Wall clock time and date at job start Mon Mar 30 2020 03:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.46898 * 2 1 4 4 C 1.53002 * 109.47098 * 240.00175 * 2 1 3 5 5 C 1.52996 * 109.47157 * 120.00066 * 2 1 3 6 6 C 1.52998 * 109.47372 * 65.52104 * 5 2 1 7 7 H 1.09003 * 110.28033 * 51.98694 * 6 5 2 8 8 N 1.46761 * 110.24956 * 290.01093 * 6 5 2 9 9 C 1.34416 * 111.30212 * 258.01609 * 8 6 5 10 10 O 1.21284 * 124.94216 * 179.55920 * 9 8 6 11 11 C 1.51278 * 110.11647 * 359.58853 * 9 8 6 12 12 C 1.54485 * 110.24896 * 173.96018 * 6 5 2 13 13 H 1.08997 * 110.97019 * 211.71077 * 12 6 5 14 14 C 1.50703 * 110.99681 * 335.45337 * 12 6 5 15 15 H 1.07994 * 120.00502 * 350.96618 * 14 12 6 16 16 C 1.37878 * 119.99468 * 170.96256 * 14 12 6 17 17 N 1.31517 * 120.00334 * 0.02562 * 16 14 12 18 18 Si 1.86802 * 119.99959 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46799 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47115 * 120.00211 * 18 16 14 21 21 H 1.48492 * 109.47347 * 240.00508 * 18 16 14 22 22 H 1.09003 * 109.47737 * 284.24771 * 1 2 3 23 23 H 1.08997 * 109.47682 * 44.25028 * 1 2 3 24 24 H 1.09010 * 109.47084 * 164.25039 * 1 2 3 25 25 H 1.08997 * 109.46889 * 179.97438 * 3 2 1 26 26 H 1.08998 * 109.47465 * 299.99767 * 3 2 1 27 27 H 1.09008 * 109.47111 * 59.99964 * 3 2 1 28 28 H 1.08995 * 109.46994 * 299.99521 * 4 2 1 29 29 H 1.08995 * 109.47099 * 59.99727 * 4 2 1 30 30 H 1.08997 * 109.47070 * 180.02562 * 4 2 1 31 31 H 1.09004 * 109.46894 * 305.52236 * 5 2 1 32 32 H 1.08998 * 109.47482 * 185.52632 * 5 2 1 33 33 H 0.97000 * 124.34844 * 78.03004 * 8 6 5 34 34 H 1.08996 * 110.49024 * 225.07365 * 11 9 8 35 35 H 1.09000 * 110.60046 * 102.48060 * 11 9 8 36 36 H 0.96997 * 120.00218 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2492 6 6 1.6465 -2.1982 1.1818 7 1 1.9607 -2.6299 0.2315 8 7 0.1963 -2.3458 1.3520 9 6 -0.1108 -2.7486 2.5970 10 8 -1.2358 -2.9406 3.0074 11 6 1.1510 -2.9269 3.4122 12 6 2.2805 -2.9746 2.3573 13 1 2.5036 -4.0023 2.0707 14 6 3.5181 -2.2771 2.8601 15 1 3.9285 -1.4426 2.3110 16 6 4.1265 -2.7044 4.0213 17 7 3.6270 -3.7209 4.6898 18 14 5.6610 -1.8404 4.6444 19 1 6.0179 -0.7361 3.7178 20 1 5.4021 -1.2863 5.9976 21 1 6.7824 -2.8113 4.7132 22 1 -0.3635 0.2529 0.9960 23 1 -0.3634 0.7361 -0.7171 24 1 -0.3634 -0.9892 -0.2790 25 1 3.1299 1.4425 0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6765 1.9563 0.8900 28 1 1.6767 -1.7489 -1.2492 29 1 1.6766 -0.2074 -2.1392 30 1 3.1299 -0.7216 -1.2490 31 1 1.5981 -0.2677 2.1364 32 1 3.1255 -0.6364 1.3001 33 1 -0.4567 -2.1748 0.6554 34 1 1.1138 -3.8605 3.9736 35 1 1.2944 -2.0827 4.0866 36 1 4.0552 -4.0218 5.5065 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709988288.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:06 Heat of formation + Delta-G solvation = -49.612572 kcal Electronic energy + Delta-G solvation = -16619.117156 eV Core-core repulsion = 14102.708066 eV Total energy + Delta-G solvation = -2516.409091 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.83246 -37.29737 -35.17507 -32.90177 -30.11942 -28.47389 -27.06929 -26.96906 -25.33981 -23.59413 -19.87352 -19.40866 -18.60662 -16.69799 -16.06144 -14.88873 -14.58523 -14.36574 -14.08749 -13.90212 -13.57125 -12.91079 -12.40516 -12.36283 -12.28400 -11.92374 -11.57753 -11.31969 -11.13629 -11.04369 -10.87186 -10.77806 -10.54817 -10.35689 -10.11952 -9.67033 -9.35723 -9.27957 -8.73431 -8.40987 -8.15234 -6.13038 -4.18020 3.24240 3.33659 3.34890 3.54016 4.21543 4.36268 5.07220 5.13062 5.15191 5.22038 5.66886 5.72034 5.76311 5.82996 5.92569 5.96663 6.02423 6.09378 6.17776 6.25399 6.32634 6.44340 6.51649 6.63631 6.69585 6.79926 6.84047 7.03820 7.44304 7.58778 7.76208 7.83315 7.87328 8.23562 8.82955 9.15702 9.48205 10.96561 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.022585 B = 0.011205 C = 0.008236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.458717 B = 2498.273043 C = 3398.909985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.077 4.077 3 C -0.137 4.137 4 C -0.142 4.142 5 C -0.109 4.109 6 C 0.130 3.870 7 H 0.071 0.929 8 N -0.732 5.732 9 C 0.509 3.491 10 O -0.573 6.573 11 C -0.125 4.125 12 C 0.049 3.951 13 H 0.040 0.960 14 C -0.520 4.520 15 H 0.074 0.926 16 C 0.065 3.935 17 N -0.885 5.885 18 Si 0.891 3.109 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.284 1.284 22 H 0.055 0.945 23 H 0.044 0.956 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.046 0.954 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.045 0.955 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.392 0.608 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.216 6.398 -9.089 11.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.077 4.077 3 C -0.195 4.195 4 C -0.200 4.200 5 C -0.147 4.147 6 C 0.026 3.974 7 H 0.089 0.911 8 N -0.390 5.390 9 C 0.298 3.702 10 O -0.453 6.453 11 C -0.165 4.165 12 C 0.030 3.970 13 H 0.058 0.942 14 C -0.558 4.558 15 H 0.091 0.909 16 C -0.138 4.138 17 N -0.522 5.522 18 Si 0.719 3.281 19 H -0.196 1.196 20 H -0.211 1.211 21 H -0.211 1.211 22 H 0.074 0.926 23 H 0.063 0.937 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.110 0.890 33 H 0.233 0.767 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.676 6.158 -8.626 10.730 hybrid contribution 0.567 0.492 0.144 0.764 sum -1.109 6.650 -8.483 10.835 Atomic orbital electron populations 1.22077 0.95513 1.00538 1.01434 1.20684 0.95041 0.95412 0.96545 1.21840 1.00972 0.95728 1.00924 1.21953 1.01237 1.00211 0.96556 1.22138 1.02729 0.94427 0.95369 1.21928 0.78507 0.96164 1.00848 0.91115 1.46964 1.09455 1.68949 1.13595 1.21909 0.91223 0.73661 0.83427 1.90607 1.25522 1.53851 1.75347 1.22318 0.91146 1.04100 0.98976 1.19658 0.92933 0.95804 0.88616 0.94199 1.21234 1.09641 1.16425 1.08496 0.90857 1.25002 0.97227 0.94823 0.96739 1.69975 1.40009 1.25436 1.16790 0.86545 0.83077 0.79601 0.78857 1.19645 1.21060 1.21062 0.92565 0.93674 0.92880 0.92676 0.93488 0.92912 0.92400 0.93602 0.92481 0.91818 0.88952 0.76682 0.89177 0.89212 0.92832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 7.33 37.16 0.27 -1.54 16 2 C -0.08 -1.04 0.80 -154.51 -0.12 -1.17 16 3 C -0.14 -1.71 8.41 37.16 0.31 -1.40 16 4 C -0.14 -1.77 7.94 37.16 0.29 -1.47 16 5 C -0.11 -1.82 3.32 -26.73 -0.09 -1.91 16 6 C 0.13 2.36 3.05 -67.01 -0.20 2.15 16 7 H 0.07 1.19 5.95 -51.93 -0.31 0.88 16 8 N -0.73 -13.29 4.78 -52.76 -0.25 -13.54 16 9 C 0.51 11.20 8.43 -10.86 -0.09 11.11 16 10 O -0.57 -14.23 18.03 5.55 0.10 -14.13 16 11 C -0.12 -2.91 5.30 -26.74 -0.14 -3.05 16 12 C 0.05 1.10 3.04 -90.13 -0.27 0.82 16 13 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 14 C -0.52 -12.55 7.79 -34.44 -0.27 -12.82 16 15 H 0.07 1.69 5.16 -52.49 -0.27 1.42 16 16 C 0.07 1.66 5.32 -17.82 -0.09 1.56 16 17 N -0.88 -23.85 12.20 55.43 0.68 -23.18 16 18 Si 0.89 19.87 29.54 -169.99 -5.02 14.85 16 19 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 H 0.06 0.81 7.98 -51.93 -0.41 0.40 16 23 H 0.04 0.52 8.04 -51.93 -0.42 0.10 16 24 H 0.05 0.68 5.23 -51.92 -0.27 0.41 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 28 H 0.06 0.73 6.17 -51.93 -0.32 0.41 16 29 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.06 1.18 8.05 -51.93 -0.42 0.76 16 32 H 0.09 1.65 5.54 -51.93 -0.29 1.37 16 33 H 0.39 6.26 6.00 -40.82 -0.24 6.01 16 34 H 0.09 2.27 7.90 -51.93 -0.41 1.86 16 35 H 0.09 2.19 7.89 -51.93 -0.41 1.78 16 36 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 277.67 15.07 4.18 4.18 Total: -1.00 -27.53 277.67 -6.17 -33.69 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -5.45 Total: 5.82 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: -0.41 Total: -7.70 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: 0.42 Total: -36.72 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: 0.10 Total: -14.13 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -27.53 -6.17 -33.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709988288.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.919 kcal (2) G-P(sol) polarization free energy of solvation -27.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds