Wall clock time and date at job start Mon Mar 30 2020 03:46:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.52995 * 109.47118 * 2 1
4 4 C 1.53005 * 109.46913 * 239.99867 * 2 1 3
5 5 H 1.09003 * 109.29378 * 70.19605 * 4 2 1
6 6 C 1.52916 * 109.29920 * 310.61160 * 4 2 1
7 7 H 1.09000 * 109.60711 * 69.01746 * 6 4 2
8 8 C 1.50693 * 109.60719 * 308.68898 * 6 4 2
9 9 H 1.08005 * 120.00108 * 354.65661 * 8 6 4
10 10 C 1.37879 * 120.00614 * 174.65547 * 8 6 4
11 11 N 1.31518 * 119.99503 * 0.02562 * 10 8 6
12 12 Si 1.86798 * 120.00297 * 180.02562 * 10 8 6
13 13 H 1.48503 * 109.47139 * 90.00233 * 12 10 8
14 14 H 1.48498 * 109.47022 * 210.00214 * 12 10 8
15 15 H 1.48502 * 109.47291 * 329.99836 * 12 10 8
16 16 C 1.53349 * 108.67113 * 188.93548 * 6 4 2
17 17 C 1.53064 * 108.42677 * 67.53208 * 16 6 4
18 18 C 1.50178 * 109.89053 * 311.09640 * 17 16 6
19 19 O 1.21275 * 118.24858 * 197.55937 * 18 17 16
20 20 N 1.33363 * 123.50596 * 17.58453 * 18 17 16
21 21 C 1.46496 * 117.94450 * 177.77508 * 20 18 17
22 22 H 1.08996 * 109.47711 * 185.23666 * 1 2 3
23 23 H 1.09001 * 109.47026 * 305.24119 * 1 2 3
24 24 H 1.09010 * 109.47212 * 65.23888 * 1 2 3
25 25 H 1.08993 * 109.46944 * 120.00154 * 2 1 3
26 26 H 1.08997 * 109.47434 * 39.13629 * 3 2 1
27 27 H 1.08996 * 109.46724 * 159.14056 * 3 2 1
28 28 H 1.09003 * 109.47085 * 279.13282 * 3 2 1
29 29 H 0.96998 * 119.99775 * 180.02562 * 11 10 8
30 30 H 1.09005 * 109.67279 * 187.26535 * 16 6 4
31 31 H 1.09001 * 109.67512 * 307.79373 * 16 6 4
32 32 H 1.09001 * 109.40129 * 71.22848 * 17 16 6
33 33 H 1.09000 * 109.40337 * 191.05905 * 17 16 6
34 34 H 1.09001 * 109.46818 * 267.38158 * 21 20 18
35 35 H 1.08999 * 109.47305 * 27.38109 * 21 20 18
36 36 H 1.08994 * 109.46802 * 147.38349 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7213 -1.2493
5 1 1.8314 -0.1109 -2.1280
6 6 1.3227 -2.0649 -1.3853
7 1 0.2747 -1.8967 -1.6333
8 6 1.4194 -2.8235 -0.0868
9 1 2.0133 -2.4305 0.7253
10 6 0.7499 -4.0193 0.0648
11 7 0.0272 -4.4981 -0.9242
12 14 0.8693 -4.9591 1.6747
13 1 -0.2181 -4.5203 2.5859
14 1 0.7358 -6.4141 1.4094
15 1 2.1851 -4.6903 2.3085
16 6 1.9965 -2.8702 -2.5029
17 6 3.4072 -3.2476 -2.0443
18 6 4.1113 -2.0349 -1.5069
19 8 5.3191 -2.0712 -1.4036
20 7 3.4794 -0.9204 -1.1367
21 6 4.2824 0.1722 -0.5821
22 1 -0.3634 -1.0233 0.0938
23 1 -0.3633 0.5930 0.8393
24 1 -0.3634 0.4305 -0.9333
25 1 1.8933 -0.5138 0.8899
26 1 1.4096 2.0507 0.6486
27 1 3.0664 1.4648 0.3659
28 1 2.0073 1.8394 -1.0147
29 1 -0.4442 -5.3391 -0.8175
30 1 1.4211 -3.7744 -2.7018
31 1 2.0543 -2.2651 -3.4076
32 1 3.3435 -4.0053 -1.2633
33 1 3.9684 -3.6455 -2.8898
34 1 4.3156 0.0836 0.5038
35 1 5.2949 0.1183 -0.9822
36 1 3.8341 1.1274 -0.8552
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000709971105.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:46:07
Heat of formation + Delta-G solvation = -51.238853 kcal
Electronic energy + Delta-G solvation = -17118.702238 eV
Core-core repulsion = 14602.222626 eV
Total energy + Delta-G solvation = -2516.479612 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 225.147 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-41.61851 -38.60067 -36.06881 -34.48738 -33.47462 -30.20299 -28.56954 -27.34417
-26.54421 -24.65659 -22.50820 -21.19877 -19.70028 -17.76495 -17.28224 -17.26655
-16.48929 -16.32794 -15.50007 -15.02321 -14.89222 -14.42003 -14.07219 -13.86066
-13.50897 -13.34468 -12.91443 -12.85672 -12.79606 -12.61710 -12.53368 -12.25465
-11.90140 -11.65496 -11.44853 -11.20161 -11.00701 -10.74835 -10.41737 -10.27898
-9.45970 -8.05919 -6.10361 1.38359 1.44032 1.49627 1.79990 2.34586
2.45727 3.27007 3.89055 4.01848 4.15391 4.34132 4.41622 4.48358
4.57126 4.60736 4.72811 4.76462 4.88905 4.94765 4.99243 5.01558
5.16210 5.20143 5.33418 5.35539 5.40324 5.60599 5.65228 5.75996
5.76859 5.83763 6.02545 6.39670 6.69492 6.94931 7.34490 7.54373
9.01099
Molecular weight = 225.15amu
Principal moments of inertia in cm(-1)
A = 0.023113 B = 0.013311 C = 0.010733
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1211.142324 B = 2103.079294 C = 2608.243703
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C -0.088 4.088
3 C -0.164 4.164
4 C 0.156 3.844
5 H 0.068 0.932
6 C 0.035 3.965
7 H 0.039 0.961
8 C -0.493 4.493
9 H 0.044 0.956
10 C 0.028 3.972
11 N -0.910 5.910
12 Si 0.925 3.075
13 H -0.277 1.277
14 H -0.289 1.289
15 H -0.282 1.282
16 C -0.106 4.106
17 C -0.109 4.109
18 C 0.523 3.477
19 O -0.619 6.619
20 N -0.586 5.586
21 C 0.059 3.941
22 H 0.048 0.952
23 H 0.059 0.941
24 H 0.056 0.944
25 H 0.054 0.946
26 H 0.063 0.937
27 H 0.076 0.924
28 H 0.064 0.936
29 H 0.259 0.741
30 H 0.066 0.934
31 H 0.045 0.955
32 H 0.080 0.920
33 H 0.084 0.916
34 H 0.051 0.949
35 H 0.058 0.942
36 H 0.115 0.885
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.822 9.792 -0.340 9.833
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C -0.108 4.108
3 C -0.220 4.220
4 C 0.053 3.947
5 H 0.086 0.914
6 C 0.016 3.984
7 H 0.057 0.943
8 C -0.531 4.531
9 H 0.063 0.937
10 C -0.171 4.171
11 N -0.549 5.549
12 Si 0.753 3.247
13 H -0.202 1.202
14 H -0.215 1.215
15 H -0.207 1.207
16 C -0.144 4.144
17 C -0.148 4.148
18 C 0.313 3.687
19 O -0.504 6.504
20 N -0.315 5.315
21 C -0.082 4.082
22 H 0.067 0.933
23 H 0.078 0.922
24 H 0.075 0.925
25 H 0.073 0.927
26 H 0.082 0.918
27 H 0.095 0.905
28 H 0.083 0.917
29 H 0.068 0.932
30 H 0.084 0.916
31 H 0.064 0.936
32 H 0.098 0.902
33 H 0.102 0.898
34 H 0.069 0.931
35 H 0.077 0.923
36 H 0.133 0.867
Dipole moment (debyes) X Y Z Total
from point charges 1.277 9.628 -0.335 9.718
hybrid contribution -0.103 -1.195 0.973 1.545
sum 1.174 8.432 0.638 8.538
Atomic orbital electron populations
1.21718 0.94229 1.01887 1.01257 1.21194 0.96691 0.95830 0.97043
1.22528 1.02291 0.94738 1.02485 1.21342 0.77713 0.98119 0.97530
0.91401 1.19068 0.95130 0.90195 0.93959 0.94290 1.21078 1.28221
1.04946 0.98878 0.93749 1.25359 0.95573 0.98297 0.97857 1.69973
1.32194 1.20745 1.32024 0.86063 0.77988 0.78334 0.82274 1.20249
1.21497 1.20729 1.21550 0.93817 1.01556 0.97521 1.21327 0.97316
0.95038 1.01156 1.20432 0.86717 0.85006 0.76530 1.90554 1.16491
1.83749 1.59590 1.47272 1.08711 1.14844 1.60717 1.22453 0.96397
0.91202 0.98189 0.93293 0.92231 0.92531 0.92713 0.91789 0.90523
0.91691 0.93209 0.91569 0.93628 0.90197 0.89789 0.93070 0.92291
0.86678
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -4.18 8.26 71.98 0.59 -3.59 16
2 C -0.09 -2.81 1.84 -10.79 -0.02 -2.83 16
3 C -0.16 -3.81 7.67 71.98 0.55 -3.25 16
4 C 0.16 5.58 2.21 45.11 0.10 5.67 16
5 H 0.07 2.20 7.89 -2.39 -0.02 2.18 16
6 C 0.04 1.52 1.50 -11.45 -0.02 1.50 16
7 H 0.04 1.82 7.01 -2.39 -0.02 1.80 16
8 C -0.49 -24.00 4.96 25.60 0.13 -23.87 16
9 H 0.04 2.26 6.41 -2.91 -0.02 2.24 16
10 C 0.03 1.45 5.34 84.65 0.45 1.90 16
11 N -0.91 -48.29 11.88 21.45 0.25 -48.03 16
12 Si 0.93 42.21 29.54 68.60 2.03 44.24 16
13 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16
14 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16
15 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16
16 C -0.11 -4.55 5.42 30.73 0.17 -4.38 16
17 C -0.11 -4.69 5.50 29.71 0.16 -4.53 16
18 C 0.52 22.90 7.20 87.71 0.63 23.53 16
19 O -0.62 -29.98 16.14 -3.01 -0.05 -30.03 16
20 N -0.59 -22.17 3.01 -827.32 -2.49 -24.67 16
21 C 0.06 1.83 8.10 127.77 1.04 2.87 16
22 H 0.05 1.90 6.08 -2.39 -0.01 1.88 16
23 H 0.06 1.61 8.02 -2.39 -0.02 1.59 16
24 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16
25 H 0.05 2.03 6.69 -2.39 -0.02 2.02 16
26 H 0.06 1.31 7.89 -2.39 -0.02 1.29 16
27 H 0.08 1.67 4.69 -2.39 -0.01 1.66 16
28 H 0.06 1.35 7.53 -2.39 -0.02 1.34 16
29 H 0.26 13.39 8.31 -92.71 -0.77 12.62 16
30 H 0.07 3.15 6.79 -2.38 -0.02 3.13 16
31 H 0.05 1.74 8.13 -2.39 -0.02 1.72 16
32 H 0.08 3.81 7.43 -2.39 -0.02 3.79 16
33 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16
34 H 0.05 1.56 7.60 -2.39 -0.02 1.54 16
35 H 0.06 1.94 7.05 -2.39 -0.02 1.92 16
36 H 0.12 2.73 4.82 -2.39 -0.01 2.72 16
Total: -1.00 -58.27 268.52 4.59 -53.69
By element:
Atomic # 1 Polarization: 10.72 SS G_CDS: 1.06 Total: 11.78 kcal
Atomic # 6 Polarization: -10.76 SS G_CDS: 3.79 Total: -6.98 kcal
Atomic # 7 Polarization: -70.46 SS G_CDS: -2.24 Total: -72.70 kcal
Atomic # 8 Polarization: -29.98 SS G_CDS: -0.05 Total: -30.03 kcal
Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal
Total: -58.27 4.59 -53.69 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000709971105.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 2.446 kcal
(2) G-P(sol) polarization free energy of solvation -58.272 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.825 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.587 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.685 kcal
(6) G-S(sol) free energy of system = (1) + (5) -51.239 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.39 seconds