Wall clock time and date at job start Mon Mar 30 2020 02:42:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 O 1.42897 * 110.05476 * 2 1
4 4 C 1.54269 * 110.03323 * 121.41609 * 2 1 3
5 5 C 1.54888 * 104.19569 * 142.89650 * 4 2 1
6 6 C 1.54894 * 102.74656 * 322.05460 * 5 4 2
7 7 C 1.53872 * 110.03174 * 238.58442 * 2 1 3
8 8 H 1.09004 * 110.07173 * 121.40854 * 7 2 1
9 9 N 1.46503 * 110.03183 * 359.97438 * 7 2 1
10 10 C 1.36928 * 120.00553 * 268.12294 * 9 7 2
11 11 H 1.08005 * 120.00017 * 62.98805 * 10 9 7
12 12 C 1.38815 * 120.00437 * 242.99612 * 10 9 7
13 13 N 1.31613 * 120.00029 * 189.26344 * 12 10 9
14 14 Si 1.86795 * 119.99492 * 9.25934 * 12 10 9
15 15 H 1.48507 * 109.47468 * 86.27721 * 14 12 10
16 16 H 1.48506 * 109.46869 * 206.26905 * 14 12 10
17 17 H 1.48496 * 109.47799 * 326.27291 * 14 12 10
18 18 C 1.46500 * 119.99391 * 88.12739 * 9 7 2
19 19 C 1.53004 * 117.51565 * 170.83901 * 18 9 7
20 20 C 1.52997 * 60.00214 * 107.47486 * 19 18 9
21 21 H 1.08999 * 109.46997 * 165.44242 * 1 2 3
22 22 H 1.09002 * 109.47096 * 285.43754 * 1 2 3
23 23 H 1.08999 * 109.47073 * 45.43961 * 1 2 3
24 24 H 0.96701 * 113.99895 * 58.58139 * 3 2 1
25 25 H 1.09006 * 110.48617 * 24.21374 * 4 2 1
26 26 H 1.09004 * 110.59591 * 261.62961 * 4 2 1
27 27 H 1.09003 * 110.75125 * 203.74493 * 5 4 2
28 28 H 1.08999 * 110.75396 * 80.37245 * 5 4 2
29 29 H 1.08994 * 110.48929 * 279.26865 * 6 5 4
30 30 H 1.08999 * 110.48350 * 156.61736 * 6 5 4
31 31 H 0.97001 * 119.99618 * 180.02562 * 13 12 10
32 32 H 1.08999 * 115.55793 * 25.13315 * 18 9 7
33 33 H 1.09001 * 117.49631 * 214.96955 * 19 18 9
34 34 H 1.09000 * 117.49848 * 359.97438 * 19 18 9
35 35 H 1.08996 * 117.50122 * 252.51133 * 20 19 18
36 36 H 1.09003 * 117.49386 * 107.48659 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0201 1.3423 0.0000
4 6 2.0585 -0.7555 1.2369
5 6 3.3138 -1.5007 0.7191
6 6 2.8875 -1.9407 -0.7035
7 6 2.0571 -0.7535 -1.2337
8 1 2.6865 -0.0957 -1.8332
9 7 0.9359 -1.2456 -2.0381
10 6 0.4373 -2.5023 -1.8216
11 1 -0.0093 -2.7495 -0.8697
12 6 0.5059 -3.4588 -2.8253
13 7 -0.1303 -4.6028 -2.6887
14 14 1.5012 -3.1220 -4.3697
15 1 2.9171 -3.5066 -4.1399
16 1 0.9496 -3.9159 -5.4970
17 1 1.4284 -1.6762 -4.7002
18 6 0.3482 -0.3929 -3.0743
19 6 -0.6700 -1.0311 -4.0214
20 6 -1.1369 -0.0475 -2.9465
21 1 -0.3633 -0.9947 -0.2583
22 1 -0.3633 0.2736 0.9906
23 1 -0.3633 0.7211 -0.7322
24 1 1.7223 1.8697 0.7539
25 1 1.3143 -1.4660 1.5967
26 1 2.3294 -0.0552 2.0271
27 1 3.5325 -2.3678 1.3423
28 1 4.1710 -0.8289 0.6752
29 1 2.2772 -2.8425 -0.6571
30 1 3.7637 -2.1036 -1.3310
31 1 -0.0820 -5.2713 -3.3900
32 1 1.0087 0.3703 -3.4858
33 1 -0.6792 -0.6878 -5.0559
34 1 -0.9025 -2.0857 -3.8738
35 1 -1.6766 -0.4550 -2.0916
36 1 -1.4533 0.9429 -3.2739
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000706767415.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:42:43
Heat of formation + Delta-G solvation = -17.576580 kcal
Electronic energy + Delta-G solvation = -17195.560817 eV
Core-core repulsion = 14680.540911 eV
Total energy + Delta-G solvation = -2515.019906 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 225.147 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-40.63326 -38.30008 -35.87317 -34.36885 -32.91449 -30.90851 -28.41258 -26.55291
-25.11083 -23.17491 -21.96275 -21.52456 -20.27105 -18.57718 -17.31302 -17.09354
-16.60688 -16.42137 -15.33286 -15.31298 -15.03966 -14.30595 -14.10697 -13.89072
-13.33244 -13.30404 -12.91384 -12.66124 -12.36942 -12.21442 -12.03818 -11.89054
-11.75555 -11.67643 -11.47736 -11.23772 -11.05038 -10.75221 -10.58039 -10.41277
-8.27496 -7.96146 -5.90546 1.40550 1.45905 1.60017 2.48560 3.08142
3.11813 3.38061 3.59116 3.87486 4.00294 4.20412 4.29745 4.41076
4.51326 4.54293 4.60557 4.74231 4.80614 4.88845 4.94870 4.98273
5.06374 5.10592 5.22540 5.25166 5.36285 5.39753 5.48792 5.58308
5.70944 5.75422 6.03594 6.41940 7.07525 7.21384 7.60549 8.19069
8.99077
Molecular weight = 225.15amu
Principal moments of inertia in cm(-1)
A = 0.027988 B = 0.013549 C = 0.011189
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1000.189025 B = 2066.152609 C = 2501.747736
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.156 4.156
2 C 0.113 3.887
3 O -0.571 6.571
4 C -0.138 4.138
5 C -0.111 4.111
6 C -0.130 4.130
7 C 0.176 3.824
8 H 0.051 0.949
9 N -0.570 5.570
10 C -0.244 4.244
11 H 0.032 0.968
12 C 0.018 3.982
13 N -0.945 5.945
14 Si 0.926 3.074
15 H -0.298 1.298
16 H -0.310 1.310
17 H -0.222 1.222
18 C 0.112 3.888
19 C -0.214 4.214
20 C -0.190 4.190
21 H 0.060 0.940
22 H 0.048 0.952
23 H 0.056 0.944
24 H 0.383 0.617
25 H 0.058 0.942
26 H 0.086 0.914
27 H 0.070 0.930
28 H 0.075 0.925
29 H 0.069 0.931
30 H 0.052 0.948
31 H 0.262 0.738
32 H 0.104 0.896
33 H 0.094 0.906
34 H 0.078 0.922
35 H 0.073 0.927
36 H 0.102 0.898
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.050 10.627 4.335 12.171
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.213 4.213
2 C 0.071 3.929
3 O -0.378 6.378
4 C -0.175 4.175
5 C -0.149 4.149
6 C -0.168 4.168
7 C 0.070 3.930
8 H 0.069 0.931
9 N -0.291 5.291
10 C -0.374 4.374
11 H 0.050 0.950
12 C -0.181 4.181
13 N -0.587 5.587
14 Si 0.754 3.246
15 H -0.226 1.226
16 H -0.238 1.238
17 H -0.145 1.145
18 C 0.005 3.995
19 C -0.252 4.252
20 C -0.230 4.230
21 H 0.079 0.921
22 H 0.066 0.934
23 H 0.075 0.925
24 H 0.232 0.768
25 H 0.077 0.923
26 H 0.104 0.896
27 H 0.088 0.912
28 H 0.094 0.906
29 H 0.087 0.913
30 H 0.071 0.929
31 H 0.071 0.929
32 H 0.122 0.878
33 H 0.113 0.887
34 H 0.097 0.903
35 H 0.091 0.909
36 H 0.120 0.880
Dipole moment (debyes) X Y Z Total
from point charges 4.315 10.269 3.719 11.743
hybrid contribution -0.264 -0.536 -0.396 0.717
sum 4.050 9.734 3.323 11.054
Atomic orbital electron populations
1.22400 0.95657 1.03232 1.00023 1.22402 0.92864 0.81725 0.95907
1.86496 1.75871 1.23741 1.51712 1.22931 0.97680 0.99640 0.97299
1.22362 0.97579 0.99806 0.95141 1.22606 0.98395 0.99244 0.96530
1.21125 0.87675 0.93401 0.90765 0.93054 1.43649 1.34470 1.12172
1.38774 1.17939 1.33884 0.86475 0.99126 0.95026 1.26482 0.96317
0.94185 1.01123 1.69934 1.44615 1.08584 1.35521 0.86200 0.77861
0.80745 0.79825 1.22623 1.23812 1.14466 1.21397 0.88923 0.95748
0.93446 1.23337 1.07308 0.99197 0.95373 1.23324 1.00842 0.98735
1.00074 0.92072 0.93353 0.92477 0.76830 0.92305 0.89551 0.91161
0.90617 0.91256 0.92927 0.92925 0.87802 0.88723 0.90345 0.90880
0.88000
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -5.46 7.05 71.98 0.51 -4.95 16
2 C 0.11 3.80 1.34 -10.07 -0.01 3.79 16
3 O -0.57 -16.97 12.91 -148.98 -1.92 -18.89 16
4 C -0.14 -4.10 6.06 31.67 0.19 -3.91 16
5 C -0.11 -3.39 6.91 31.89 0.22 -3.17 16
6 C -0.13 -5.05 6.23 31.67 0.20 -4.85 16
7 C 0.18 6.98 3.25 45.72 0.15 7.13 16
8 H 0.05 2.05 7.93 -2.39 -0.02 2.03 16
9 N -0.57 -25.29 0.79 -650.23 -0.51 -25.80 16
10 C -0.24 -12.83 5.62 84.04 0.47 -12.35 16
11 H 0.03 1.91 7.04 -2.91 -0.02 1.89 16
12 C 0.02 0.97 4.05 84.86 0.34 1.32 16
13 N -0.94 -56.89 13.97 21.65 0.30 -56.59 16
14 Si 0.93 45.01 25.45 68.60 1.75 46.75 16
15 H -0.30 -14.77 7.11 99.48 0.71 -14.06 16
16 H -0.31 -15.46 7.11 99.48 0.71 -14.76 16
17 H -0.22 -9.83 4.89 99.48 0.49 -9.34 16
18 C 0.11 4.56 4.24 44.99 0.19 4.75 16
19 C -0.21 -8.87 6.93 30.59 0.21 -8.66 16
20 C -0.19 -7.11 8.53 30.60 0.26 -6.85 16
21 H 0.06 2.63 4.87 -2.39 -0.01 2.61 16
22 H 0.05 1.44 8.09 -2.39 -0.02 1.42 16
23 H 0.06 2.01 6.20 -2.39 -0.01 1.99 16
24 H 0.38 7.91 9.07 -74.06 -0.67 7.24 16
25 H 0.06 1.90 7.86 -2.38 -0.02 1.88 16
26 H 0.09 2.06 8.07 -2.38 -0.02 2.04 16
27 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16
28 H 0.08 2.06 8.14 -2.39 -0.02 2.05 16
29 H 0.07 3.22 6.07 -2.39 -0.01 3.21 16
30 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16
31 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16
32 H 0.10 3.90 8.14 -2.39 -0.02 3.88 16
33 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16
34 H 0.08 3.87 4.97 -2.39 -0.01 3.86 16
35 H 0.07 3.02 7.36 -2.39 -0.02 3.00 16
36 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16
Total: -1.00 -60.96 267.10 2.52 -58.44
By element:
Atomic # 1 Polarization: 23.68 SS G_CDS: 0.17 Total: 23.85 kcal
Atomic # 6 Polarization: -30.49 SS G_CDS: 2.73 Total: -27.76 kcal
Atomic # 7 Polarization: -82.18 SS G_CDS: -0.21 Total: -82.39 kcal
Atomic # 8 Polarization: -16.97 SS G_CDS: -1.92 Total: -18.89 kcal
Atomic # 14 Polarization: 45.01 SS G_CDS: 1.75 Total: 46.75 kcal
Total: -60.96 2.52 -58.44 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000706767415.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 40.863 kcal
(2) G-P(sol) polarization free energy of solvation -60.959 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.096 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.519 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.440 kcal
(6) G-S(sol) free energy of system = (1) + (5) -17.577 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds