Wall clock time and date at job start Mon Mar 30 2020 03:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47118 * 2 1 4 4 C 1.53005 * 109.46913 * 239.99867 * 2 1 3 5 5 H 1.09003 * 109.29378 * 70.19605 * 4 2 1 6 6 C 1.52916 * 109.29920 * 310.61160 * 4 2 1 7 7 H 1.09000 * 109.60711 * 69.01746 * 6 4 2 8 8 C 1.50693 * 109.60719 * 308.68898 * 6 4 2 9 9 H 1.08005 * 120.00108 * 354.65661 * 8 6 4 10 10 C 1.37879 * 120.00614 * 174.65547 * 8 6 4 11 11 N 1.31518 * 119.99503 * 0.02562 * 10 8 6 12 12 Si 1.86798 * 120.00297 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47139 * 90.00233 * 12 10 8 14 14 H 1.48498 * 109.47022 * 210.00214 * 12 10 8 15 15 H 1.48502 * 109.47291 * 329.99836 * 12 10 8 16 16 C 1.53349 * 108.67113 * 188.93548 * 6 4 2 17 17 C 1.53064 * 108.42677 * 67.53208 * 16 6 4 18 18 C 1.50178 * 109.89053 * 311.09640 * 17 16 6 19 19 O 1.21275 * 118.24858 * 197.55937 * 18 17 16 20 20 N 1.33363 * 123.50596 * 17.58453 * 18 17 16 21 21 C 1.46496 * 117.94450 * 177.77508 * 20 18 17 22 22 H 1.08996 * 109.47711 * 185.23666 * 1 2 3 23 23 H 1.09001 * 109.47026 * 305.24119 * 1 2 3 24 24 H 1.09010 * 109.47212 * 65.23888 * 1 2 3 25 25 H 1.08993 * 109.46944 * 120.00154 * 2 1 3 26 26 H 1.08997 * 109.47434 * 39.13629 * 3 2 1 27 27 H 1.08996 * 109.46724 * 159.14056 * 3 2 1 28 28 H 1.09003 * 109.47085 * 279.13282 * 3 2 1 29 29 H 0.96998 * 119.99775 * 180.02562 * 11 10 8 30 30 H 1.09005 * 109.67279 * 187.26535 * 16 6 4 31 31 H 1.09001 * 109.67512 * 307.79373 * 16 6 4 32 32 H 1.09001 * 109.40129 * 71.22848 * 17 16 6 33 33 H 1.09000 * 109.40337 * 191.05905 * 17 16 6 34 34 H 1.09001 * 109.46818 * 267.38158 * 21 20 18 35 35 H 1.08999 * 109.47305 * 27.38109 * 21 20 18 36 36 H 1.08994 * 109.46802 * 147.38349 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 1 1.8314 -0.1109 -2.1280 6 6 1.3227 -2.0649 -1.3853 7 1 0.2747 -1.8967 -1.6333 8 6 1.4194 -2.8235 -0.0868 9 1 2.0133 -2.4305 0.7253 10 6 0.7499 -4.0193 0.0648 11 7 0.0272 -4.4981 -0.9242 12 14 0.8693 -4.9591 1.6747 13 1 -0.2181 -4.5203 2.5859 14 1 0.7358 -6.4141 1.4094 15 1 2.1851 -4.6903 2.3085 16 6 1.9965 -2.8702 -2.5029 17 6 3.4072 -3.2476 -2.0443 18 6 4.1113 -2.0349 -1.5069 19 8 5.3191 -2.0712 -1.4036 20 7 3.4794 -0.9204 -1.1367 21 6 4.2824 0.1722 -0.5821 22 1 -0.3634 -1.0233 0.0938 23 1 -0.3633 0.5930 0.8393 24 1 -0.3634 0.4305 -0.9333 25 1 1.8933 -0.5138 0.8899 26 1 1.4096 2.0507 0.6486 27 1 3.0664 1.4648 0.3659 28 1 2.0073 1.8394 -1.0147 29 1 -0.4442 -5.3391 -0.8175 30 1 1.4211 -3.7744 -2.7018 31 1 2.0543 -2.2651 -3.4076 32 1 3.3435 -4.0053 -1.2633 33 1 3.9684 -3.6455 -2.8898 34 1 4.3156 0.0836 0.5038 35 1 5.2949 0.1183 -0.9822 36 1 3.8341 1.1274 -0.8552 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709971105.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:07 Heat of formation + Delta-G solvation = -35.670499 kcal Electronic energy + Delta-G solvation = -17118.027143 eV Core-core repulsion = 14602.222626 eV Total energy + Delta-G solvation = -2515.804517 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.97135 -36.94369 -34.39048 -32.93377 -31.62392 -28.63997 -27.05009 -25.86463 -24.78424 -23.10514 -20.77885 -19.76764 -17.94634 -16.11736 -15.59789 -15.47293 -14.73989 -14.57920 -13.98360 -13.58378 -13.25375 -12.75815 -12.54932 -12.27524 -11.88385 -11.75405 -11.63993 -11.47276 -11.03303 -10.84112 -10.74414 -10.63615 -10.16273 -10.08850 -10.01396 -9.58724 -9.42673 -8.94611 -8.58166 -8.44604 -7.86722 -6.09815 -4.12609 3.25554 3.34034 3.38424 3.55210 3.91092 4.37588 5.23551 5.36532 5.46149 5.53172 5.65595 5.89491 5.94487 6.04246 6.11547 6.13197 6.23375 6.25948 6.31638 6.36614 6.39376 6.43607 6.63804 6.72860 7.00307 7.07259 7.13081 7.15589 7.32711 7.53468 7.63431 7.90174 8.28478 8.36216 8.88882 9.05501 9.51360 10.98006 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.023113 B = 0.013311 C = 0.010733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.142324 B = 2103.079294 C = 2608.243703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.091 4.091 3 C -0.170 4.170 4 C 0.155 3.845 5 H 0.046 0.954 6 C 0.037 3.963 7 H 0.054 0.946 8 C -0.504 4.504 9 H 0.057 0.943 10 C 0.067 3.933 11 N -0.887 5.887 12 Si 0.882 3.118 13 H -0.281 1.281 14 H -0.287 1.287 15 H -0.275 1.275 16 C -0.112 4.112 17 C -0.112 4.112 18 C 0.531 3.469 19 O -0.592 6.592 20 N -0.588 5.588 21 C 0.062 3.938 22 H 0.085 0.915 23 H 0.039 0.961 24 H 0.041 0.959 25 H 0.080 0.920 26 H 0.046 0.954 27 H 0.068 0.932 28 H 0.049 0.951 29 H 0.261 0.739 30 H 0.089 0.911 31 H 0.024 0.976 32 H 0.103 0.897 33 H 0.068 0.932 34 H 0.047 0.953 35 H 0.066 0.934 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.777 7.770 -0.389 7.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.111 4.111 3 C -0.227 4.227 4 C 0.052 3.948 5 H 0.064 0.936 6 C 0.018 3.982 7 H 0.072 0.928 8 C -0.542 4.542 9 H 0.075 0.925 10 C -0.135 4.135 11 N -0.526 5.526 12 Si 0.710 3.290 13 H -0.207 1.207 14 H -0.213 1.213 15 H -0.200 1.200 16 C -0.151 4.151 17 C -0.152 4.152 18 C 0.322 3.678 19 O -0.474 6.474 20 N -0.319 5.319 21 C -0.081 4.081 22 H 0.104 0.896 23 H 0.058 0.942 24 H 0.061 0.939 25 H 0.099 0.901 26 H 0.065 0.935 27 H 0.086 0.914 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.107 0.893 31 H 0.043 0.957 32 H 0.121 0.879 33 H 0.087 0.913 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.250 7.581 -0.400 7.694 hybrid contribution -0.071 -0.595 0.978 1.147 sum 1.179 6.986 0.578 7.109 Atomic orbital electron populations 1.21806 0.94491 1.03723 0.99637 1.21254 0.96550 0.93869 0.99379 1.22616 1.01643 0.97392 1.01017 1.21308 0.78489 0.99471 0.95509 0.93560 1.19136 0.95418 0.88575 0.95055 0.92821 1.20992 1.29621 1.05222 0.98349 0.92459 1.24891 0.95194 0.97360 0.96094 1.69896 1.31167 1.20489 1.31007 0.86732 0.78525 0.79320 0.84373 1.20687 1.21264 1.19971 1.21662 0.94339 1.02279 0.96781 1.21402 0.97025 0.95442 1.01299 1.20381 0.86989 0.84251 0.76212 1.90573 1.15513 1.83148 1.58179 1.47183 1.08134 1.14785 1.61825 1.22211 0.96903 0.90830 0.98155 0.89639 0.94187 0.93946 0.90133 0.93477 0.91358 0.93192 0.92922 0.89262 0.95691 0.87884 0.91350 0.93412 0.91505 0.90206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 8.26 37.16 0.31 -2.02 16 2 C -0.09 -1.57 1.84 -90.62 -0.17 -1.73 16 3 C -0.17 -2.34 7.67 37.16 0.29 -2.06 16 4 C 0.16 2.95 2.21 -68.38 -0.15 2.80 16 5 H 0.05 0.84 7.89 -51.93 -0.41 0.43 16 6 C 0.04 0.80 1.50 -91.64 -0.14 0.67 16 7 H 0.05 1.26 7.01 -51.93 -0.36 0.89 16 8 C -0.50 -12.19 4.96 -34.44 -0.17 -12.36 16 9 H 0.06 1.45 6.41 -52.48 -0.34 1.11 16 10 C 0.07 1.68 5.34 -17.82 -0.10 1.59 16 11 N -0.89 -23.21 11.88 55.43 0.66 -22.55 16 12 Si 0.88 20.35 29.54 -169.99 -5.02 15.33 16 13 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 14 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 16 C -0.11 -2.43 5.42 -26.52 -0.14 -2.57 16 17 C -0.11 -2.43 5.50 -28.10 -0.15 -2.58 16 18 C 0.53 11.85 7.20 -11.87 -0.09 11.77 16 19 O -0.59 -14.51 16.14 5.56 0.09 -14.42 16 20 N -0.59 -11.68 3.01 -175.18 -0.53 -12.21 16 21 C 0.06 1.04 8.10 59.84 0.48 1.52 16 22 H 0.08 1.68 6.08 -51.93 -0.32 1.37 16 23 H 0.04 0.59 8.02 -51.93 -0.42 0.18 16 24 H 0.04 0.65 8.14 -51.92 -0.42 0.23 16 25 H 0.08 1.55 6.69 -51.93 -0.35 1.21 16 26 H 0.05 0.59 7.89 -51.93 -0.41 0.18 16 27 H 0.07 0.89 4.69 -51.93 -0.24 0.65 16 28 H 0.05 0.65 7.53 -51.93 -0.39 0.26 16 29 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 30 H 0.09 2.11 6.79 -51.93 -0.35 1.75 16 31 H 0.02 0.49 8.13 -51.93 -0.42 0.07 16 32 H 0.10 2.41 7.43 -51.93 -0.39 2.02 16 33 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.05 0.79 7.60 -51.93 -0.39 0.39 16 35 H 0.07 1.17 7.05 -51.93 -0.37 0.80 16 36 H 0.08 1.12 4.82 -51.93 -0.25 0.87 16 LS Contribution 268.52 15.07 4.05 4.05 Total: -1.00 -27.33 268.52 -6.17 -33.50 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -5.39 Total: 1.28 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -0.03 Total: -4.98 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: 0.13 Total: -34.76 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: 0.09 Total: -14.42 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -27.33 -6.17 -33.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709971105.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.171 kcal (2) G-P(sol) polarization free energy of solvation -27.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds