 2.9760 -3.5793 1.0319 31 1 0.5528 -1.2856 2.3637 32 1 0.5173 -2.8094 3.2833 33 1 2.0620 -2.1808 2.6618 34 1 -0.4297 -4.6426 0.3604 35 1 -0.8493 -4.1596 2.0211 36 1 -1.3028 -3.1188 0.6499 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702131506.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:44 Heat of formation + Delta-G solvation = -16.787445 kcal Electronic energy + Delta-G solvation = -16461.361097 eV Core-core repulsion = 13946.375410 eV Total energy + Delta-G solvation = -2514.985686 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.06091 -37.15764 -34.86241 -32.48182 -30.52634 -28.55160 -28.01147 -26.65684 -25.89341 -23.38226 -21.01940 -19.49374 -17.56277 -16.91745 -15.89723 -15.42510 -14.96726 -14.35397 -13.96040 -13.69845 -13.42518 -12.95080 -12.57929 -12.35527 -12.21672 -12.12729 -12.03546 -11.94838 -11.71863 -11.47374 -11.42685 -11.01164 -10.88633 -10.50309 -10.08665 -9.73290 -9.55407 -9.43221 -8.79867 -8.56521 -7.63724 -6.05983 -4.03962 3.27460 3.28694 3.36612 3.41219 3.73126 4.03437 4.42134 4.74490 4.82920 4.96870 5.16001 5.20632 5.28897 5.58975 5.67313 5.73154 5.76714 5.81655 5.92662 5.94449 5.96284 6.01888 6.12070 6.16557 6.26111 6.32331 6.38567 6.62664 6.71442 7.00175 7.40722 7.64459 8.32694 8.50483 8.97073 9.06968 9.54780 11.07489 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.038924 B = 0.008147 C = 0.007790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.175173 B = 3435.926908 C = 3593.561788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.592 5.592 3 C 0.215 3.785 4 C -0.524 4.524 5 H 0.075 0.925 6 C 0.071 3.929 7 N -0.898 5.898 8 Si 0.874 3.126 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.264 1.264 12 C 0.545 3.455 13 O -0.538 6.538 14 C -0.151 4.151 15 C -0.110 4.110 16 C -0.142 4.142 17 C -0.109 4.109 18 C -0.122 4.122 19 C -0.112 4.112 20 H 0.043 0.957 21 H 0.067 0.933 22 H 0.071 0.929 23 H 0.038 0.962 24 H 0.025 0.975 25 H 0.264 0.736 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.096 0.904 30 H 0.102 0.898 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.428 -11.938 -6.422 16.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.323 5.323 3 C 0.095 3.905 4 C -0.563 4.563 5 H 0.093 0.907 6 C -0.131 4.131 7 N -0.537 5.537 8 Si 0.701 3.299 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.189 1.189 12 C 0.331 3.669 13 O -0.415 6.415 14 C -0.154 4.154 15 C -0.167 4.167 16 C -0.179 4.179 17 C -0.109 4.109 18 C -0.179 4.179 19 C -0.169 4.169 20 H 0.061 0.939 21 H 0.086 0.914 22 H 0.090 0.910 23 H 0.056 0.944 24 H 0.043 0.957 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.114 0.886 30 H 0.120 0.880 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.702 -11.752 -6.267 15.910 hybrid contribution 0.344 0.773 -0.602 1.038 sum -8.358 -10.979 -6.870 15.414 Atomic orbital electron populations 1.21756 0.81174 1.02889 1.00370 1.47703 1.06152 1.06775 1.71687 1.19659 0.92349 0.80109 0.98396 1.21327 1.36710 1.06974 0.91270 0.90706 1.24863 0.95315 0.97394 0.95535 1.69900 1.41652 1.23539 1.18610 0.86870 0.78886 0.80785 0.83337 1.20140 1.20959 1.18912 1.19268 0.87114 0.83764 0.76726 1.90659 1.14241 1.86883 1.49746 1.21668 1.03759 0.94162 0.95799 1.21323 0.99316 1.01852 0.94225 1.23269 0.97516 0.94823 1.02330 1.21689 0.94858 1.01170 0.93226 1.21445 1.02805 0.99752 0.93892 1.21361 0.94554 0.99109 1.01836 0.93879 0.91425 0.90991 0.94367 0.95721 0.92632 0.92143 0.91888 0.91545 0.88568 0.87973 0.91365 0.92213 0.91883 0.92471 0.92010 0.92085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.33 8.65 59.85 0.52 1.84 16 2 N -0.59 -12.58 2.86 -182.95 -0.52 -13.11 16 3 C 0.22 5.40 4.21 -5.19 -0.02 5.38 16 4 C -0.52 -15.28 9.94 -34.44 -0.34 -15.62 16 5 H 0.07 2.38 8.06 -52.49 -0.42 1.96 16 6 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 7 N -0.90 -28.00 13.96 55.43 0.77 -27.23 16 8 Si 0.87 21.87 27.47 -169.99 -4.67 17.20 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 11 H -0.26 -6.49 6.54 56.52 0.37 -6.12 16 12 C 0.55 11.63 5.98 -10.99 -0.07 11.57 16 13 O -0.54 -13.98 16.26 5.56 0.09 -13.89 16 14 C -0.15 -2.37 1.39 -155.66 -0.22 -2.59 16 15 C -0.11 -1.36 8.80 37.16 0.33 -1.03 16 16 C -0.14 -2.06 9.03 -26.69 -0.24 -2.30 16 17 C -0.11 -1.50 1.77 -154.47 -0.27 -1.78 16 18 C -0.12 -1.93 8.81 37.15 0.33 -1.60 16 19 C -0.11 -1.14 8.72 37.15 0.32 -0.82 16 20 H 0.04 0.59 7.52 -51.93 -0.39 0.20 16 21 H 0.07 0.96 4.98 -51.93 -0.26 0.70 16 22 H 0.07 1.20 8.10 -51.93 -0.42 0.78 16 23 H 0.04 1.04 6.56 -51.93 -0.34 0.70 16 24 H 0.02 0.58 7.50 -51.93 -0.39 0.19 16 25 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.63 6.98 -51.93 -0.36 0.27 16 28 H 0.07 0.76 5.99 -51.93 -0.31 0.44 16 29 H 0.10 1.13 8.05 -51.93 -0.42 0.71 16 30 H 0.10 1.69 7.86 -51.93 -0.41 1.28 16 31 H 0.07 1.19 6.99 -51.93 -0.36 0.83 16 32 H 0.06 0.79 7.93 -51.93 -0.41 0.38 16 33 H 0.06 1.16 7.90 -51.93 -0.41 0.75 16 34 H 0.06 0.51 7.28 -51.93 -0.38 0.13 16 35 H 0.06 0.58 7.93 -51.93 -0.41 0.17 16 36 H 0.06 0.58 8.12 -51.93 -0.42 0.16 16 LS Contribution 288.25 15.07 4.34 4.34 Total: -1.00 -33.83 288.25 -5.45 -39.28 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -5.71 Total: -1.66 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: 0.24 Total: -4.95 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: 0.25 Total: -40.33 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: 0.09 Total: -13.89 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -33.83 -5.45 -39.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702131506.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.491 kcal (2) G-P(sol) polarization free energy of solvation -33.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds