Wall clock time and date at job start Mon Mar 30 2020 03:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47017 * 2 1 4 4 C 1.52997 * 109.47352 * 120.00271 * 2 1 3 5 5 H 1.09001 * 109.12760 * 187.17809 * 4 2 1 6 6 C 1.52923 * 109.29959 * 306.66144 * 4 2 1 7 7 H 1.08995 * 109.73783 * 51.23039 * 6 4 2 8 8 C 1.50695 * 109.60472 * 290.82008 * 6 4 2 9 9 H 1.08007 * 119.99896 * 356.49532 * 8 6 4 10 10 C 1.37875 * 120.00268 * 176.49396 * 8 6 4 11 11 N 1.31515 * 120.00132 * 157.67161 * 10 8 6 12 12 Si 1.86803 * 119.99852 * 337.67886 * 10 8 6 13 13 H 1.48492 * 109.47040 * 179.97438 * 12 10 8 14 14 H 1.48496 * 109.47016 * 299.99780 * 12 10 8 15 15 H 1.48502 * 109.46902 * 59.99640 * 12 10 8 16 16 C 1.53347 * 108.67284 * 171.06234 * 6 4 2 17 17 C 1.53062 * 108.42786 * 292.47184 * 16 6 4 18 18 C 1.50178 * 109.89162 * 48.89885 * 17 16 6 19 19 O 1.21285 * 118.24443 * 162.39530 * 18 17 16 20 20 N 1.33343 * 123.51011 * 342.41881 * 18 17 16 21 21 C 1.46501 * 117.95184 * 182.22448 * 20 18 17 22 22 H 1.09003 * 109.46640 * 305.99946 * 1 2 3 23 23 H 1.08995 * 109.47689 * 66.00142 * 1 2 3 24 24 H 1.08997 * 109.46787 * 186.00395 * 1 2 3 25 25 H 1.08997 * 109.46870 * 240.00129 * 2 1 3 26 26 H 1.09002 * 109.47222 * 167.38433 * 3 2 1 27 27 H 1.08996 * 109.47699 * 287.38788 * 3 2 1 28 28 H 1.09005 * 109.46998 * 47.38515 * 3 2 1 29 29 H 0.96997 * 120.00134 * 354.98500 * 11 10 8 30 30 H 1.09007 * 109.66991 * 52.20205 * 16 6 4 31 31 H 1.08997 * 109.67607 * 172.73294 * 16 6 4 32 32 H 1.08998 * 109.40368 * 169.02663 * 17 16 6 33 33 H 1.09003 * 109.40288 * 288.76719 * 17 16 6 34 34 H 1.09003 * 109.46770 * 354.79270 * 21 20 18 35 35 H 1.09000 * 109.47435 * 114.79395 * 21 20 18 36 36 H 1.08995 * 109.47355 * 234.80212 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 3.1224 -0.6079 1.3101 6 6 1.3961 -0.1006 2.4896 7 1 0.3145 -0.0595 2.3613 8 6 1.9340 1.2920 2.6954 9 1 2.7050 1.6749 2.0431 10 6 1.4421 2.0772 3.7163 11 7 2.1618 3.0730 4.1853 12 14 -0.2468 1.7265 4.4336 13 1 -0.5401 2.7056 5.5107 14 1 -1.2720 1.8428 3.3656 15 1 -0.2704 0.3518 4.9948 16 6 1.7372 -0.9690 3.7065 17 6 1.0264 -2.3160 3.5542 18 6 1.2743 -2.8723 2.1815 19 8 1.0690 -4.0530 1.9949 20 7 1.7085 -2.1376 1.1569 21 6 1.8618 -2.7952 -0.1433 22 1 -0.3633 0.6041 0.8314 23 1 -0.3634 0.4179 -0.9388 24 1 -0.3633 -1.0220 0.1075 25 1 1.8933 -0.5138 -0.8900 26 1 3.1066 1.4508 0.2245 27 1 1.8716 1.8875 -0.9806 28 1 1.5050 2.0170 0.7563 29 1 3.0667 3.2106 3.8644 30 1 2.8148 -1.1262 3.7547 31 1 1.3968 -0.4753 4.6167 32 1 1.4067 -3.0126 4.3013 33 1 -0.0450 -2.1787 3.7013 34 1 1.6675 -3.8624 -0.0358 35 1 1.1542 -2.3667 -0.8530 36 1 2.8780 -2.6460 -0.5083 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709971107.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:13 Heat of formation + Delta-G solvation = -59.473671 kcal Electronic energy + Delta-G solvation = -17075.353882 eV Core-core repulsion = 14558.517182 eV Total energy + Delta-G solvation = -2516.836700 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.74946 -38.83737 -35.78771 -34.89647 -33.90568 -30.16041 -28.20244 -28.04400 -26.60340 -24.44298 -22.55681 -21.06203 -19.56187 -19.15702 -17.55357 -17.29563 -16.64011 -15.90772 -15.71721 -15.21460 -14.89341 -14.62030 -14.34701 -14.05346 -13.50638 -13.42883 -13.02598 -12.75976 -12.66729 -12.61591 -12.30338 -12.21060 -11.91032 -11.79666 -11.65535 -11.58721 -11.22640 -10.73795 -10.40490 -10.16942 -9.61698 -8.56476 -6.12328 1.53510 1.57026 1.61897 1.74772 2.15778 2.58464 3.14915 3.66258 3.88199 3.92387 4.15041 4.28266 4.30042 4.39503 4.55719 4.63573 4.67930 4.74703 4.78316 4.89878 4.93931 4.98441 5.07756 5.15544 5.18945 5.20876 5.42824 5.47257 5.60729 5.67115 5.81946 6.06410 6.25347 6.54345 6.79679 7.16282 7.54309 8.80548 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.026708 B = 0.012919 C = 0.010285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.139883 B = 2166.781308 C = 2721.811813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.086 4.086 3 C -0.137 4.137 4 C 0.163 3.837 5 H 0.054 0.946 6 C 0.013 3.987 7 H 0.038 0.962 8 C -0.581 4.581 9 H 0.059 0.941 10 C -0.006 4.006 11 N -0.939 5.939 12 Si 1.055 2.945 13 H -0.301 1.301 14 H -0.268 1.268 15 H -0.248 1.248 16 C -0.123 4.123 17 C -0.134 4.134 18 C 0.516 3.484 19 O -0.604 6.604 20 N -0.595 5.595 21 C 0.065 3.935 22 H 0.047 0.953 23 H 0.067 0.933 24 H 0.048 0.952 25 H 0.083 0.917 26 H 0.036 0.964 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.256 0.744 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.639 -7.136 -7.218 10.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.105 4.105 3 C -0.194 4.194 4 C 0.060 3.940 5 H 0.072 0.928 6 C -0.007 4.007 7 H 0.055 0.945 8 C -0.619 4.619 9 H 0.077 0.923 10 C -0.205 4.205 11 N -0.575 5.575 12 Si 0.879 3.121 13 H -0.228 1.228 14 H -0.193 1.193 15 H -0.172 1.172 16 C -0.161 4.161 17 C -0.173 4.173 18 C 0.306 3.694 19 O -0.488 6.488 20 N -0.325 5.325 21 C -0.077 4.077 22 H 0.067 0.933 23 H 0.086 0.914 24 H 0.067 0.933 25 H 0.101 0.899 26 H 0.055 0.945 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.122 0.878 33 H 0.120 0.880 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.838 -7.166 -6.230 10.242 hybrid contribution 1.565 -0.066 -0.828 1.771 sum -2.273 -7.232 -7.058 10.357 Atomic orbital electron populations 1.21829 0.94969 1.01040 1.01946 1.21243 0.96535 0.96408 0.96342 1.22040 1.00127 0.96059 1.01186 1.21065 0.98178 0.77333 0.97406 0.92766 1.19359 0.96678 0.94250 0.90383 0.94458 1.22207 1.24034 0.99422 1.16224 0.92280 1.26552 1.05561 0.93830 0.94601 1.70966 1.10491 1.34492 1.41589 0.83930 0.74123 0.77409 0.76624 1.22777 1.19317 1.17218 1.22078 0.99458 0.93703 1.00856 1.21715 1.03642 0.98746 0.93222 1.20448 0.75598 0.85718 0.87661 1.90602 1.55386 1.17665 1.85149 1.47485 1.63785 1.10893 1.10342 1.21867 1.02445 0.99209 0.84164 0.93346 0.91435 0.93328 0.89917 0.94508 0.92793 0.91346 0.93491 0.93088 0.91926 0.87828 0.87950 0.90534 0.90604 0.90826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.21 8.18 71.98 0.59 -3.62 16 2 C -0.09 -2.67 2.21 -10.80 -0.02 -2.69 16 3 C -0.14 -4.64 7.56 71.98 0.54 -4.10 16 4 C 0.16 5.75 2.13 45.10 0.10 5.84 16 5 H 0.05 2.05 8.00 -2.39 -0.02 2.03 16 6 C 0.01 0.51 0.90 -11.45 -0.01 0.50 16 7 H 0.04 1.53 4.63 -2.39 -0.01 1.52 16 8 C -0.58 -27.94 6.28 25.60 0.16 -27.78 16 9 H 0.06 3.03 5.35 -2.91 -0.02 3.01 16 10 C -0.01 -0.30 5.21 84.65 0.44 0.14 16 11 N -0.94 -54.34 13.70 21.45 0.29 -54.05 16 12 Si 1.05 46.14 26.42 68.60 1.81 47.95 16 13 H -0.30 -13.86 7.11 99.48 0.71 -13.16 16 14 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 15 H -0.25 -9.63 5.99 99.48 0.60 -9.04 16 16 C -0.12 -4.75 5.00 30.73 0.15 -4.60 16 17 C -0.13 -4.54 6.03 29.70 0.18 -4.37 16 18 C 0.52 18.88 7.47 87.72 0.66 19.53 16 19 O -0.60 -24.73 15.95 -3.04 -0.05 -24.78 16 20 N -0.60 -19.89 2.58 -827.30 -2.13 -22.02 16 21 C 0.07 1.77 9.14 127.77 1.17 2.94 16 22 H 0.05 1.66 6.43 -2.39 -0.02 1.65 16 23 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.05 1.42 7.11 -2.39 -0.02 1.40 16 25 H 0.08 2.16 6.50 -2.39 -0.02 2.14 16 26 H 0.04 1.30 7.23 -2.39 -0.02 1.28 16 27 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.07 2.80 5.53 -2.38 -0.01 2.79 16 29 H 0.26 14.96 8.73 -92.71 -0.81 14.15 16 30 H 0.05 2.01 8.13 -2.38 -0.02 1.99 16 31 H 0.06 2.54 5.24 -2.39 -0.01 2.53 16 32 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 33 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 34 H 0.08 2.24 6.61 -2.39 -0.02 2.22 16 35 H 0.08 1.79 6.40 -2.39 -0.02 1.77 16 36 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -58.55 265.54 4.79 -53.76 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: 0.92 Total: 17.33 kcal Atomic # 6 Polarization: -22.15 SS G_CDS: 3.95 Total: -18.20 kcal Atomic # 7 Polarization: -74.23 SS G_CDS: -1.84 Total: -76.07 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -0.05 Total: -24.78 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 1.81 Total: 47.95 kcal Total: -58.55 4.79 -53.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709971107.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.713 kcal (2) G-P(sol) polarization free energy of solvation -58.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds