Wall clock time and date at job start Mon Mar 30 2020 02:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46963 * 2 1 4 4 C 1.53001 * 109.99646 * 173.09966 * 3 2 1 5 5 C 1.53001 * 109.46794 * 179.50479 * 4 3 2 6 6 C 1.54320 * 109.88262 * 294.19703 * 3 2 1 7 7 C 1.55156 * 103.10170 * 141.69953 * 6 3 2 8 8 C 1.54911 * 101.58247 * 324.40979 * 7 6 3 9 9 N 1.47429 * 104.83180 * 37.00797 * 8 7 6 10 10 C 1.34776 * 125.64594 * 155.91405 * 9 8 7 11 11 O 1.21689 * 119.99708 * 175.14681 * 10 9 8 12 12 C 1.46374 * 120.00212 * 355.14839 * 10 9 8 13 13 H 1.08001 * 119.99711 * 0.02562 * 12 10 9 14 14 C 1.40046 * 119.99669 * 179.97438 * 12 10 9 15 15 N 1.30670 * 120.00358 * 0.02562 * 14 12 10 16 16 Si 1.86810 * 119.99709 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.46723 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.46800 * 120.00386 * 16 14 12 19 19 H 1.48500 * 109.46958 * 240.00413 * 16 14 12 20 20 H 1.09005 * 109.46949 * 177.00670 * 1 2 3 21 21 H 1.09000 * 109.47265 * 297.00488 * 1 2 3 22 22 H 1.08999 * 109.47213 * 57.00881 * 1 2 3 23 23 H 1.09004 * 109.47119 * 240.00251 * 2 1 3 24 24 H 1.09005 * 109.47208 * 120.00243 * 2 1 3 25 25 H 1.09003 * 109.47189 * 299.50198 * 4 3 2 26 26 H 1.08996 * 109.47209 * 59.50434 * 4 3 2 27 27 H 1.08995 * 109.47355 * 61.28678 * 5 4 3 28 28 H 1.09005 * 109.46604 * 181.28378 * 5 4 3 29 29 H 1.09001 * 109.47396 * 301.27613 * 5 4 3 30 30 H 1.08999 * 110.72247 * 23.24852 * 6 3 2 31 31 H 1.09005 * 110.71930 * 260.14854 * 6 3 2 32 32 H 1.09007 * 111.00767 * 82.48220 * 7 6 3 33 33 H 1.08996 * 111.00888 * 206.33411 * 7 6 3 34 34 H 1.08998 * 110.36851 * 155.84749 * 8 7 6 35 35 H 1.08999 * 110.36461 * 278.06304 * 8 7 6 36 36 H 0.96999 * 119.99865 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5601 1.4601 0.1727 5 6 4.0582 2.9066 0.1587 6 6 1.6541 2.1356 -1.3237 7 6 1.2882 3.5747 -0.8736 8 6 0.6244 3.3113 0.5011 9 7 1.4006 2.2043 1.0891 10 6 1.5082 1.9326 2.4048 11 8 2.1054 0.9386 2.7738 12 6 0.9068 2.8330 3.3897 13 1 0.3764 3.7149 3.0620 14 6 1.0182 2.5503 4.7568 15 7 1.6595 1.4829 5.1531 16 14 0.2513 3.6998 6.0138 17 1 -0.4129 4.8277 5.3126 18 1 -0.7528 2.9564 6.8165 19 1 1.3095 4.2286 6.9114 20 1 -0.3633 -1.0263 -0.0537 21 1 -0.3634 0.4666 0.9156 22 1 -0.3633 0.5596 -0.8619 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 3.8232 0.9944 1.1225 26 1 4.0249 0.9077 -0.6439 27 1 3.6109 3.4530 0.9890 28 1 5.1436 2.9181 0.2589 29 1 3.7752 3.3793 -0.7819 30 1 0.7948 1.6442 -1.7802 31 1 2.4991 2.1500 -2.0121 32 1 2.1820 4.1891 -0.7645 33 1 0.5829 4.0334 -1.5665 34 1 0.6916 4.1983 1.1310 35 1 -0.4172 3.0184 0.3694 36 1 1.7369 1.2874 6.1000 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721241694.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:07 Heat of formation + Delta-G solvation = -48.167039 kcal Electronic energy + Delta-G solvation = -16986.662374 eV Core-core repulsion = 14470.315967 eV Total energy + Delta-G solvation = -2516.346408 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.45603 -35.75969 -32.80454 -32.36875 -31.60797 -30.17171 -26.91677 -26.02840 -23.79528 -21.51345 -21.29989 -20.41521 -17.73660 -16.22498 -15.68324 -15.36869 -14.21686 -14.19322 -13.93020 -13.14699 -12.91705 -12.42016 -12.25749 -12.17177 -11.82742 -11.62177 -11.54155 -11.12181 -11.04656 -10.95114 -10.68671 -10.56588 -10.39316 -10.22242 -10.08621 -9.94791 -9.80037 -9.55804 -8.81821 -7.46690 -7.04243 -6.14519 -4.58702 3.13813 3.22347 3.26336 4.11216 4.61348 4.62334 5.15976 5.29305 5.35239 5.57749 5.71180 5.85337 5.87049 5.92127 5.99436 6.08979 6.13296 6.15368 6.21518 6.24582 6.48094 6.50121 6.55224 6.65342 6.74827 6.80751 6.92801 6.98838 7.04909 7.09369 7.47989 7.58178 8.20151 8.51942 9.07265 9.62646 10.63958 10.85372 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.031788 B = 0.009783 C = 0.009495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.612515 B = 2861.340838 C = 2948.304698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.124 4.124 3 C 0.175 3.825 4 C -0.124 4.124 5 C -0.144 4.144 6 C -0.125 4.125 7 C -0.139 4.139 8 C 0.119 3.881 9 N -0.629 5.629 10 C 0.577 3.423 11 O -0.571 6.571 12 C -0.541 4.541 13 H 0.067 0.933 14 C 0.088 3.912 15 N -0.768 5.768 16 Si 0.903 3.097 17 H -0.264 1.264 18 H -0.277 1.277 19 H -0.277 1.277 20 H 0.039 0.961 21 H 0.062 0.938 22 H 0.043 0.957 23 H 0.047 0.953 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.049 0.951 27 H 0.062 0.938 28 H 0.039 0.961 29 H 0.048 0.952 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.043 0.957 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.851 3.031 -10.347 10.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.162 4.162 3 C 0.089 3.911 4 C -0.163 4.163 5 C -0.201 4.201 6 C -0.163 4.163 7 C -0.177 4.177 8 C -0.006 4.006 9 N -0.369 5.369 10 C 0.383 3.617 11 O -0.453 6.453 12 C -0.578 4.578 13 H 0.085 0.915 14 C -0.131 4.131 15 N -0.397 5.397 16 Si 0.728 3.272 17 H -0.188 1.188 18 H -0.202 1.202 19 H -0.202 1.202 20 H 0.058 0.942 21 H 0.081 0.919 22 H 0.062 0.938 23 H 0.066 0.934 24 H 0.096 0.904 25 H 0.097 0.903 26 H 0.068 0.932 27 H 0.081 0.919 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.061 0.939 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.449 2.340 -9.870 10.154 hybrid contribution -0.457 0.635 0.610 0.992 sum -0.906 2.976 -9.260 9.768 Atomic orbital electron populations 1.21659 0.96277 0.99867 1.01851 1.21789 0.96005 0.96833 1.01583 1.20702 0.92035 0.91369 0.86975 1.21789 0.95289 0.96914 1.02297 1.21794 0.99277 0.97465 1.01548 1.22722 1.00910 0.95934 0.96760 1.22939 1.00819 0.96685 0.97290 1.21849 0.94405 0.91681 0.92629 1.48795 1.52705 1.30345 1.05025 1.17887 0.80109 0.85646 0.78056 1.90577 1.47006 1.29854 1.77836 1.20960 1.37204 1.09533 0.90108 0.91463 1.25688 0.93601 0.94747 0.99045 1.70027 1.31580 1.22449 1.15690 0.86392 0.79298 0.80864 0.80668 1.18831 1.20245 1.20242 0.94214 0.91875 0.93767 0.93383 0.90360 0.90296 0.93247 0.91938 0.94229 0.93301 0.91275 0.91508 0.90790 0.91649 0.91572 0.93875 0.92307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.47 37.16 0.35 -2.17 16 2 C -0.12 -2.36 4.79 -26.73 -0.13 -2.49 16 3 C 0.18 3.32 0.37 -130.59 -0.05 3.27 16 4 C -0.12 -2.37 4.78 -26.73 -0.13 -2.49 16 5 C -0.14 -2.50 8.52 37.16 0.32 -2.19 16 6 C -0.13 -1.88 5.27 -24.90 -0.13 -2.01 16 7 C -0.14 -2.04 6.48 -24.58 -0.16 -2.20 16 8 C 0.12 2.20 6.62 -2.53 -0.02 2.18 16 9 N -0.63 -13.92 1.15 -157.12 -0.18 -14.10 16 10 C 0.58 16.02 7.09 -12.99 -0.09 15.93 16 11 O -0.57 -17.79 12.79 5.20 0.07 -17.72 16 12 C -0.54 -15.18 9.00 -35.63 -0.32 -15.50 16 13 H 0.07 1.76 6.54 -52.49 -0.34 1.42 16 14 C 0.09 2.46 5.50 -17.37 -0.10 2.37 16 15 N -0.77 -22.93 11.83 55.55 0.66 -22.27 16 16 Si 0.90 20.27 29.56 -169.99 -5.02 15.25 16 17 H -0.26 -5.74 7.11 56.52 0.40 -5.34 16 18 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 19 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 20 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 21 H 0.06 1.35 7.31 -51.93 -0.38 0.97 16 22 H 0.04 0.70 6.34 -51.93 -0.33 0.37 16 23 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 24 H 0.08 1.79 7.00 -51.93 -0.36 1.43 16 25 H 0.08 1.82 6.90 -51.93 -0.36 1.46 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.06 1.26 7.65 -51.93 -0.40 0.87 16 28 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.73 5.35 -51.93 -0.28 0.45 16 30 H 0.07 0.98 6.12 -51.93 -0.32 0.66 16 31 H 0.07 0.90 7.38 -51.93 -0.38 0.51 16 32 H 0.07 1.07 5.91 -51.93 -0.31 0.76 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.07 1.26 6.97 -51.93 -0.36 0.90 16 35 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.27 7.24 8.29 -40.82 -0.34 6.90 16 LS Contribution 275.14 15.07 4.15 4.15 Total: -1.00 -31.87 275.14 -6.28 -38.14 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -5.49 Total: 1.86 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: -0.45 Total: -5.30 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: 0.48 Total: -36.37 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: 0.07 Total: -17.72 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -31.87 -6.28 -38.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721241694.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.026 kcal (2) G-P(sol) polarization free energy of solvation -31.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds