Wall clock time and date at job start Mon Mar 30 2020 02:42:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 O 1.42897 * 110.05476 * 2 1
4 4 C 1.54269 * 110.03323 * 121.41609 * 2 1 3
5 5 C 1.54888 * 104.19569 * 142.89650 * 4 2 1
6 6 C 1.54894 * 102.74656 * 322.05460 * 5 4 2
7 7 C 1.53872 * 110.03174 * 238.58442 * 2 1 3
8 8 H 1.09004 * 110.07173 * 121.40854 * 7 2 1
9 9 N 1.46503 * 110.03183 * 359.97438 * 7 2 1
10 10 C 1.36928 * 120.00553 * 268.12294 * 9 7 2
11 11 H 1.08005 * 120.00017 * 62.98805 * 10 9 7
12 12 C 1.38815 * 120.00437 * 242.99612 * 10 9 7
13 13 N 1.31613 * 120.00029 * 189.26344 * 12 10 9
14 14 Si 1.86795 * 119.99492 * 9.25934 * 12 10 9
15 15 H 1.48507 * 109.47468 * 86.27721 * 14 12 10
16 16 H 1.48506 * 109.46869 * 206.26905 * 14 12 10
17 17 H 1.48496 * 109.47799 * 326.27291 * 14 12 10
18 18 C 1.46500 * 119.99391 * 88.12739 * 9 7 2
19 19 C 1.53004 * 117.51565 * 170.83901 * 18 9 7
20 20 C 1.52997 * 60.00214 * 107.47486 * 19 18 9
21 21 H 1.08999 * 109.46997 * 165.44242 * 1 2 3
22 22 H 1.09002 * 109.47096 * 285.43754 * 1 2 3
23 23 H 1.08999 * 109.47073 * 45.43961 * 1 2 3
24 24 H 0.96701 * 113.99895 * 58.58139 * 3 2 1
25 25 H 1.09006 * 110.48617 * 24.21374 * 4 2 1
26 26 H 1.09004 * 110.59591 * 261.62961 * 4 2 1
27 27 H 1.09003 * 110.75125 * 203.74493 * 5 4 2
28 28 H 1.08999 * 110.75396 * 80.37245 * 5 4 2
29 29 H 1.08994 * 110.48929 * 279.26865 * 6 5 4
30 30 H 1.08999 * 110.48350 * 156.61736 * 6 5 4
31 31 H 0.97001 * 119.99618 * 180.02562 * 13 12 10
32 32 H 1.08999 * 115.55793 * 25.13315 * 18 9 7
33 33 H 1.09001 * 117.49631 * 214.96955 * 19 18 9
34 34 H 1.09000 * 117.49848 * 359.97438 * 19 18 9
35 35 H 1.08996 * 117.50122 * 252.51133 * 20 19 18
36 36 H 1.09003 * 117.49386 * 107.48659 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0201 1.3423 0.0000
4 6 2.0585 -0.7555 1.2369
5 6 3.3138 -1.5007 0.7191
6 6 2.8875 -1.9407 -0.7035
7 6 2.0571 -0.7535 -1.2337
8 1 2.6865 -0.0957 -1.8332
9 7 0.9359 -1.2456 -2.0381
10 6 0.4373 -2.5023 -1.8216
11 1 -0.0093 -2.7495 -0.8697
12 6 0.5059 -3.4588 -2.8253
13 7 -0.1303 -4.6028 -2.6887
14 14 1.5012 -3.1220 -4.3697
15 1 2.9171 -3.5066 -4.1399
16 1 0.9496 -3.9159 -5.4970
17 1 1.4284 -1.6762 -4.7002
18 6 0.3482 -0.3929 -3.0743
19 6 -0.6700 -1.0311 -4.0214
20 6 -1.1369 -0.0475 -2.9465
21 1 -0.3633 -0.9947 -0.2583
22 1 -0.3633 0.2736 0.9906
23 1 -0.3633 0.7211 -0.7322
24 1 1.7223 1.8697 0.7539
25 1 1.3143 -1.4660 1.5967
26 1 2.3294 -0.0552 2.0271
27 1 3.5325 -2.3678 1.3423
28 1 4.1710 -0.8289 0.6752
29 1 2.2772 -2.8425 -0.6571
30 1 3.7637 -2.1036 -1.3310
31 1 -0.0820 -5.2713 -3.3900
32 1 1.0087 0.3703 -3.4858
33 1 -0.6792 -0.6878 -5.0559
34 1 -0.9025 -2.0857 -3.8738
35 1 -1.6766 -0.4550 -2.0916
36 1 -1.4533 0.9429 -3.2739
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000706767415.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:42:43
Heat of formation + Delta-G solvation = 0.481413 kcal
Electronic energy + Delta-G solvation = -17194.777764 eV
Core-core repulsion = 14680.540911 eV
Total energy + Delta-G solvation = -2514.236853 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 225.147 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-39.09261 -36.67581 -34.43293 -32.45991 -31.14890 -29.43861 -26.74754 -24.86378
-23.46025 -21.51740 -20.34543 -19.95822 -18.61618 -16.71215 -15.88204 -15.47159
-15.08392 -14.58617 -13.79117 -13.54257 -13.25723 -12.82296 -12.61884 -12.15604
-11.78586 -11.45893 -11.17426 -11.01632 -10.81856 -10.58237 -10.42853 -10.25062
-10.22191 -9.96039 -9.85830 -9.62417 -9.32809 -9.23325 -8.93561 -8.42201
-6.31647 -5.99341 -3.83513 3.39160 3.47648 3.58846 4.51555 4.64715
4.95265 5.04720 5.24321 5.31588 5.41543 5.57394 5.94887 5.97144
6.01854 6.12773 6.15896 6.22430 6.28989 6.31905 6.42103 6.54169
6.56540 6.61193 6.61933 6.69171 6.84735 6.98381 7.06571 7.25552
7.30278 7.38371 8.08780 8.22583 8.55861 9.04932 9.59869 10.16520
11.04690
Molecular weight = 225.15amu
Principal moments of inertia in cm(-1)
A = 0.027988 B = 0.013549 C = 0.011189
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1000.189025 B = 2066.152609 C = 2501.747736
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.165 4.165
2 C 0.106 3.894
3 O -0.566 6.566
4 C -0.142 4.142
5 C -0.120 4.120
6 C -0.127 4.127
7 C 0.185 3.815
8 H 0.052 0.948
9 N -0.564 5.564
10 C -0.279 4.279
11 H 0.070 0.930
12 C 0.060 3.940
13 N -0.897 5.897
14 Si 0.880 3.120
15 H -0.290 1.290
16 H -0.301 1.301
17 H -0.246 1.246
18 C 0.125 3.875
19 C -0.202 4.202
20 C -0.212 4.212
21 H 0.097 0.903
22 H 0.025 0.975
23 H 0.060 0.940
24 H 0.361 0.639
25 H 0.070 0.930
26 H 0.054 0.946
27 H 0.058 0.942
28 H 0.057 0.943
29 H 0.106 0.894
30 H 0.052 0.948
31 H 0.265 0.735
32 H 0.086 0.914
33 H 0.070 0.930
34 H 0.113 0.887
35 H 0.091 0.909
36 H 0.068 0.932
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.066 7.944 3.923 9.375
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.222 4.222
2 C 0.064 3.936
3 O -0.371 6.371
4 C -0.180 4.180
5 C -0.158 4.158
6 C -0.164 4.164
7 C 0.079 3.921
8 H 0.070 0.930
9 N -0.283 5.283
10 C -0.407 4.407
11 H 0.087 0.913
12 C -0.143 4.143
13 N -0.536 5.536
14 Si 0.708 3.292
15 H -0.218 1.218
16 H -0.228 1.228
17 H -0.169 1.169
18 C 0.017 3.983
19 C -0.240 4.240
20 C -0.253 4.253
21 H 0.116 0.884
22 H 0.044 0.956
23 H 0.079 0.921
24 H 0.207 0.793
25 H 0.089 0.911
26 H 0.073 0.927
27 H 0.077 0.923
28 H 0.075 0.925
29 H 0.124 0.876
30 H 0.071 0.929
31 H 0.075 0.925
32 H 0.104 0.896
33 H 0.089 0.911
34 H 0.131 0.869
35 H 0.109 0.891
36 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges 3.325 7.536 3.288 8.869
hybrid contribution 0.070 0.221 -0.352 0.422
sum 3.395 7.757 2.935 8.962
Atomic orbital electron populations
1.22561 0.95173 1.05629 0.98885 1.22723 0.93452 0.80904 0.96553
1.86553 1.75947 1.24423 1.50158 1.22962 0.98257 0.99505 0.97243
1.22388 0.96915 0.98959 0.97515 1.22673 0.98988 1.00890 0.93888
1.20965 0.88282 0.92966 0.89916 0.92987 1.43637 1.33733 1.12931
1.38047 1.18296 1.36086 0.85304 1.01057 0.91259 1.26008 0.95252
0.94372 0.98680 1.69826 1.41992 1.07253 1.34490 0.86931 0.79834
0.79838 0.82627 1.21752 1.22795 1.16926 1.21195 0.87897 0.95473
0.93696 1.23379 1.06432 1.00620 0.93614 1.23388 1.02457 0.97848
1.01574 0.88407 0.95624 0.92114 0.79341 0.91103 0.92705 0.92321
0.92463 0.87609 0.92947 0.92523 0.89635 0.91118 0.86920 0.89071
0.91343
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -3.03 7.05 37.16 0.26 -2.77 16
2 C 0.11 1.91 1.34 -89.50 -0.12 1.79 16
3 O -0.57 -9.55 12.91 -35.23 -0.45 -10.01 16
4 C -0.14 -2.31 6.06 -25.07 -0.15 -2.46 16
5 C -0.12 -1.97 6.91 -24.74 -0.17 -2.14 16
6 C -0.13 -2.50 6.23 -25.07 -0.16 -2.66 16
7 C 0.19 3.80 3.25 -66.81 -0.22 3.59 16
8 H 0.05 1.10 7.93 -51.93 -0.41 0.69 16
9 N -0.56 -12.64 0.79 -156.87 -0.12 -12.76 16
10 C -0.28 -7.11 5.62 -15.06 -0.08 -7.20 16
11 H 0.07 1.96 7.04 -52.48 -0.37 1.59 16
12 C 0.06 1.62 4.05 -17.43 -0.07 1.55 16
13 N -0.90 -25.88 13.97 55.49 0.78 -25.10 16
14 Si 0.88 21.57 25.45 -169.99 -4.33 17.25 16
15 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16
16 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16
17 H -0.25 -5.73 4.89 56.52 0.28 -5.45 16
18 C 0.13 2.67 4.24 -67.93 -0.29 2.38 16
19 C -0.20 -4.34 6.93 -26.73 -0.19 -4.53 16
20 C -0.21 -4.20 8.53 -26.73 -0.23 -4.43 16
21 H 0.10 2.09 4.87 -51.93 -0.25 1.84 16
22 H 0.02 0.41 8.09 -51.93 -0.42 -0.01 16
23 H 0.06 1.13 6.20 -51.93 -0.32 0.81 16
24 H 0.36 4.58 9.07 45.56 0.41 4.99 16
25 H 0.07 1.20 7.86 -51.93 -0.41 0.79 16
26 H 0.05 0.78 8.07 -51.93 -0.42 0.36 16
27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16
28 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16
29 H 0.11 2.39 6.07 -51.93 -0.32 2.08 16
30 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16
31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16
32 H 0.09 1.76 8.14 -51.93 -0.42 1.33 16
33 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16
34 H 0.11 2.77 4.97 -51.93 -0.26 2.51 16
35 H 0.09 1.91 7.36 -51.93 -0.38 1.53 16
36 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16
LS Contribution 267.10 15.07 4.03 4.03
Total: -1.00 -27.72 267.10 -6.46 -34.18
By element:
Atomic # 1 Polarization: 14.23 SS G_CDS: -4.94 Total: 9.29 kcal
Atomic # 6 Polarization: -15.46 SS G_CDS: -1.41 Total: -16.87 kcal
Atomic # 7 Polarization: -38.52 SS G_CDS: 0.65 Total: -37.86 kcal
Atomic # 8 Polarization: -9.55 SS G_CDS: -0.45 Total: -10.01 kcal
Atomic # 14 Polarization: 21.57 SS G_CDS: -4.33 Total: 17.25 kcal
Total LS contribution 4.03 Total: 4.03 kcal
Total: -27.72 -6.46 -34.18 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000706767415.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 34.662 kcal
(2) G-P(sol) polarization free energy of solvation -27.724 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.938 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.457 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.181 kcal
(6) G-S(sol) free energy of system = (1) + (5) 0.481 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds