Wall clock time and date at job start Mon Mar 30 2020 03:11:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.53006 * 109.46956 * 2 1
4 4 C 1.52997 * 109.46858 * 60.00508 * 3 2 1
5 5 C 1.53001 * 109.47184 * 300.00059 * 3 2 1
6 6 C 1.50700 * 109.46636 * 179.97438 * 3 2 1
7 7 O 1.21289 * 120.00542 * 2.74797 * 6 3 2
8 8 N 1.34780 * 119.99602 * 182.74820 * 6 3 2
9 9 C 1.37104 * 119.99834 * 185.43448 * 8 6 3
10 10 H 1.08001 * 119.99909 * 224.01179 * 9 8 6
11 11 C 1.38945 * 119.99515 * 44.01793 * 9 8 6
12 12 N 1.31408 * 120.00668 * 20.87381 * 11 9 8
13 13 Si 1.86804 * 119.99574 * 200.87787 * 11 9 8
14 14 H 1.48503 * 109.47421 * 180.02562 * 13 11 9
15 15 H 1.48503 * 109.47137 * 300.00042 * 13 11 9
16 16 H 1.48503 * 109.47250 * 59.99843 * 13 11 9
17 17 C 1.46496 * 120.00080 * 5.43421 * 8 6 3
18 18 C 1.53007 * 117.50085 * 188.68530 * 17 8 6
19 19 C 1.53008 * 60.00035 * 252.51266 * 18 17 8
20 20 H 1.09000 * 109.46865 * 299.99739 * 1 2 3
21 21 H 1.09000 * 109.46996 * 60.00010 * 1 2 3
22 22 H 1.08998 * 109.46989 * 179.97438 * 1 2 3
23 23 H 1.09000 * 109.46865 * 240.00261 * 2 1 3
24 24 H 1.09000 * 109.46996 * 119.99989 * 2 1 3
25 25 H 1.08998 * 109.46888 * 179.97438 * 4 3 2
26 26 H 1.09005 * 109.46761 * 299.99196 * 4 3 2
27 27 H 1.09000 * 109.47741 * 59.99614 * 4 3 2
28 28 H 1.09003 * 109.47022 * 308.84443 * 5 3 2
29 29 H 1.08998 * 109.46859 * 68.84674 * 5 3 2
30 30 H 1.09000 * 109.46939 * 188.84394 * 5 3 2
31 31 H 0.97002 * 119.99762 * 2.62911 * 12 11 9
32 32 H 1.08998 * 115.55385 * 334.39556 * 17 8 6
33 33 H 1.08994 * 117.49356 * 0.02562 * 18 17 8
34 34 H 1.08993 * 117.49724 * 145.02418 * 18 17 8
35 35 H 1.09001 * 117.49775 * 252.51076 * 19 18 17
36 36 H 1.08995 * 117.51847 * 107.48031 * 19 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 6 1.5301 2.1637 1.2493
5 6 1.5300 2.1638 -1.2492
6 6 3.5470 1.4425 0.0006
7 8 4.1535 0.3933 -0.0493
8 7 4.2209 2.6084 0.0567
9 6 5.5874 2.6164 -0.0549
10 1 6.1799 3.2275 0.6098
11 6 6.2098 1.8384 -1.0233
12 7 5.5322 1.4277 -2.0717
13 14 8.0098 1.3761 -0.8349
14 1 8.4325 0.5488 -1.9935
15 1 8.8347 2.6097 -0.7810
16 1 8.1936 0.6026 0.4194
17 6 3.4933 3.8670 0.2369
18 6 4.2849 5.1681 0.0897
19 6 3.8257 4.7044 1.4736
20 1 -0.3633 0.5138 0.8900
21 1 -0.3633 0.5138 -0.8900
22 1 -0.3633 -1.0277 -0.0005
23 1 1.8933 -0.5138 -0.8900
24 1 1.8934 -0.5138 0.8900
25 1 1.8938 3.1912 1.2495
26 1 0.4400 2.1637 1.2492
27 1 1.8934 1.6499 2.1393
28 1 1.7586 1.5669 -2.1322
29 1 0.4515 2.3027 -1.1737
30 1 2.0166 3.1357 -1.3317
31 1 4.6084 1.6992 -2.1889
32 1 2.4588 3.8654 -0.1065
33 1 5.3469 5.0874 -0.1417
34 1 3.7713 6.0226 -0.3508
35 1 3.0100 5.2539 1.9435
36 1 4.5855 4.3186 2.1532
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000706783300.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:11:18
Heat of formation + Delta-G solvation = -24.074638 kcal
Electronic energy + Delta-G solvation = -17005.518859 eV
Core-core repulsion = 14490.217177 eV
Total energy + Delta-G solvation = -2515.301683 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 225.147 amu
Computer time = 0.39 seconds
Orbital eigenvalues (eV)
-41.38054 -38.14596 -37.27003 -34.88879 -32.80852 -31.03076 -28.27188 -26.74713
-25.70878 -23.35060 -23.07283 -22.12240 -20.09484 -18.79282 -17.53119 -16.91250
-16.05638 -15.88468 -15.55174 -15.37122 -15.06037 -14.94353 -13.99966 -13.68733
-13.32848 -13.23611 -12.94222 -12.82870 -12.68114 -12.31527 -12.21642 -12.12275
-12.00811 -11.77034 -11.70316 -11.52610 -11.49247 -11.00630 -10.63673 -9.92341
-9.26812 -8.59671 -6.07135 1.44089 1.56818 1.72934 2.12842 2.44832
2.94818 3.07116 3.33377 3.73920 3.85150 3.98330 4.03248 4.16256
4.27954 4.37389 4.47925 4.57301 4.66415 4.76036 4.81530 4.86427
4.93238 5.00679 5.07312 5.12302 5.16771 5.18615 5.29552 5.40813
5.46325 5.55673 5.73803 6.19140 6.86896 7.18604 7.54677 8.17146
8.69964
Molecular weight = 225.15amu
Principal moments of inertia in cm(-1)
A = 0.026068 B = 0.012254 C = 0.009416
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1073.850950 B = 2284.391555 C = 2972.850517
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C -0.093 4.093
3 C -0.074 4.074
4 C -0.148 4.148
5 C -0.141 4.141
6 C 0.461 3.539
7 O -0.605 6.605
8 N -0.447 5.447
9 C -0.430 4.430
10 H 0.063 0.937
11 C -0.014 4.014
12 N -0.886 5.886
13 Si 1.116 2.884
14 H -0.286 1.286
15 H -0.255 1.255
16 H -0.288 1.288
17 C 0.033 3.967
18 C -0.178 4.178
19 C -0.181 4.181
20 H 0.075 0.925
21 H 0.068 0.932
22 H 0.060 0.940
23 H 0.031 0.969
24 H 0.041 0.959
25 H 0.082 0.918
26 H 0.097 0.903
27 H 0.039 0.961
28 H 0.034 0.966
29 H 0.103 0.897
30 H 0.062 0.938
31 H 0.256 0.744
32 H 0.153 0.847
33 H 0.075 0.925
34 H 0.121 0.879
35 H 0.130 0.870
36 H 0.068 0.932
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.874 6.390 4.654 13.444
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.132 4.132
3 C -0.078 4.078
4 C -0.205 4.205
5 C -0.198 4.198
6 C 0.251 3.749
7 O -0.488 6.488
8 N -0.167 5.167
9 C -0.557 4.557
10 H 0.081 0.919
11 C -0.219 4.219
12 N -0.519 5.519
13 Si 0.938 3.062
14 H -0.212 1.212
15 H -0.180 1.180
16 H -0.214 1.214
17 C -0.071 4.071
18 C -0.216 4.216
19 C -0.219 4.219
20 H 0.094 0.906
21 H 0.087 0.913
22 H 0.079 0.921
23 H 0.050 0.950
24 H 0.060 0.940
25 H 0.101 0.899
26 H 0.116 0.884
27 H 0.059 0.941
28 H 0.053 0.947
29 H 0.122 0.878
30 H 0.081 0.919
31 H 0.066 0.934
32 H 0.169 0.831
33 H 0.093 0.907
34 H 0.139 0.861
35 H 0.148 0.852
36 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges -9.336 5.032 3.915 11.305
hybrid contribution -0.597 0.429 0.543 0.914
sum -9.933 5.461 4.458 12.180
Atomic orbital electron populations
1.21837 0.92246 1.02487 1.03199 1.21247 0.97711 0.93928 1.00279
1.20702 0.90057 0.98102 0.98906 1.22271 1.02755 1.01253 0.94235
1.22059 1.02959 0.99727 0.95006 1.21234 0.90625 0.83458 0.79566
1.90519 1.71538 1.32897 1.53873 1.43152 1.05343 1.03514 1.64676
1.19910 0.82274 1.34025 1.19538 0.91885 1.27478 1.09773 0.93990
0.90663 1.70708 1.11406 1.43389 1.26392 0.82932 0.70111 0.77330
0.75844 1.21150 1.17977 1.21425 1.22644 0.97440 0.83613 1.03388
1.23193 1.00889 0.97297 1.00187 1.23323 1.03937 1.03715 0.90966
0.90582 0.91316 0.92068 0.95036 0.94049 0.89936 0.88447 0.94144
0.94670 0.87843 0.91927 0.93447 0.83080 0.90670 0.86064 0.85197
0.91370
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.44 9.22 71.98 0.66 -2.77 16
2 C -0.09 -3.42 4.27 30.60 0.13 -3.29 16
3 C -0.07 -2.79 0.52 -52.93 -0.03 -2.82 16
4 C -0.15 -4.36 7.72 71.98 0.56 -3.80 16
5 C -0.14 -4.58 7.51 71.98 0.54 -4.03 16
6 C 0.46 24.04 4.97 87.66 0.44 24.48 16
7 O -0.61 -38.34 14.14 -3.06 -0.04 -38.38 16
8 N -0.45 -22.75 2.61 -613.11 -1.60 -24.35 16
9 C -0.43 -24.72 7.67 84.04 0.64 -24.08 16
10 H 0.06 3.57 7.51 -2.91 -0.02 3.55 16
11 C -0.01 -0.83 4.31 84.93 0.37 -0.46 16
12 N -0.89 -56.91 12.57 21.66 0.27 -56.64 16
13 Si 1.12 54.15 29.97 68.60 2.06 56.21 16
14 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16
15 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16
16 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16
17 C 0.03 1.26 3.65 45.00 0.16 1.42 16
18 C -0.18 -6.17 9.82 30.60 0.30 -5.87 16
19 C -0.18 -5.80 9.68 30.60 0.30 -5.50 16
20 H 0.08 1.54 6.43 -2.39 -0.02 1.53 16
21 H 0.07 1.49 6.64 -2.39 -0.02 1.48 16
22 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16
23 H 0.03 1.33 8.07 -2.39 -0.02 1.31 16
24 H 0.04 1.64 8.12 -2.39 -0.02 1.62 16
25 H 0.08 2.32 3.89 -2.39 -0.01 2.31 16
26 H 0.10 2.07 6.43 -2.38 -0.02 2.05 16
27 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16
28 H 0.03 1.29 8.12 -2.39 -0.02 1.27 16
29 H 0.10 2.39 6.91 -2.39 -0.02 2.37 16
30 H 0.06 2.08 5.03 -2.39 -0.01 2.06 16
31 H 0.26 16.63 7.13 -92.71 -0.66 15.96 16
32 H 0.15 4.84 3.56 -2.39 -0.01 4.84 16
33 H 0.07 3.11 6.89 -2.39 -0.02 3.09 16
34 H 0.12 3.26 8.14 -2.39 -0.02 3.24 16
35 H 0.13 3.02 8.14 -2.39 -0.02 3.00 16
36 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16
Total: -1.00 -77.61 275.40 5.93 -71.68
By element:
Atomic # 1 Polarization: 17.02 SS G_CDS: 1.17 Total: 18.20 kcal
Atomic # 6 Polarization: -30.79 SS G_CDS: 4.07 Total: -26.72 kcal
Atomic # 7 Polarization: -79.66 SS G_CDS: -1.33 Total: -80.99 kcal
Atomic # 8 Polarization: -38.34 SS G_CDS: -0.04 Total: -38.38 kcal
Atomic # 14 Polarization: 54.15 SS G_CDS: 2.06 Total: 56.21 kcal
Total: -77.61 5.93 -71.68 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000706783300.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 47.608 kcal
(2) G-P(sol) polarization free energy of solvation -77.610 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.001 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.927 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.683 kcal
(6) G-S(sol) free energy of system = (1) + (5) -24.075 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.39 seconds