Wall clock time and date at job start Mon Mar 30 2020 03:46:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.52995 * 109.47118 * 2 1
4 4 C 1.53005 * 109.46913 * 239.99867 * 2 1 3
5 5 H 1.09003 * 109.29378 * 70.19605 * 4 2 1
6 6 C 1.52916 * 109.29920 * 310.61160 * 4 2 1
7 7 H 1.09000 * 109.60711 * 69.01746 * 6 4 2
8 8 C 1.50693 * 109.60719 * 308.68898 * 6 4 2
9 9 H 1.08005 * 120.00108 * 354.65661 * 8 6 4
10 10 C 1.37879 * 120.00614 * 174.65547 * 8 6 4
11 11 N 1.31518 * 119.99503 * 0.02562 * 10 8 6
12 12 Si 1.86798 * 120.00297 * 180.02562 * 10 8 6
13 13 H 1.48503 * 109.47139 * 90.00233 * 12 10 8
14 14 H 1.48498 * 109.47022 * 210.00214 * 12 10 8
15 15 H 1.48502 * 109.47291 * 329.99836 * 12 10 8
16 16 C 1.53349 * 108.67113 * 188.93548 * 6 4 2
17 17 C 1.53064 * 108.42677 * 67.53208 * 16 6 4
18 18 C 1.50178 * 109.89053 * 311.09640 * 17 16 6
19 19 O 1.21275 * 118.24858 * 197.55937 * 18 17 16
20 20 N 1.33363 * 123.50596 * 17.58453 * 18 17 16
21 21 C 1.46496 * 117.94450 * 177.77508 * 20 18 17
22 22 H 1.08996 * 109.47711 * 185.23666 * 1 2 3
23 23 H 1.09001 * 109.47026 * 305.24119 * 1 2 3
24 24 H 1.09010 * 109.47212 * 65.23888 * 1 2 3
25 25 H 1.08993 * 109.46944 * 120.00154 * 2 1 3
26 26 H 1.08997 * 109.47434 * 39.13629 * 3 2 1
27 27 H 1.08996 * 109.46724 * 159.14056 * 3 2 1
28 28 H 1.09003 * 109.47085 * 279.13282 * 3 2 1
29 29 H 0.96998 * 119.99775 * 180.02562 * 11 10 8
30 30 H 1.09005 * 109.67279 * 187.26535 * 16 6 4
31 31 H 1.09001 * 109.67512 * 307.79373 * 16 6 4
32 32 H 1.09001 * 109.40129 * 71.22848 * 17 16 6
33 33 H 1.09000 * 109.40337 * 191.05905 * 17 16 6
34 34 H 1.09001 * 109.46818 * 267.38158 * 21 20 18
35 35 H 1.08999 * 109.47305 * 27.38109 * 21 20 18
36 36 H 1.08994 * 109.46802 * 147.38349 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7213 -1.2493
5 1 1.8314 -0.1109 -2.1280
6 6 1.3227 -2.0649 -1.3853
7 1 0.2747 -1.8967 -1.6333
8 6 1.4194 -2.8235 -0.0868
9 1 2.0133 -2.4305 0.7253
10 6 0.7499 -4.0193 0.0648
11 7 0.0272 -4.4981 -0.9242
12 14 0.8693 -4.9591 1.6747
13 1 -0.2181 -4.5203 2.5859
14 1 0.7358 -6.4141 1.4094
15 1 2.1851 -4.6903 2.3085
16 6 1.9965 -2.8702 -2.5029
17 6 3.4072 -3.2476 -2.0443
18 6 4.1113 -2.0349 -1.5069
19 8 5.3191 -2.0712 -1.4036
20 7 3.4794 -0.9204 -1.1367
21 6 4.2824 0.1722 -0.5821
22 1 -0.3634 -1.0233 0.0938
23 1 -0.3633 0.5930 0.8393
24 1 -0.3634 0.4305 -0.9333
25 1 1.8933 -0.5138 0.8899
26 1 1.4096 2.0507 0.6486
27 1 3.0664 1.4648 0.3659
28 1 2.0073 1.8394 -1.0147
29 1 -0.4442 -5.3391 -0.8175
30 1 1.4211 -3.7744 -2.7018
31 1 2.0543 -2.2651 -3.4076
32 1 3.3435 -4.0053 -1.2633
33 1 3.9684 -3.6455 -2.8898
34 1 4.3156 0.0836 0.5038
35 1 5.2949 0.1183 -0.9822
36 1 3.8341 1.1274 -0.8552
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000709971105.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:46:07
Heat of formation + Delta-G solvation = -35.670499 kcal
Electronic energy + Delta-G solvation = -17118.027143 eV
Core-core repulsion = 14602.222626 eV
Total energy + Delta-G solvation = -2515.804517 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 225.147 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-39.97135 -36.94369 -34.39048 -32.93377 -31.62392 -28.63997 -27.05009 -25.86463
-24.78424 -23.10514 -20.77885 -19.76764 -17.94634 -16.11736 -15.59789 -15.47293
-14.73989 -14.57920 -13.98360 -13.58378 -13.25375 -12.75815 -12.54932 -12.27524
-11.88385 -11.75405 -11.63993 -11.47276 -11.03303 -10.84112 -10.74414 -10.63615
-10.16273 -10.08850 -10.01396 -9.58724 -9.42673 -8.94611 -8.58166 -8.44604
-7.86722 -6.09815 -4.12609 3.25554 3.34034 3.38424 3.55210 3.91092
4.37588 5.23551 5.36532 5.46149 5.53172 5.65595 5.89491 5.94487
6.04246 6.11547 6.13197 6.23375 6.25948 6.31638 6.36614 6.39376
6.43607 6.63804 6.72860 7.00307 7.07259 7.13081 7.15589 7.32711
7.53468 7.63431 7.90174 8.28478 8.36216 8.88882 9.05501 9.51360
10.98006
Molecular weight = 225.15amu
Principal moments of inertia in cm(-1)
A = 0.023113 B = 0.013311 C = 0.010733
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1211.142324 B = 2103.079294 C = 2608.243703
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C -0.091 4.091
3 C -0.170 4.170
4 C 0.155 3.845
5 H 0.046 0.954
6 C 0.037 3.963
7 H 0.054 0.946
8 C -0.504 4.504
9 H 0.057 0.943
10 C 0.067 3.933
11 N -0.887 5.887
12 Si 0.882 3.118
13 H -0.281 1.281
14 H -0.287 1.287
15 H -0.275 1.275
16 C -0.112 4.112
17 C -0.112 4.112
18 C 0.531 3.469
19 O -0.592 6.592
20 N -0.588 5.588
21 C 0.062 3.938
22 H 0.085 0.915
23 H 0.039 0.961
24 H 0.041 0.959
25 H 0.080 0.920
26 H 0.046 0.954
27 H 0.068 0.932
28 H 0.049 0.951
29 H 0.261 0.739
30 H 0.089 0.911
31 H 0.024 0.976
32 H 0.103 0.897
33 H 0.068 0.932
34 H 0.047 0.953
35 H 0.066 0.934
36 H 0.080 0.920
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.777 7.770 -0.389 7.819
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.111 4.111
3 C -0.227 4.227
4 C 0.052 3.948
5 H 0.064 0.936
6 C 0.018 3.982
7 H 0.072 0.928
8 C -0.542 4.542
9 H 0.075 0.925
10 C -0.135 4.135
11 N -0.526 5.526
12 Si 0.710 3.290
13 H -0.207 1.207
14 H -0.213 1.213
15 H -0.200 1.200
16 C -0.151 4.151
17 C -0.152 4.152
18 C 0.322 3.678
19 O -0.474 6.474
20 N -0.319 5.319
21 C -0.081 4.081
22 H 0.104 0.896
23 H 0.058 0.942
24 H 0.061 0.939
25 H 0.099 0.901
26 H 0.065 0.935
27 H 0.086 0.914
28 H 0.068 0.932
29 H 0.071 0.929
30 H 0.107 0.893
31 H 0.043 0.957
32 H 0.121 0.879
33 H 0.087 0.913
34 H 0.066 0.934
35 H 0.085 0.915
36 H 0.098 0.902
Dipole moment (debyes) X Y Z Total
from point charges 1.250 7.581 -0.400 7.694
hybrid contribution -0.071 -0.595 0.978 1.147
sum 1.179 6.986 0.578 7.109
Atomic orbital electron populations
1.21806 0.94491 1.03723 0.99637 1.21254 0.96550 0.93869 0.99379
1.22616 1.01643 0.97392 1.01017 1.21308 0.78489 0.99471 0.95509
0.93560 1.19136 0.95418 0.88575 0.95055 0.92821 1.20992 1.29621
1.05222 0.98349 0.92459 1.24891 0.95194 0.97360 0.96094 1.69896
1.31167 1.20489 1.31007 0.86732 0.78525 0.79320 0.84373 1.20687
1.21264 1.19971 1.21662 0.94339 1.02279 0.96781 1.21402 0.97025
0.95442 1.01299 1.20381 0.86989 0.84251 0.76212 1.90573 1.15513
1.83148 1.58179 1.47183 1.08134 1.14785 1.61825 1.22211 0.96903
0.90830 0.98155 0.89639 0.94187 0.93946 0.90133 0.93477 0.91358
0.93192 0.92922 0.89262 0.95691 0.87884 0.91350 0.93412 0.91505
0.90206
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.32 8.26 37.16 0.31 -2.02 16
2 C -0.09 -1.57 1.84 -90.62 -0.17 -1.73 16
3 C -0.17 -2.34 7.67 37.16 0.29 -2.06 16
4 C 0.16 2.95 2.21 -68.38 -0.15 2.80 16
5 H 0.05 0.84 7.89 -51.93 -0.41 0.43 16
6 C 0.04 0.80 1.50 -91.64 -0.14 0.67 16
7 H 0.05 1.26 7.01 -51.93 -0.36 0.89 16
8 C -0.50 -12.19 4.96 -34.44 -0.17 -12.36 16
9 H 0.06 1.45 6.41 -52.48 -0.34 1.11 16
10 C 0.07 1.68 5.34 -17.82 -0.10 1.59 16
11 N -0.89 -23.21 11.88 55.43 0.66 -22.55 16
12 Si 0.88 20.35 29.54 -169.99 -5.02 15.33 16
13 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16
14 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16
15 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16
16 C -0.11 -2.43 5.42 -26.52 -0.14 -2.57 16
17 C -0.11 -2.43 5.50 -28.10 -0.15 -2.58 16
18 C 0.53 11.85 7.20 -11.87 -0.09 11.77 16
19 O -0.59 -14.51 16.14 5.56 0.09 -14.42 16
20 N -0.59 -11.68 3.01 -175.18 -0.53 -12.21 16
21 C 0.06 1.04 8.10 59.84 0.48 1.52 16
22 H 0.08 1.68 6.08 -51.93 -0.32 1.37 16
23 H 0.04 0.59 8.02 -51.93 -0.42 0.18 16
24 H 0.04 0.65 8.14 -51.92 -0.42 0.23 16
25 H 0.08 1.55 6.69 -51.93 -0.35 1.21 16
26 H 0.05 0.59 7.89 -51.93 -0.41 0.18 16
27 H 0.07 0.89 4.69 -51.93 -0.24 0.65 16
28 H 0.05 0.65 7.53 -51.93 -0.39 0.26 16
29 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16
30 H 0.09 2.11 6.79 -51.93 -0.35 1.75 16
31 H 0.02 0.49 8.13 -51.93 -0.42 0.07 16
32 H 0.10 2.41 7.43 -51.93 -0.39 2.02 16
33 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16
34 H 0.05 0.79 7.60 -51.93 -0.39 0.39 16
35 H 0.07 1.17 7.05 -51.93 -0.37 0.80 16
36 H 0.08 1.12 4.82 -51.93 -0.25 0.87 16
LS Contribution 268.52 15.07 4.05 4.05
Total: -1.00 -27.33 268.52 -6.17 -33.50
By element:
Atomic # 1 Polarization: 6.66 SS G_CDS: -5.39 Total: 1.28 kcal
Atomic # 6 Polarization: -4.95 SS G_CDS: -0.03 Total: -4.98 kcal
Atomic # 7 Polarization: -34.89 SS G_CDS: 0.13 Total: -34.76 kcal
Atomic # 8 Polarization: -14.51 SS G_CDS: 0.09 Total: -14.42 kcal
Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal
Total LS contribution 4.05 Total: 4.05 kcal
Total: -27.33 -6.17 -33.50 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000709971105.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -2.171 kcal
(2) G-P(sol) polarization free energy of solvation -27.333 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.504 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.167 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.499 kcal
(6) G-S(sol) free energy of system = (1) + (5) -35.670 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds