Wall clock time and date at job start Mon Mar 30 2020 03:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47017 * 2 1 4 4 C 1.52997 * 109.47352 * 120.00271 * 2 1 3 5 5 H 1.09001 * 109.12760 * 187.17809 * 4 2 1 6 6 C 1.52923 * 109.29959 * 306.66144 * 4 2 1 7 7 H 1.08995 * 109.73783 * 51.23039 * 6 4 2 8 8 C 1.50695 * 109.60472 * 290.82008 * 6 4 2 9 9 H 1.08007 * 119.99896 * 356.49532 * 8 6 4 10 10 C 1.37875 * 120.00268 * 176.49396 * 8 6 4 11 11 N 1.31515 * 120.00132 * 157.67161 * 10 8 6 12 12 Si 1.86803 * 119.99852 * 337.67886 * 10 8 6 13 13 H 1.48492 * 109.47040 * 179.97438 * 12 10 8 14 14 H 1.48496 * 109.47016 * 299.99780 * 12 10 8 15 15 H 1.48502 * 109.46902 * 59.99640 * 12 10 8 16 16 C 1.53347 * 108.67284 * 171.06234 * 6 4 2 17 17 C 1.53062 * 108.42786 * 292.47184 * 16 6 4 18 18 C 1.50178 * 109.89162 * 48.89885 * 17 16 6 19 19 O 1.21285 * 118.24443 * 162.39530 * 18 17 16 20 20 N 1.33343 * 123.51011 * 342.41881 * 18 17 16 21 21 C 1.46501 * 117.95184 * 182.22448 * 20 18 17 22 22 H 1.09003 * 109.46640 * 305.99946 * 1 2 3 23 23 H 1.08995 * 109.47689 * 66.00142 * 1 2 3 24 24 H 1.08997 * 109.46787 * 186.00395 * 1 2 3 25 25 H 1.08997 * 109.46870 * 240.00129 * 2 1 3 26 26 H 1.09002 * 109.47222 * 167.38433 * 3 2 1 27 27 H 1.08996 * 109.47699 * 287.38788 * 3 2 1 28 28 H 1.09005 * 109.46998 * 47.38515 * 3 2 1 29 29 H 0.96997 * 120.00134 * 354.98500 * 11 10 8 30 30 H 1.09007 * 109.66991 * 52.20205 * 16 6 4 31 31 H 1.08997 * 109.67607 * 172.73294 * 16 6 4 32 32 H 1.08998 * 109.40368 * 169.02663 * 17 16 6 33 33 H 1.09003 * 109.40288 * 288.76719 * 17 16 6 34 34 H 1.09003 * 109.46770 * 354.79270 * 21 20 18 35 35 H 1.09000 * 109.47435 * 114.79395 * 21 20 18 36 36 H 1.08995 * 109.47355 * 234.80212 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 3.1224 -0.6079 1.3101 6 6 1.3961 -0.1006 2.4896 7 1 0.3145 -0.0595 2.3613 8 6 1.9340 1.2920 2.6954 9 1 2.7050 1.6749 2.0431 10 6 1.4421 2.0772 3.7163 11 7 2.1618 3.0730 4.1853 12 14 -0.2468 1.7265 4.4336 13 1 -0.5401 2.7056 5.5107 14 1 -1.2720 1.8428 3.3656 15 1 -0.2704 0.3518 4.9948 16 6 1.7372 -0.9690 3.7065 17 6 1.0264 -2.3160 3.5542 18 6 1.2743 -2.8723 2.1815 19 8 1.0690 -4.0530 1.9949 20 7 1.7085 -2.1376 1.1569 21 6 1.8618 -2.7952 -0.1433 22 1 -0.3633 0.6041 0.8314 23 1 -0.3634 0.4179 -0.9388 24 1 -0.3633 -1.0220 0.1075 25 1 1.8933 -0.5138 -0.8900 26 1 3.1066 1.4508 0.2245 27 1 1.8716 1.8875 -0.9806 28 1 1.5050 2.0170 0.7563 29 1 3.0667 3.2106 3.8644 30 1 2.8148 -1.1262 3.7547 31 1 1.3968 -0.4753 4.6167 32 1 1.4067 -3.0126 4.3013 33 1 -0.0450 -2.1787 3.7013 34 1 1.6675 -3.8624 -0.0358 35 1 1.1542 -2.3667 -0.8530 36 1 2.8780 -2.6460 -0.5083 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709971107.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:13 Heat of formation + Delta-G solvation = -43.312738 kcal Electronic energy + Delta-G solvation = -17074.653092 eV Core-core repulsion = 14558.517182 eV Total energy + Delta-G solvation = -2516.135909 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.24240 -37.28380 -34.17406 -33.40152 -32.10022 -28.53752 -26.82789 -26.63168 -25.00611 -22.80928 -20.87351 -19.62732 -17.78589 -17.51283 -16.06063 -15.79327 -15.17908 -14.41698 -14.01853 -13.56295 -13.46188 -13.16607 -12.65616 -12.39816 -12.12946 -12.05271 -11.60166 -11.28576 -11.13122 -11.03549 -10.68682 -10.59205 -10.41595 -10.29176 -10.02887 -9.88950 -9.64404 -9.04883 -8.69712 -8.24251 -8.16031 -6.53147 -4.11419 3.12341 3.33081 3.38917 3.54989 3.58048 4.43532 5.04995 5.17712 5.30470 5.39672 5.62320 5.65185 5.69283 5.77233 5.81594 5.99387 6.07894 6.14203 6.19482 6.22886 6.31912 6.46853 6.56418 6.56628 6.65143 6.70153 6.83843 7.05644 7.07025 7.30063 7.36910 7.82932 8.12092 8.31058 8.65280 8.81957 9.49919 10.84031 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.026708 B = 0.012919 C = 0.010285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.139883 B = 2166.781308 C = 2721.811813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.090 4.090 3 C -0.144 4.144 4 C 0.158 3.842 5 H 0.065 0.935 6 C 0.016 3.984 7 H 0.035 0.965 8 C -0.602 4.602 9 H 0.077 0.923 10 C 0.040 3.960 11 N -0.897 5.897 12 Si 1.028 2.972 13 H -0.287 1.287 14 H -0.283 1.283 15 H -0.276 1.276 16 C -0.126 4.126 17 C -0.138 4.138 18 C 0.521 3.479 19 O -0.582 6.582 20 N -0.597 5.597 21 C 0.069 3.931 22 H 0.070 0.930 23 H 0.044 0.956 24 H 0.044 0.956 25 H 0.055 0.945 26 H 0.047 0.953 27 H 0.029 0.971 28 H 0.102 0.898 29 H 0.270 0.730 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.057 0.943 36 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.699 -5.644 -5.891 8.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.109 4.109 3 C -0.202 4.202 4 C 0.055 3.945 5 H 0.083 0.917 6 C -0.004 4.004 7 H 0.053 0.947 8 C -0.640 4.640 9 H 0.095 0.905 10 C -0.166 4.166 11 N -0.530 5.530 12 Si 0.856 3.144 13 H -0.212 1.212 14 H -0.209 1.209 15 H -0.202 1.202 16 C -0.164 4.164 17 C -0.178 4.178 18 C 0.311 3.689 19 O -0.464 6.464 20 N -0.328 5.328 21 C -0.075 4.075 22 H 0.089 0.911 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.048 0.952 28 H 0.120 0.880 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.105 0.895 33 H 0.108 0.892 34 H 0.102 0.898 35 H 0.075 0.925 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.900 -5.655 -4.872 8.008 hybrid contribution 1.206 -0.531 -1.149 1.749 sum -1.694 -6.186 -6.021 8.797 Atomic orbital electron populations 1.21885 0.95602 1.01135 1.01597 1.21231 0.96100 0.97243 0.96298 1.22215 1.01350 0.95600 1.00988 1.21246 0.99014 0.76741 0.97473 0.91689 1.19403 0.96597 0.95753 0.88628 0.94712 1.22061 1.25739 0.98131 1.18046 0.90468 1.25569 1.03382 0.93992 0.93678 1.70851 1.10640 1.32111 1.39379 0.84268 0.76725 0.76424 0.76943 1.21245 1.20939 1.20181 1.22212 0.99586 0.92696 1.01896 1.21733 1.03066 0.99875 0.93140 1.20277 0.75647 0.85932 0.87090 1.90604 1.54134 1.16856 1.84765 1.47482 1.64572 1.11321 1.09421 1.21685 1.00691 0.99788 0.85304 0.91115 0.93725 0.93660 0.92670 0.93440 0.95231 0.87970 0.91997 0.92428 0.90973 0.89526 0.89211 0.89813 0.92481 0.92714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 8.18 37.16 0.30 -2.09 16 2 C -0.09 -1.51 2.21 -90.62 -0.20 -1.71 16 3 C -0.14 -2.56 7.56 37.16 0.28 -2.28 16 4 C 0.16 2.94 2.13 -68.37 -0.15 2.79 16 5 H 0.07 1.27 8.00 -51.93 -0.42 0.86 16 6 C 0.02 0.33 0.90 -91.63 -0.08 0.24 16 7 H 0.04 0.75 4.63 -51.93 -0.24 0.51 16 8 C -0.60 -14.42 6.28 -34.44 -0.22 -14.64 16 9 H 0.08 1.93 5.35 -52.48 -0.28 1.65 16 10 C 0.04 1.04 5.21 -17.82 -0.09 0.95 16 11 N -0.90 -25.19 13.70 55.43 0.76 -24.43 16 12 Si 1.03 23.15 26.42 -169.99 -4.49 18.66 16 13 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 15 H -0.28 -5.75 5.99 56.52 0.34 -5.41 16 16 C -0.13 -2.53 5.00 -26.52 -0.13 -2.66 16 17 C -0.14 -2.53 6.03 -28.10 -0.17 -2.70 16 18 C 0.52 10.18 7.47 -11.88 -0.09 10.10 16 19 O -0.58 -12.58 15.95 5.55 0.09 -12.50 16 20 N -0.60 -10.79 2.58 -175.17 -0.45 -11.24 16 21 C 0.07 1.05 9.14 59.85 0.55 1.59 16 22 H 0.07 1.30 6.43 -51.93 -0.33 0.96 16 23 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.04 0.74 7.11 -51.93 -0.37 0.37 16 25 H 0.05 0.84 6.50 -51.93 -0.34 0.50 16 26 H 0.05 0.86 7.23 -51.93 -0.38 0.48 16 27 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.10 2.11 5.53 -51.93 -0.29 1.82 16 29 H 0.27 7.55 8.73 -40.82 -0.36 7.19 16 30 H 0.06 1.16 8.13 -51.93 -0.42 0.74 16 31 H 0.07 1.52 5.24 -51.93 -0.27 1.25 16 32 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 33 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 34 H 0.08 1.34 6.61 -51.93 -0.34 1.00 16 35 H 0.06 0.79 6.40 -51.93 -0.33 0.46 16 36 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 265.54 15.07 4.00 4.00 Total: -1.00 -27.35 265.54 -5.43 -32.77 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -5.34 Total: 3.14 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: 0.00 Total: -10.41 kcal Atomic # 7 Polarization: -35.97 SS G_CDS: 0.31 Total: -35.66 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: 0.09 Total: -12.50 kcal Atomic # 14 Polarization: 23.15 SS G_CDS: -4.49 Total: 18.66 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -27.35 -5.43 -32.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709971107.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.538 kcal (2) G-P(sol) polarization free energy of solvation -27.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds