Wall clock time and date at job start Mon Mar 30 2020 03:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.46956 * 2 1 4 4 C 1.52997 * 109.46858 * 60.00508 * 3 2 1 5 5 C 1.53001 * 109.47184 * 300.00059 * 3 2 1 6 6 C 1.50700 * 109.46636 * 179.97438 * 3 2 1 7 7 O 1.21289 * 120.00542 * 2.74797 * 6 3 2 8 8 N 1.34780 * 119.99602 * 182.74820 * 6 3 2 9 9 C 1.37104 * 119.99834 * 185.43448 * 8 6 3 10 10 H 1.08001 * 119.99909 * 224.01179 * 9 8 6 11 11 C 1.38945 * 119.99515 * 44.01793 * 9 8 6 12 12 N 1.31408 * 120.00668 * 20.87381 * 11 9 8 13 13 Si 1.86804 * 119.99574 * 200.87787 * 11 9 8 14 14 H 1.48503 * 109.47421 * 180.02562 * 13 11 9 15 15 H 1.48503 * 109.47137 * 300.00042 * 13 11 9 16 16 H 1.48503 * 109.47250 * 59.99843 * 13 11 9 17 17 C 1.46496 * 120.00080 * 5.43421 * 8 6 3 18 18 C 1.53007 * 117.50085 * 188.68530 * 17 8 6 19 19 C 1.53008 * 60.00035 * 252.51266 * 18 17 8 20 20 H 1.09000 * 109.46865 * 299.99739 * 1 2 3 21 21 H 1.09000 * 109.46996 * 60.00010 * 1 2 3 22 22 H 1.08998 * 109.46989 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46865 * 240.00261 * 2 1 3 24 24 H 1.09000 * 109.46996 * 119.99989 * 2 1 3 25 25 H 1.08998 * 109.46888 * 179.97438 * 4 3 2 26 26 H 1.09005 * 109.46761 * 299.99196 * 4 3 2 27 27 H 1.09000 * 109.47741 * 59.99614 * 4 3 2 28 28 H 1.09003 * 109.47022 * 308.84443 * 5 3 2 29 29 H 1.08998 * 109.46859 * 68.84674 * 5 3 2 30 30 H 1.09000 * 109.46939 * 188.84394 * 5 3 2 31 31 H 0.97002 * 119.99762 * 2.62911 * 12 11 9 32 32 H 1.08998 * 115.55385 * 334.39556 * 17 8 6 33 33 H 1.08994 * 117.49356 * 0.02562 * 18 17 8 34 34 H 1.08993 * 117.49724 * 145.02418 * 18 17 8 35 35 H 1.09001 * 117.49775 * 252.51076 * 19 18 17 36 36 H 1.08995 * 117.51847 * 107.48031 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.5301 2.1637 1.2493 5 6 1.5300 2.1638 -1.2492 6 6 3.5470 1.4425 0.0006 7 8 4.1535 0.3933 -0.0493 8 7 4.2209 2.6084 0.0567 9 6 5.5874 2.6164 -0.0549 10 1 6.1799 3.2275 0.6098 11 6 6.2098 1.8384 -1.0233 12 7 5.5322 1.4277 -2.0717 13 14 8.0098 1.3761 -0.8349 14 1 8.4325 0.5488 -1.9935 15 1 8.8347 2.6097 -0.7810 16 1 8.1936 0.6026 0.4194 17 6 3.4933 3.8670 0.2369 18 6 4.2849 5.1681 0.0897 19 6 3.8257 4.7044 1.4736 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 1.8938 3.1912 1.2495 26 1 0.4400 2.1637 1.2492 27 1 1.8934 1.6499 2.1393 28 1 1.7586 1.5669 -2.1322 29 1 0.4515 2.3027 -1.1737 30 1 2.0166 3.1357 -1.3317 31 1 4.6084 1.6992 -2.1889 32 1 2.4588 3.8654 -0.1065 33 1 5.3469 5.0874 -0.1417 34 1 3.7713 6.0226 -0.3508 35 1 3.0100 5.2539 1.9435 36 1 4.5855 4.3186 2.1532 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706783300.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:18 Heat of formation + Delta-G solvation = -24.074638 kcal Electronic energy + Delta-G solvation = -17005.518859 eV Core-core repulsion = 14490.217177 eV Total energy + Delta-G solvation = -2515.301683 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.38054 -38.14596 -37.27003 -34.88879 -32.80852 -31.03076 -28.27188 -26.74713 -25.70878 -23.35060 -23.07283 -22.12240 -20.09484 -18.79282 -17.53119 -16.91250 -16.05638 -15.88468 -15.55174 -15.37122 -15.06037 -14.94353 -13.99966 -13.68733 -13.32848 -13.23611 -12.94222 -12.82870 -12.68114 -12.31527 -12.21642 -12.12275 -12.00811 -11.77034 -11.70316 -11.52610 -11.49247 -11.00630 -10.63673 -9.92341 -9.26812 -8.59671 -6.07135 1.44089 1.56818 1.72934 2.12842 2.44832 2.94818 3.07116 3.33377 3.73920 3.85150 3.98330 4.03248 4.16256 4.27954 4.37389 4.47925 4.57301 4.66415 4.76036 4.81530 4.86427 4.93238 5.00679 5.07312 5.12302 5.16771 5.18615 5.29552 5.40813 5.46325 5.55673 5.73803 6.19140 6.86896 7.18604 7.54677 8.17146 8.69964 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.026068 B = 0.012254 C = 0.009416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.850950 B = 2284.391555 C = 2972.850517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.093 4.093 3 C -0.074 4.074 4 C -0.148 4.148 5 C -0.141 4.141 6 C 0.461 3.539 7 O -0.605 6.605 8 N -0.447 5.447 9 C -0.430 4.430 10 H 0.063 0.937 11 C -0.014 4.014 12 N -0.886 5.886 13 Si 1.116 2.884 14 H -0.286 1.286 15 H -0.255 1.255 16 H -0.288 1.288 17 C 0.033 3.967 18 C -0.178 4.178 19 C -0.181 4.181 20 H 0.075 0.925 21 H 0.068 0.932 22 H 0.060 0.940 23 H 0.031 0.969 24 H 0.041 0.959 25 H 0.082 0.918 26 H 0.097 0.903 27 H 0.039 0.961 28 H 0.034 0.966 29 H 0.103 0.897 30 H 0.062 0.938 31 H 0.256 0.744 32 H 0.153 0.847 33 H 0.075 0.925 34 H 0.121 0.879 35 H 0.130 0.870 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.874 6.390 4.654 13.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.132 4.132 3 C -0.078 4.078 4 C -0.205 4.205 5 C -0.198 4.198 6 C 0.251 3.749 7 O -0.488 6.488 8 N -0.167 5.167 9 C -0.557 4.557 10 H 0.081 0.919 11 C -0.219 4.219 12 N -0.519 5.519 13 Si 0.938 3.062 14 H -0.212 1.212 15 H -0.180 1.180 16 H -0.214 1.214 17 C -0.071 4.071 18 C -0.216 4.216 19 C -0.219 4.219 20 H 0.094 0.906 21 H 0.087 0.913 22 H 0.079 0.921 23 H 0.050 0.950 24 H 0.060 0.940 25 H 0.101 0.899 26 H 0.116 0.884 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.122 0.878 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.169 0.831 33 H 0.093 0.907 34 H 0.139 0.861 35 H 0.148 0.852 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.336 5.032 3.915 11.305 hybrid contribution -0.597 0.429 0.543 0.914 sum -9.933 5.461 4.458 12.180 Atomic orbital electron populations 1.21837 0.92246 1.02487 1.03199 1.21247 0.97711 0.93928 1.00279 1.20702 0.90057 0.98102 0.98906 1.22271 1.02755 1.01253 0.94235 1.22059 1.02959 0.99727 0.95006 1.21234 0.90625 0.83458 0.79566 1.90519 1.71538 1.32897 1.53873 1.43152 1.05343 1.03514 1.64676 1.19910 0.82274 1.34025 1.19538 0.91885 1.27478 1.09773 0.93990 0.90663 1.70708 1.11406 1.43389 1.26392 0.82932 0.70111 0.77330 0.75844 1.21150 1.17977 1.21425 1.22644 0.97440 0.83613 1.03388 1.23193 1.00889 0.97297 1.00187 1.23323 1.03937 1.03715 0.90966 0.90582 0.91316 0.92068 0.95036 0.94049 0.89936 0.88447 0.94144 0.94670 0.87843 0.91927 0.93447 0.83080 0.90670 0.86064 0.85197 0.91370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 9.22 71.98 0.66 -2.77 16 2 C -0.09 -3.42 4.27 30.60 0.13 -3.29 16 3 C -0.07 -2.79 0.52 -52.93 -0.03 -2.82 16 4 C -0.15 -4.36 7.72 71.98 0.56 -3.80 16 5 C -0.14 -4.58 7.51 71.98 0.54 -4.03 16 6 C 0.46 24.04 4.97 87.66 0.44 24.48 16 7 O -0.61 -38.34 14.14 -3.06 -0.04 -38.38 16 8 N -0.45 -22.75 2.61 -613.11 -1.60 -24.35 16 9 C -0.43 -24.72 7.67 84.04 0.64 -24.08 16 10 H 0.06 3.57 7.51 -2.91 -0.02 3.55 16 11 C -0.01 -0.83 4.31 84.93 0.37 -0.46 16 12 N -0.89 -56.91 12.57 21.66 0.27 -56.64 16 13 Si 1.12 54.15 29.97 68.60 2.06 56.21 16 14 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 15 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 16 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 17 C 0.03 1.26 3.65 45.00 0.16 1.42 16 18 C -0.18 -6.17 9.82 30.60 0.30 -5.87 16 19 C -0.18 -5.80 9.68 30.60 0.30 -5.50 16 20 H 0.08 1.54 6.43 -2.39 -0.02 1.53 16 21 H 0.07 1.49 6.64 -2.39 -0.02 1.48 16 22 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 23 H 0.03 1.33 8.07 -2.39 -0.02 1.31 16 24 H 0.04 1.64 8.12 -2.39 -0.02 1.62 16 25 H 0.08 2.32 3.89 -2.39 -0.01 2.31 16 26 H 0.10 2.07 6.43 -2.38 -0.02 2.05 16 27 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.03 1.29 8.12 -2.39 -0.02 1.27 16 29 H 0.10 2.39 6.91 -2.39 -0.02 2.37 16 30 H 0.06 2.08 5.03 -2.39 -0.01 2.06 16 31 H 0.26 16.63 7.13 -92.71 -0.66 15.96 16 32 H 0.15 4.84 3.56 -2.39 -0.01 4.84 16 33 H 0.07 3.11 6.89 -2.39 -0.02 3.09 16 34 H 0.12 3.26 8.14 -2.39 -0.02 3.24 16 35 H 0.13 3.02 8.14 -2.39 -0.02 3.00 16 36 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 Total: -1.00 -77.61 275.40 5.93 -71.68 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: 1.17 Total: 18.20 kcal Atomic # 6 Polarization: -30.79 SS G_CDS: 4.07 Total: -26.72 kcal Atomic # 7 Polarization: -79.66 SS G_CDS: -1.33 Total: -80.99 kcal Atomic # 8 Polarization: -38.34 SS G_CDS: -0.04 Total: -38.38 kcal Atomic # 14 Polarization: 54.15 SS G_CDS: 2.06 Total: 56.21 kcal Total: -77.61 5.93 -71.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706783300.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.608 kcal (2) G-P(sol) polarization free energy of solvation -77.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds