Wall clock time and date at job start Mon Mar 30 2020 03:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.46898 * 2 1 4 4 C 1.53002 * 109.47098 * 240.00175 * 2 1 3 5 5 C 1.52996 * 109.47157 * 120.00066 * 2 1 3 6 6 C 1.52998 * 109.47372 * 65.52104 * 5 2 1 7 7 H 1.09003 * 110.28033 * 51.98694 * 6 5 2 8 8 N 1.46761 * 110.24956 * 290.01093 * 6 5 2 9 9 C 1.34416 * 111.30212 * 258.01609 * 8 6 5 10 10 O 1.21284 * 124.94216 * 179.55920 * 9 8 6 11 11 C 1.51278 * 110.11647 * 359.58853 * 9 8 6 12 12 C 1.54485 * 110.24896 * 173.96018 * 6 5 2 13 13 H 1.08997 * 110.97019 * 211.71077 * 12 6 5 14 14 C 1.50703 * 110.99681 * 335.45337 * 12 6 5 15 15 H 1.07994 * 120.00502 * 350.96618 * 14 12 6 16 16 C 1.37878 * 119.99468 * 170.96256 * 14 12 6 17 17 N 1.31517 * 120.00334 * 0.02562 * 16 14 12 18 18 Si 1.86802 * 119.99959 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46799 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47115 * 120.00211 * 18 16 14 21 21 H 1.48492 * 109.47347 * 240.00508 * 18 16 14 22 22 H 1.09003 * 109.47737 * 284.24771 * 1 2 3 23 23 H 1.08997 * 109.47682 * 44.25028 * 1 2 3 24 24 H 1.09010 * 109.47084 * 164.25039 * 1 2 3 25 25 H 1.08997 * 109.46889 * 179.97438 * 3 2 1 26 26 H 1.08998 * 109.47465 * 299.99767 * 3 2 1 27 27 H 1.09008 * 109.47111 * 59.99964 * 3 2 1 28 28 H 1.08995 * 109.46994 * 299.99521 * 4 2 1 29 29 H 1.08995 * 109.47099 * 59.99727 * 4 2 1 30 30 H 1.08997 * 109.47070 * 180.02562 * 4 2 1 31 31 H 1.09004 * 109.46894 * 305.52236 * 5 2 1 32 32 H 1.08998 * 109.47482 * 185.52632 * 5 2 1 33 33 H 0.97000 * 124.34844 * 78.03004 * 8 6 5 34 34 H 1.08996 * 110.49024 * 225.07365 * 11 9 8 35 35 H 1.09000 * 110.60046 * 102.48060 * 11 9 8 36 36 H 0.96997 * 120.00218 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2492 6 6 1.6465 -2.1982 1.1818 7 1 1.9607 -2.6299 0.2315 8 7 0.1963 -2.3458 1.3520 9 6 -0.1108 -2.7486 2.5970 10 8 -1.2358 -2.9406 3.0074 11 6 1.1510 -2.9269 3.4122 12 6 2.2805 -2.9746 2.3573 13 1 2.5036 -4.0023 2.0707 14 6 3.5181 -2.2771 2.8601 15 1 3.9285 -1.4426 2.3110 16 6 4.1265 -2.7044 4.0213 17 7 3.6270 -3.7209 4.6898 18 14 5.6610 -1.8404 4.6444 19 1 6.0179 -0.7361 3.7178 20 1 5.4021 -1.2863 5.9976 21 1 6.7824 -2.8113 4.7132 22 1 -0.3635 0.2529 0.9960 23 1 -0.3634 0.7361 -0.7171 24 1 -0.3634 -0.9892 -0.2790 25 1 3.1299 1.4425 0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6765 1.9563 0.8900 28 1 1.6767 -1.7489 -1.2492 29 1 1.6766 -0.2074 -2.1392 30 1 3.1299 -0.7216 -1.2490 31 1 1.5981 -0.2677 2.1364 32 1 3.1255 -0.6364 1.3001 33 1 -0.4567 -2.1748 0.6554 34 1 1.1138 -3.8605 3.9736 35 1 1.2944 -2.0827 4.0866 36 1 4.0552 -4.0218 5.5065 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709988288.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:06 Heat of formation + Delta-G solvation = -66.000069 kcal Electronic energy + Delta-G solvation = -16619.827772 eV Core-core repulsion = 14102.708066 eV Total energy + Delta-G solvation = -2517.119706 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.48673 -38.78419 -36.76370 -34.76372 -31.90812 -30.04342 -28.08512 -28.01926 -27.15464 -25.23452 -21.65507 -21.10402 -19.85964 -18.36384 -17.87166 -16.66676 -16.25171 -15.98526 -15.39319 -15.24203 -14.80928 -14.49767 -14.20932 -14.08523 -13.58460 -13.09468 -12.85261 -12.80907 -12.72963 -12.59165 -12.37098 -12.19031 -12.07254 -11.58103 -11.49844 -11.20720 -11.17664 -10.87819 -10.62463 -10.31457 -9.76079 -8.09125 -6.18202 1.46365 1.50627 1.59317 1.71318 2.46711 2.63224 3.24505 3.83653 3.94866 4.05283 4.10983 4.29731 4.51806 4.59127 4.73666 4.80965 4.87467 4.90351 4.98571 5.00036 5.08038 5.16646 5.20766 5.29666 5.44093 5.47605 5.52919 5.58467 5.68745 5.73932 5.92081 6.08459 6.17430 6.35732 6.90923 7.43153 7.52012 9.00724 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.022585 B = 0.011205 C = 0.008236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.458717 B = 2498.273043 C = 3398.909985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.073 4.073 3 C -0.136 4.136 4 C -0.141 4.141 5 C -0.102 4.102 6 C 0.140 3.860 7 H 0.096 0.904 8 N -0.707 5.707 9 C 0.510 3.490 10 O -0.601 6.601 11 C -0.117 4.117 12 C 0.041 3.959 13 H 0.018 0.982 14 C -0.518 4.518 15 H 0.087 0.913 16 C 0.014 3.986 17 N -0.921 5.921 18 Si 0.950 3.050 19 H -0.257 1.257 20 H -0.291 1.291 21 H -0.287 1.287 22 H 0.038 0.962 23 H 0.066 0.934 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.066 0.934 27 H 0.045 0.955 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.042 0.958 32 H 0.084 0.916 33 H 0.409 0.591 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.833 7.950 -11.286 13.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.073 4.073 3 C -0.193 4.193 4 C -0.198 4.198 5 C -0.140 4.140 6 C 0.036 3.964 7 H 0.114 0.886 8 N -0.364 5.364 9 C 0.299 3.701 10 O -0.485 6.485 11 C -0.158 4.158 12 C 0.022 3.978 13 H 0.036 0.964 14 C -0.556 4.556 15 H 0.105 0.895 16 C -0.186 4.186 17 N -0.560 5.560 18 Si 0.777 3.223 19 H -0.180 1.180 20 H -0.217 1.217 21 H -0.213 1.213 22 H 0.057 0.943 23 H 0.085 0.915 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.085 0.915 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.102 0.898 33 H 0.254 0.746 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.282 7.736 -10.876 13.408 hybrid contribution 0.446 0.007 0.802 0.917 sum -0.836 7.743 -10.074 12.734 Atomic orbital electron populations 1.22056 0.95023 1.01323 1.01078 1.20636 0.95373 0.95971 0.95292 1.21825 1.01045 0.94835 1.01629 1.21940 1.01301 1.00109 0.96486 1.22021 1.02043 0.93325 0.96607 1.21887 0.77727 0.96884 0.99938 0.88616 1.46755 1.09967 1.67115 1.12554 1.21597 0.90112 0.73966 0.84429 1.90590 1.26217 1.55486 1.76170 1.22107 0.92653 1.01991 0.99058 1.19630 0.92725 0.95276 0.90161 0.96393 1.21625 1.09649 1.16203 1.08107 0.89489 1.25753 0.99948 0.95490 0.97360 1.70112 1.41485 1.27170 1.17260 0.85613 0.79777 0.78835 0.78104 1.18015 1.21738 1.21340 0.94322 0.91481 0.92630 0.92617 0.91479 0.93563 0.92571 0.91555 0.92470 0.93887 0.89786 0.74650 0.91874 0.90887 0.93230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 7.33 71.98 0.53 -2.64 16 2 C -0.07 -1.75 0.80 -52.18 -0.04 -1.79 16 3 C -0.14 -2.95 8.41 71.98 0.61 -2.34 16 4 C -0.14 -2.95 7.94 71.98 0.57 -2.38 16 5 C -0.10 -3.24 3.32 30.59 0.10 -3.14 16 6 C 0.14 4.85 3.05 45.45 0.14 4.99 16 7 H 0.10 2.95 5.95 -2.39 -0.01 2.94 16 8 N -0.71 -24.65 4.78 -439.44 -2.10 -26.75 16 9 C 0.51 22.55 8.43 87.90 0.74 23.30 16 10 O -0.60 -30.04 18.03 -3.04 -0.05 -30.10 16 11 C -0.12 -5.63 5.30 30.59 0.16 -5.46 16 12 C 0.04 1.86 3.04 -10.48 -0.03 1.83 16 13 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 14 C -0.52 -24.89 7.79 25.60 0.20 -24.69 16 15 H 0.09 3.89 5.16 -2.91 -0.02 3.88 16 16 C 0.01 0.70 5.32 84.65 0.45 1.15 16 17 N -0.92 -51.00 12.20 21.45 0.26 -50.74 16 18 Si 0.95 40.75 29.54 68.60 2.03 42.78 16 19 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 20 H -0.29 -12.70 7.11 99.48 0.71 -12.00 16 21 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 22 H 0.04 1.03 7.98 -2.39 -0.02 1.01 16 23 H 0.07 1.28 8.04 -2.39 -0.02 1.26 16 24 H 0.06 1.23 5.23 -2.38 -0.01 1.22 16 25 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 28 H 0.06 1.19 6.17 -2.39 -0.01 1.17 16 29 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.04 1.55 8.05 -2.38 -0.02 1.53 16 32 H 0.08 2.84 5.54 -2.39 -0.01 2.83 16 33 H 0.41 12.05 6.00 -92.71 -0.56 11.50 16 34 H 0.06 3.34 7.90 -2.39 -0.02 3.32 16 35 H 0.07 3.71 7.89 -2.39 -0.02 3.69 16 36 H 0.26 13.85 8.31 -92.71 -0.77 13.08 16 Total: -1.00 -59.29 277.67 4.07 -55.21 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: 0.51 Total: 20.77 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: 3.42 Total: -11.19 kcal Atomic # 7 Polarization: -75.65 SS G_CDS: -1.84 Total: -77.48 kcal Atomic # 8 Polarization: -30.04 SS G_CDS: -0.05 Total: -30.10 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 2.03 Total: 42.78 kcal Total: -59.29 4.07 -55.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709988288.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.786 kcal (2) G-P(sol) polarization free energy of solvation -59.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds