Wall clock time and date at job start Mon Mar 30 2020 03:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.46956 * 2 1 4 4 C 1.52997 * 109.46858 * 60.00508 * 3 2 1 5 5 C 1.53001 * 109.47184 * 300.00059 * 3 2 1 6 6 C 1.50700 * 109.46636 * 179.97438 * 3 2 1 7 7 O 1.21289 * 120.00542 * 2.74797 * 6 3 2 8 8 N 1.34780 * 119.99602 * 182.74820 * 6 3 2 9 9 C 1.37104 * 119.99834 * 185.43448 * 8 6 3 10 10 H 1.08001 * 119.99909 * 224.01179 * 9 8 6 11 11 C 1.38945 * 119.99515 * 44.01793 * 9 8 6 12 12 N 1.31408 * 120.00668 * 20.87381 * 11 9 8 13 13 Si 1.86804 * 119.99574 * 200.87787 * 11 9 8 14 14 H 1.48503 * 109.47421 * 180.02562 * 13 11 9 15 15 H 1.48503 * 109.47137 * 300.00042 * 13 11 9 16 16 H 1.48503 * 109.47250 * 59.99843 * 13 11 9 17 17 C 1.46496 * 120.00080 * 5.43421 * 8 6 3 18 18 C 1.53007 * 117.50085 * 188.68530 * 17 8 6 19 19 C 1.53008 * 60.00035 * 252.51266 * 18 17 8 20 20 H 1.09000 * 109.46865 * 299.99739 * 1 2 3 21 21 H 1.09000 * 109.46996 * 60.00010 * 1 2 3 22 22 H 1.08998 * 109.46989 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46865 * 240.00261 * 2 1 3 24 24 H 1.09000 * 109.46996 * 119.99989 * 2 1 3 25 25 H 1.08998 * 109.46888 * 179.97438 * 4 3 2 26 26 H 1.09005 * 109.46761 * 299.99196 * 4 3 2 27 27 H 1.09000 * 109.47741 * 59.99614 * 4 3 2 28 28 H 1.09003 * 109.47022 * 308.84443 * 5 3 2 29 29 H 1.08998 * 109.46859 * 68.84674 * 5 3 2 30 30 H 1.09000 * 109.46939 * 188.84394 * 5 3 2 31 31 H 0.97002 * 119.99762 * 2.62911 * 12 11 9 32 32 H 1.08998 * 115.55385 * 334.39556 * 17 8 6 33 33 H 1.08994 * 117.49356 * 0.02562 * 18 17 8 34 34 H 1.08993 * 117.49724 * 145.02418 * 18 17 8 35 35 H 1.09001 * 117.49775 * 252.51076 * 19 18 17 36 36 H 1.08995 * 117.51847 * 107.48031 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.5301 2.1637 1.2493 5 6 1.5300 2.1638 -1.2492 6 6 3.5470 1.4425 0.0006 7 8 4.1535 0.3933 -0.0493 8 7 4.2209 2.6084 0.0567 9 6 5.5874 2.6164 -0.0549 10 1 6.1799 3.2275 0.6098 11 6 6.2098 1.8384 -1.0233 12 7 5.5322 1.4277 -2.0717 13 14 8.0098 1.3761 -0.8349 14 1 8.4325 0.5488 -1.9935 15 1 8.8347 2.6097 -0.7810 16 1 8.1936 0.6026 0.4194 17 6 3.4933 3.8670 0.2369 18 6 4.2849 5.1681 0.0897 19 6 3.8257 4.7044 1.4736 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 1.8938 3.1912 1.2495 26 1 0.4400 2.1637 1.2492 27 1 1.8934 1.6499 2.1393 28 1 1.7586 1.5669 -2.1322 29 1 0.4515 2.3027 -1.1737 30 1 2.0166 3.1357 -1.3317 31 1 4.6084 1.6992 -2.1889 32 1 2.4588 3.8654 -0.1065 33 1 5.3469 5.0874 -0.1417 34 1 3.7713 6.0226 -0.3508 35 1 3.0100 5.2539 1.9435 36 1 4.5855 4.3186 2.1532 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706783300.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:19 Heat of formation + Delta-G solvation = -2.794885 kcal Electronic energy + Delta-G solvation = -17004.596100 eV Core-core repulsion = 14490.217177 eV Total energy + Delta-G solvation = -2514.378923 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.62361 -36.51976 -35.53151 -32.87356 -30.95932 -29.53893 -26.93024 -24.71868 -24.24533 -21.79823 -21.54784 -20.30455 -18.42183 -16.83096 -15.86374 -15.18677 -14.41389 -14.08860 -13.79194 -13.68223 -13.45281 -13.39541 -12.47651 -12.20265 -11.90112 -11.63066 -11.49314 -11.22014 -10.94361 -10.74357 -10.72267 -10.60832 -10.20894 -10.12921 -10.07061 -9.99170 -9.72329 -9.45693 -8.57173 -7.97644 -7.24727 -6.37754 -3.85532 3.42239 3.53418 3.67446 3.97660 4.35386 4.67797 4.78276 5.19214 5.24595 5.39795 5.47462 5.49812 5.65579 5.68990 5.76886 5.84958 5.85484 6.01790 6.03773 6.16527 6.18391 6.23149 6.33018 6.37499 6.46704 6.53176 6.58410 6.73089 6.83250 6.90373 6.92938 7.93299 8.44503 8.87018 9.24542 9.60799 10.16082 10.94431 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.026068 B = 0.012254 C = 0.009416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.850950 B = 2284.391555 C = 2972.850517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.095 4.095 3 C -0.079 4.079 4 C -0.155 4.155 5 C -0.147 4.147 6 C 0.477 3.523 7 O -0.542 6.542 8 N -0.431 5.431 9 C -0.426 4.426 10 H 0.068 0.932 11 C 0.037 3.963 12 N -0.852 5.852 13 Si 1.078 2.922 14 H -0.282 1.282 15 H -0.289 1.289 16 H -0.285 1.285 17 C 0.059 3.941 18 C -0.179 4.179 19 C -0.205 4.205 20 H 0.053 0.947 21 H 0.053 0.947 22 H 0.048 0.952 23 H 0.066 0.934 24 H 0.062 0.938 25 H 0.076 0.924 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.270 0.730 32 H 0.124 0.876 33 H 0.107 0.893 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.551 4.362 3.634 10.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.133 4.133 3 C -0.082 4.082 4 C -0.212 4.212 5 C -0.204 4.204 6 C 0.265 3.735 7 O -0.420 6.420 8 N -0.152 5.152 9 C -0.552 4.552 10 H 0.086 0.914 11 C -0.175 4.175 12 N -0.484 5.484 13 Si 0.905 3.095 14 H -0.207 1.207 15 H -0.216 1.216 16 H -0.212 1.212 17 C -0.046 4.046 18 C -0.217 4.217 19 C -0.244 4.244 20 H 0.072 0.928 21 H 0.072 0.928 22 H 0.067 0.933 23 H 0.084 0.916 24 H 0.081 0.919 25 H 0.094 0.906 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.141 0.859 33 H 0.125 0.875 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.001 2.938 2.878 8.119 hybrid contribution -1.311 1.032 0.782 1.843 sum -8.312 3.970 3.660 9.912 Atomic orbital electron populations 1.21899 0.96584 1.00930 1.01493 1.21270 0.94123 0.94957 1.02929 1.20682 0.94703 0.96705 0.96151 1.22293 1.00253 1.01812 0.96850 1.22083 1.00197 1.00921 0.97201 1.20022 0.87761 0.84310 0.81410 1.90575 1.69524 1.30661 1.51276 1.42932 1.05805 1.01386 1.65098 1.19751 0.80234 1.34812 1.20412 0.91436 1.26190 1.06468 0.94030 0.90847 1.70595 1.11924 1.41088 1.24762 0.83391 0.73366 0.76324 0.76406 1.20692 1.21594 1.21185 1.22307 0.96383 0.85384 1.00551 1.23139 1.02504 0.96990 0.99092 1.23286 1.03636 1.05437 0.92074 0.92807 0.92797 0.93274 0.91574 0.91946 0.90578 0.92645 0.92837 0.92328 0.92519 0.91568 0.91873 0.85941 0.87464 0.89878 0.89792 0.89093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.22 37.16 0.34 -1.76 16 2 C -0.09 -1.74 4.27 -26.73 -0.11 -1.85 16 3 C -0.08 -1.52 0.52 -155.66 -0.08 -1.60 16 4 C -0.16 -2.54 7.72 37.16 0.29 -2.25 16 5 C -0.15 -2.55 7.51 37.16 0.28 -2.27 16 6 C 0.48 12.12 4.97 -10.98 -0.05 12.07 16 7 O -0.54 -16.27 14.14 5.55 0.08 -16.19 16 8 N -0.43 -10.84 2.61 -107.72 -0.28 -11.12 16 9 C -0.43 -11.90 7.67 -14.93 -0.11 -12.01 16 10 H 0.07 1.86 7.51 -52.49 -0.39 1.47 16 11 C 0.04 1.07 4.31 -17.47 -0.08 0.99 16 12 N -0.85 -26.23 12.57 55.50 0.70 -25.54 16 13 Si 1.08 26.15 29.97 -169.99 -5.09 21.06 16 14 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 15 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 16 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 17 C 0.06 1.18 3.65 -67.92 -0.25 0.93 16 18 C -0.18 -3.31 9.82 -26.72 -0.26 -3.57 16 19 C -0.21 -3.60 9.68 -26.72 -0.26 -3.86 16 20 H 0.05 0.68 6.43 -51.93 -0.33 0.35 16 21 H 0.05 0.70 6.64 -51.93 -0.34 0.36 16 22 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 23 H 0.07 1.34 8.07 -51.93 -0.42 0.92 16 24 H 0.06 1.21 8.12 -51.93 -0.42 0.78 16 25 H 0.08 1.22 3.89 -51.93 -0.20 1.02 16 26 H 0.05 0.75 6.43 -51.93 -0.33 0.41 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.06 1.09 8.12 -51.93 -0.42 0.67 16 29 H 0.06 0.79 6.91 -51.93 -0.36 0.43 16 30 H 0.07 1.17 5.03 -51.93 -0.26 0.91 16 31 H 0.27 8.36 7.13 -40.82 -0.29 8.07 16 32 H 0.12 2.18 3.56 -51.93 -0.18 1.99 16 33 H 0.11 2.23 6.89 -51.93 -0.36 1.88 16 34 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.09 1.75 8.14 -51.93 -0.42 1.32 16 LS Contribution 275.40 15.07 4.15 4.15 Total: -1.00 -32.94 275.40 -5.98 -38.93 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -5.23 Total: 3.91 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: -0.30 Total: -15.19 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: 0.42 Total: -36.66 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: 0.08 Total: -16.19 kcal Atomic # 14 Polarization: 26.15 SS G_CDS: -5.09 Total: 21.06 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -32.94 -5.98 -38.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706783300.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.132 kcal (2) G-P(sol) polarization free energy of solvation -32.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds