Wall clock time and date at job start Mon Mar 30 2020 02:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42897 * 110.05476 * 2 1 4 4 C 1.54269 * 110.03323 * 121.41609 * 2 1 3 5 5 C 1.54888 * 104.19569 * 142.89650 * 4 2 1 6 6 C 1.54894 * 102.74656 * 322.05460 * 5 4 2 7 7 C 1.53872 * 110.03174 * 238.58442 * 2 1 3 8 8 H 1.09004 * 110.07173 * 121.40854 * 7 2 1 9 9 N 1.46503 * 110.03183 * 359.97438 * 7 2 1 10 10 C 1.36928 * 120.00553 * 268.12294 * 9 7 2 11 11 H 1.08005 * 120.00017 * 62.98805 * 10 9 7 12 12 C 1.38815 * 120.00437 * 242.99612 * 10 9 7 13 13 N 1.31613 * 120.00029 * 189.26344 * 12 10 9 14 14 Si 1.86795 * 119.99492 * 9.25934 * 12 10 9 15 15 H 1.48507 * 109.47468 * 86.27721 * 14 12 10 16 16 H 1.48506 * 109.46869 * 206.26905 * 14 12 10 17 17 H 1.48496 * 109.47799 * 326.27291 * 14 12 10 18 18 C 1.46500 * 119.99391 * 88.12739 * 9 7 2 19 19 C 1.53004 * 117.51565 * 170.83901 * 18 9 7 20 20 C 1.52997 * 60.00214 * 107.47486 * 19 18 9 21 21 H 1.08999 * 109.46997 * 165.44242 * 1 2 3 22 22 H 1.09002 * 109.47096 * 285.43754 * 1 2 3 23 23 H 1.08999 * 109.47073 * 45.43961 * 1 2 3 24 24 H 0.96701 * 113.99895 * 58.58139 * 3 2 1 25 25 H 1.09006 * 110.48617 * 24.21374 * 4 2 1 26 26 H 1.09004 * 110.59591 * 261.62961 * 4 2 1 27 27 H 1.09003 * 110.75125 * 203.74493 * 5 4 2 28 28 H 1.08999 * 110.75396 * 80.37245 * 5 4 2 29 29 H 1.08994 * 110.48929 * 279.26865 * 6 5 4 30 30 H 1.08999 * 110.48350 * 156.61736 * 6 5 4 31 31 H 0.97001 * 119.99618 * 180.02562 * 13 12 10 32 32 H 1.08999 * 115.55793 * 25.13315 * 18 9 7 33 33 H 1.09001 * 117.49631 * 214.96955 * 19 18 9 34 34 H 1.09000 * 117.49848 * 359.97438 * 19 18 9 35 35 H 1.08996 * 117.50122 * 252.51133 * 20 19 18 36 36 H 1.09003 * 117.49386 * 107.48659 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0201 1.3423 0.0000 4 6 2.0585 -0.7555 1.2369 5 6 3.3138 -1.5007 0.7191 6 6 2.8875 -1.9407 -0.7035 7 6 2.0571 -0.7535 -1.2337 8 1 2.6865 -0.0957 -1.8332 9 7 0.9359 -1.2456 -2.0381 10 6 0.4373 -2.5023 -1.8216 11 1 -0.0093 -2.7495 -0.8697 12 6 0.5059 -3.4588 -2.8253 13 7 -0.1303 -4.6028 -2.6887 14 14 1.5012 -3.1220 -4.3697 15 1 2.9171 -3.5066 -4.1399 16 1 0.9496 -3.9159 -5.4970 17 1 1.4284 -1.6762 -4.7002 18 6 0.3482 -0.3929 -3.0743 19 6 -0.6700 -1.0311 -4.0214 20 6 -1.1369 -0.0475 -2.9465 21 1 -0.3633 -0.9947 -0.2583 22 1 -0.3633 0.2736 0.9906 23 1 -0.3633 0.7211 -0.7322 24 1 1.7223 1.8697 0.7539 25 1 1.3143 -1.4660 1.5967 26 1 2.3294 -0.0552 2.0271 27 1 3.5325 -2.3678 1.3423 28 1 4.1710 -0.8289 0.6752 29 1 2.2772 -2.8425 -0.6571 30 1 3.7637 -2.1036 -1.3310 31 1 -0.0820 -5.2713 -3.3900 32 1 1.0087 0.3703 -3.4858 33 1 -0.6792 -0.6878 -5.0559 34 1 -0.9025 -2.0857 -3.8738 35 1 -1.6766 -0.4550 -2.0916 36 1 -1.4533 0.9429 -3.2739 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706767415.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:43 Heat of formation + Delta-G solvation = -17.576580 kcal Electronic energy + Delta-G solvation = -17195.560817 eV Core-core repulsion = 14680.540911 eV Total energy + Delta-G solvation = -2515.019906 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.63326 -38.30008 -35.87317 -34.36885 -32.91449 -30.90851 -28.41258 -26.55291 -25.11083 -23.17491 -21.96275 -21.52456 -20.27105 -18.57718 -17.31302 -17.09354 -16.60688 -16.42137 -15.33286 -15.31298 -15.03966 -14.30595 -14.10697 -13.89072 -13.33244 -13.30404 -12.91384 -12.66124 -12.36942 -12.21442 -12.03818 -11.89054 -11.75555 -11.67643 -11.47736 -11.23772 -11.05038 -10.75221 -10.58039 -10.41277 -8.27496 -7.96146 -5.90546 1.40550 1.45905 1.60017 2.48560 3.08142 3.11813 3.38061 3.59116 3.87486 4.00294 4.20412 4.29745 4.41076 4.51326 4.54293 4.60557 4.74231 4.80614 4.88845 4.94870 4.98273 5.06374 5.10592 5.22540 5.25166 5.36285 5.39753 5.48792 5.58308 5.70944 5.75422 6.03594 6.41940 7.07525 7.21384 7.60549 8.19069 8.99077 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.027988 B = 0.013549 C = 0.011189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.189025 B = 2066.152609 C = 2501.747736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.113 3.887 3 O -0.571 6.571 4 C -0.138 4.138 5 C -0.111 4.111 6 C -0.130 4.130 7 C 0.176 3.824 8 H 0.051 0.949 9 N -0.570 5.570 10 C -0.244 4.244 11 H 0.032 0.968 12 C 0.018 3.982 13 N -0.945 5.945 14 Si 0.926 3.074 15 H -0.298 1.298 16 H -0.310 1.310 17 H -0.222 1.222 18 C 0.112 3.888 19 C -0.214 4.214 20 C -0.190 4.190 21 H 0.060 0.940 22 H 0.048 0.952 23 H 0.056 0.944 24 H 0.383 0.617 25 H 0.058 0.942 26 H 0.086 0.914 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.052 0.948 31 H 0.262 0.738 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.050 10.627 4.335 12.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.071 3.929 3 O -0.378 6.378 4 C -0.175 4.175 5 C -0.149 4.149 6 C -0.168 4.168 7 C 0.070 3.930 8 H 0.069 0.931 9 N -0.291 5.291 10 C -0.374 4.374 11 H 0.050 0.950 12 C -0.181 4.181 13 N -0.587 5.587 14 Si 0.754 3.246 15 H -0.226 1.226 16 H -0.238 1.238 17 H -0.145 1.145 18 C 0.005 3.995 19 C -0.252 4.252 20 C -0.230 4.230 21 H 0.079 0.921 22 H 0.066 0.934 23 H 0.075 0.925 24 H 0.232 0.768 25 H 0.077 0.923 26 H 0.104 0.896 27 H 0.088 0.912 28 H 0.094 0.906 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.122 0.878 33 H 0.113 0.887 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 4.315 10.269 3.719 11.743 hybrid contribution -0.264 -0.536 -0.396 0.717 sum 4.050 9.734 3.323 11.054 Atomic orbital electron populations 1.22400 0.95657 1.03232 1.00023 1.22402 0.92864 0.81725 0.95907 1.86496 1.75871 1.23741 1.51712 1.22931 0.97680 0.99640 0.97299 1.22362 0.97579 0.99806 0.95141 1.22606 0.98395 0.99244 0.96530 1.21125 0.87675 0.93401 0.90765 0.93054 1.43649 1.34470 1.12172 1.38774 1.17939 1.33884 0.86475 0.99126 0.95026 1.26482 0.96317 0.94185 1.01123 1.69934 1.44615 1.08584 1.35521 0.86200 0.77861 0.80745 0.79825 1.22623 1.23812 1.14466 1.21397 0.88923 0.95748 0.93446 1.23337 1.07308 0.99197 0.95373 1.23324 1.00842 0.98735 1.00074 0.92072 0.93353 0.92477 0.76830 0.92305 0.89551 0.91161 0.90617 0.91256 0.92927 0.92925 0.87802 0.88723 0.90345 0.90880 0.88000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.46 7.05 71.98 0.51 -4.95 16 2 C 0.11 3.80 1.34 -10.07 -0.01 3.79 16 3 O -0.57 -16.97 12.91 -148.98 -1.92 -18.89 16 4 C -0.14 -4.10 6.06 31.67 0.19 -3.91 16 5 C -0.11 -3.39 6.91 31.89 0.22 -3.17 16 6 C -0.13 -5.05 6.23 31.67 0.20 -4.85 16 7 C 0.18 6.98 3.25 45.72 0.15 7.13 16 8 H 0.05 2.05 7.93 -2.39 -0.02 2.03 16 9 N -0.57 -25.29 0.79 -650.23 -0.51 -25.80 16 10 C -0.24 -12.83 5.62 84.04 0.47 -12.35 16 11 H 0.03 1.91 7.04 -2.91 -0.02 1.89 16 12 C 0.02 0.97 4.05 84.86 0.34 1.32 16 13 N -0.94 -56.89 13.97 21.65 0.30 -56.59 16 14 Si 0.93 45.01 25.45 68.60 1.75 46.75 16 15 H -0.30 -14.77 7.11 99.48 0.71 -14.06 16 16 H -0.31 -15.46 7.11 99.48 0.71 -14.76 16 17 H -0.22 -9.83 4.89 99.48 0.49 -9.34 16 18 C 0.11 4.56 4.24 44.99 0.19 4.75 16 19 C -0.21 -8.87 6.93 30.59 0.21 -8.66 16 20 C -0.19 -7.11 8.53 30.60 0.26 -6.85 16 21 H 0.06 2.63 4.87 -2.39 -0.01 2.61 16 22 H 0.05 1.44 8.09 -2.39 -0.02 1.42 16 23 H 0.06 2.01 6.20 -2.39 -0.01 1.99 16 24 H 0.38 7.91 9.07 -74.06 -0.67 7.24 16 25 H 0.06 1.90 7.86 -2.38 -0.02 1.88 16 26 H 0.09 2.06 8.07 -2.38 -0.02 2.04 16 27 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.08 2.06 8.14 -2.39 -0.02 2.05 16 29 H 0.07 3.22 6.07 -2.39 -0.01 3.21 16 30 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 32 H 0.10 3.90 8.14 -2.39 -0.02 3.88 16 33 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 34 H 0.08 3.87 4.97 -2.39 -0.01 3.86 16 35 H 0.07 3.02 7.36 -2.39 -0.02 3.00 16 36 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 Total: -1.00 -60.96 267.10 2.52 -58.44 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: 0.17 Total: 23.85 kcal Atomic # 6 Polarization: -30.49 SS G_CDS: 2.73 Total: -27.76 kcal Atomic # 7 Polarization: -82.18 SS G_CDS: -0.21 Total: -82.39 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -1.92 Total: -18.89 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.75 Total: 46.75 kcal Total: -60.96 2.52 -58.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706767415.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.863 kcal (2) G-P(sol) polarization free energy of solvation -60.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds