Wall clock time and date at job start Mon Mar 30 2020 03:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47118 * 2 1 4 4 C 1.53005 * 109.46913 * 239.99867 * 2 1 3 5 5 H 1.09003 * 109.29378 * 70.19605 * 4 2 1 6 6 C 1.52916 * 109.29920 * 310.61160 * 4 2 1 7 7 H 1.09000 * 109.60711 * 69.01746 * 6 4 2 8 8 C 1.50693 * 109.60719 * 308.68898 * 6 4 2 9 9 H 1.08005 * 120.00108 * 354.65661 * 8 6 4 10 10 C 1.37879 * 120.00614 * 174.65547 * 8 6 4 11 11 N 1.31518 * 119.99503 * 0.02562 * 10 8 6 12 12 Si 1.86798 * 120.00297 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47139 * 90.00233 * 12 10 8 14 14 H 1.48498 * 109.47022 * 210.00214 * 12 10 8 15 15 H 1.48502 * 109.47291 * 329.99836 * 12 10 8 16 16 C 1.53349 * 108.67113 * 188.93548 * 6 4 2 17 17 C 1.53064 * 108.42677 * 67.53208 * 16 6 4 18 18 C 1.50178 * 109.89053 * 311.09640 * 17 16 6 19 19 O 1.21275 * 118.24858 * 197.55937 * 18 17 16 20 20 N 1.33363 * 123.50596 * 17.58453 * 18 17 16 21 21 C 1.46496 * 117.94450 * 177.77508 * 20 18 17 22 22 H 1.08996 * 109.47711 * 185.23666 * 1 2 3 23 23 H 1.09001 * 109.47026 * 305.24119 * 1 2 3 24 24 H 1.09010 * 109.47212 * 65.23888 * 1 2 3 25 25 H 1.08993 * 109.46944 * 120.00154 * 2 1 3 26 26 H 1.08997 * 109.47434 * 39.13629 * 3 2 1 27 27 H 1.08996 * 109.46724 * 159.14056 * 3 2 1 28 28 H 1.09003 * 109.47085 * 279.13282 * 3 2 1 29 29 H 0.96998 * 119.99775 * 180.02562 * 11 10 8 30 30 H 1.09005 * 109.67279 * 187.26535 * 16 6 4 31 31 H 1.09001 * 109.67512 * 307.79373 * 16 6 4 32 32 H 1.09001 * 109.40129 * 71.22848 * 17 16 6 33 33 H 1.09000 * 109.40337 * 191.05905 * 17 16 6 34 34 H 1.09001 * 109.46818 * 267.38158 * 21 20 18 35 35 H 1.08999 * 109.47305 * 27.38109 * 21 20 18 36 36 H 1.08994 * 109.46802 * 147.38349 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 1 1.8314 -0.1109 -2.1280 6 6 1.3227 -2.0649 -1.3853 7 1 0.2747 -1.8967 -1.6333 8 6 1.4194 -2.8235 -0.0868 9 1 2.0133 -2.4305 0.7253 10 6 0.7499 -4.0193 0.0648 11 7 0.0272 -4.4981 -0.9242 12 14 0.8693 -4.9591 1.6747 13 1 -0.2181 -4.5203 2.5859 14 1 0.7358 -6.4141 1.4094 15 1 2.1851 -4.6903 2.3085 16 6 1.9965 -2.8702 -2.5029 17 6 3.4072 -3.2476 -2.0443 18 6 4.1113 -2.0349 -1.5069 19 8 5.3191 -2.0712 -1.4036 20 7 3.4794 -0.9204 -1.1367 21 6 4.2824 0.1722 -0.5821 22 1 -0.3634 -1.0233 0.0938 23 1 -0.3633 0.5930 0.8393 24 1 -0.3634 0.4305 -0.9333 25 1 1.8933 -0.5138 0.8899 26 1 1.4096 2.0507 0.6486 27 1 3.0664 1.4648 0.3659 28 1 2.0073 1.8394 -1.0147 29 1 -0.4442 -5.3391 -0.8175 30 1 1.4211 -3.7744 -2.7018 31 1 2.0543 -2.2651 -3.4076 32 1 3.3435 -4.0053 -1.2633 33 1 3.9684 -3.6455 -2.8898 34 1 4.3156 0.0836 0.5038 35 1 5.2949 0.1183 -0.9822 36 1 3.8341 1.1274 -0.8552 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709971105.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:07 Heat of formation + Delta-G solvation = -51.238853 kcal Electronic energy + Delta-G solvation = -17118.702238 eV Core-core repulsion = 14602.222626 eV Total energy + Delta-G solvation = -2516.479612 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.61851 -38.60067 -36.06881 -34.48738 -33.47462 -30.20299 -28.56954 -27.34417 -26.54421 -24.65659 -22.50820 -21.19877 -19.70028 -17.76495 -17.28224 -17.26655 -16.48929 -16.32794 -15.50007 -15.02321 -14.89222 -14.42003 -14.07219 -13.86066 -13.50897 -13.34468 -12.91443 -12.85672 -12.79606 -12.61710 -12.53368 -12.25465 -11.90140 -11.65496 -11.44853 -11.20161 -11.00701 -10.74835 -10.41737 -10.27898 -9.45970 -8.05919 -6.10361 1.38359 1.44032 1.49627 1.79990 2.34586 2.45727 3.27007 3.89055 4.01848 4.15391 4.34132 4.41622 4.48358 4.57126 4.60736 4.72811 4.76462 4.88905 4.94765 4.99243 5.01558 5.16210 5.20143 5.33418 5.35539 5.40324 5.60599 5.65228 5.75996 5.76859 5.83763 6.02545 6.39670 6.69492 6.94931 7.34490 7.54373 9.01099 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.023113 B = 0.013311 C = 0.010733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.142324 B = 2103.079294 C = 2608.243703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.088 4.088 3 C -0.164 4.164 4 C 0.156 3.844 5 H 0.068 0.932 6 C 0.035 3.965 7 H 0.039 0.961 8 C -0.493 4.493 9 H 0.044 0.956 10 C 0.028 3.972 11 N -0.910 5.910 12 Si 0.925 3.075 13 H -0.277 1.277 14 H -0.289 1.289 15 H -0.282 1.282 16 C -0.106 4.106 17 C -0.109 4.109 18 C 0.523 3.477 19 O -0.619 6.619 20 N -0.586 5.586 21 C 0.059 3.941 22 H 0.048 0.952 23 H 0.059 0.941 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.063 0.937 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.259 0.741 30 H 0.066 0.934 31 H 0.045 0.955 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.051 0.949 35 H 0.058 0.942 36 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.822 9.792 -0.340 9.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.108 4.108 3 C -0.220 4.220 4 C 0.053 3.947 5 H 0.086 0.914 6 C 0.016 3.984 7 H 0.057 0.943 8 C -0.531 4.531 9 H 0.063 0.937 10 C -0.171 4.171 11 N -0.549 5.549 12 Si 0.753 3.247 13 H -0.202 1.202 14 H -0.215 1.215 15 H -0.207 1.207 16 C -0.144 4.144 17 C -0.148 4.148 18 C 0.313 3.687 19 O -0.504 6.504 20 N -0.315 5.315 21 C -0.082 4.082 22 H 0.067 0.933 23 H 0.078 0.922 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.095 0.905 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.064 0.936 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.277 9.628 -0.335 9.718 hybrid contribution -0.103 -1.195 0.973 1.545 sum 1.174 8.432 0.638 8.538 Atomic orbital electron populations 1.21718 0.94229 1.01887 1.01257 1.21194 0.96691 0.95830 0.97043 1.22528 1.02291 0.94738 1.02485 1.21342 0.77713 0.98119 0.97530 0.91401 1.19068 0.95130 0.90195 0.93959 0.94290 1.21078 1.28221 1.04946 0.98878 0.93749 1.25359 0.95573 0.98297 0.97857 1.69973 1.32194 1.20745 1.32024 0.86063 0.77988 0.78334 0.82274 1.20249 1.21497 1.20729 1.21550 0.93817 1.01556 0.97521 1.21327 0.97316 0.95038 1.01156 1.20432 0.86717 0.85006 0.76530 1.90554 1.16491 1.83749 1.59590 1.47272 1.08711 1.14844 1.60717 1.22453 0.96397 0.91202 0.98189 0.93293 0.92231 0.92531 0.92713 0.91789 0.90523 0.91691 0.93209 0.91569 0.93628 0.90197 0.89789 0.93070 0.92291 0.86678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.18 8.26 71.98 0.59 -3.59 16 2 C -0.09 -2.81 1.84 -10.79 -0.02 -2.83 16 3 C -0.16 -3.81 7.67 71.98 0.55 -3.25 16 4 C 0.16 5.58 2.21 45.11 0.10 5.67 16 5 H 0.07 2.20 7.89 -2.39 -0.02 2.18 16 6 C 0.04 1.52 1.50 -11.45 -0.02 1.50 16 7 H 0.04 1.82 7.01 -2.39 -0.02 1.80 16 8 C -0.49 -24.00 4.96 25.60 0.13 -23.87 16 9 H 0.04 2.26 6.41 -2.91 -0.02 2.24 16 10 C 0.03 1.45 5.34 84.65 0.45 1.90 16 11 N -0.91 -48.29 11.88 21.45 0.25 -48.03 16 12 Si 0.93 42.21 29.54 68.60 2.03 44.24 16 13 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 14 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 15 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 16 C -0.11 -4.55 5.42 30.73 0.17 -4.38 16 17 C -0.11 -4.69 5.50 29.71 0.16 -4.53 16 18 C 0.52 22.90 7.20 87.71 0.63 23.53 16 19 O -0.62 -29.98 16.14 -3.01 -0.05 -30.03 16 20 N -0.59 -22.17 3.01 -827.32 -2.49 -24.67 16 21 C 0.06 1.83 8.10 127.77 1.04 2.87 16 22 H 0.05 1.90 6.08 -2.39 -0.01 1.88 16 23 H 0.06 1.61 8.02 -2.39 -0.02 1.59 16 24 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 25 H 0.05 2.03 6.69 -2.39 -0.02 2.02 16 26 H 0.06 1.31 7.89 -2.39 -0.02 1.29 16 27 H 0.08 1.67 4.69 -2.39 -0.01 1.66 16 28 H 0.06 1.35 7.53 -2.39 -0.02 1.34 16 29 H 0.26 13.39 8.31 -92.71 -0.77 12.62 16 30 H 0.07 3.15 6.79 -2.38 -0.02 3.13 16 31 H 0.05 1.74 8.13 -2.39 -0.02 1.72 16 32 H 0.08 3.81 7.43 -2.39 -0.02 3.79 16 33 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 34 H 0.05 1.56 7.60 -2.39 -0.02 1.54 16 35 H 0.06 1.94 7.05 -2.39 -0.02 1.92 16 36 H 0.12 2.73 4.82 -2.39 -0.01 2.72 16 Total: -1.00 -58.27 268.52 4.59 -53.69 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: 1.06 Total: 11.78 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: 3.79 Total: -6.98 kcal Atomic # 7 Polarization: -70.46 SS G_CDS: -2.24 Total: -72.70 kcal Atomic # 8 Polarization: -29.98 SS G_CDS: -0.05 Total: -30.03 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -58.27 4.59 -53.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709971105.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.446 kcal (2) G-P(sol) polarization free energy of solvation -58.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds