Wall clock time and date at job start Mon Mar 30 2020 02:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46963 * 2 1 4 4 C 1.53001 * 109.99646 * 173.09966 * 3 2 1 5 5 C 1.53001 * 109.46794 * 179.50479 * 4 3 2 6 6 C 1.54320 * 109.88262 * 294.19703 * 3 2 1 7 7 C 1.55156 * 103.10170 * 141.69953 * 6 3 2 8 8 C 1.54911 * 101.58247 * 324.40979 * 7 6 3 9 9 N 1.47429 * 104.83180 * 37.00797 * 8 7 6 10 10 C 1.34776 * 125.64594 * 155.91405 * 9 8 7 11 11 O 1.21689 * 119.99708 * 175.14681 * 10 9 8 12 12 C 1.46374 * 120.00212 * 355.14839 * 10 9 8 13 13 H 1.08001 * 119.99711 * 0.02562 * 12 10 9 14 14 C 1.40046 * 119.99669 * 179.97438 * 12 10 9 15 15 N 1.30670 * 120.00358 * 0.02562 * 14 12 10 16 16 Si 1.86810 * 119.99709 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.46723 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.46800 * 120.00386 * 16 14 12 19 19 H 1.48500 * 109.46958 * 240.00413 * 16 14 12 20 20 H 1.09005 * 109.46949 * 177.00670 * 1 2 3 21 21 H 1.09000 * 109.47265 * 297.00488 * 1 2 3 22 22 H 1.08999 * 109.47213 * 57.00881 * 1 2 3 23 23 H 1.09004 * 109.47119 * 240.00251 * 2 1 3 24 24 H 1.09005 * 109.47208 * 120.00243 * 2 1 3 25 25 H 1.09003 * 109.47189 * 299.50198 * 4 3 2 26 26 H 1.08996 * 109.47209 * 59.50434 * 4 3 2 27 27 H 1.08995 * 109.47355 * 61.28678 * 5 4 3 28 28 H 1.09005 * 109.46604 * 181.28378 * 5 4 3 29 29 H 1.09001 * 109.47396 * 301.27613 * 5 4 3 30 30 H 1.08999 * 110.72247 * 23.24852 * 6 3 2 31 31 H 1.09005 * 110.71930 * 260.14854 * 6 3 2 32 32 H 1.09007 * 111.00767 * 82.48220 * 7 6 3 33 33 H 1.08996 * 111.00888 * 206.33411 * 7 6 3 34 34 H 1.08998 * 110.36851 * 155.84749 * 8 7 6 35 35 H 1.08999 * 110.36461 * 278.06304 * 8 7 6 36 36 H 0.96999 * 119.99865 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5601 1.4601 0.1727 5 6 4.0582 2.9066 0.1587 6 6 1.6541 2.1356 -1.3237 7 6 1.2882 3.5747 -0.8736 8 6 0.6244 3.3113 0.5011 9 7 1.4006 2.2043 1.0891 10 6 1.5082 1.9326 2.4048 11 8 2.1054 0.9386 2.7738 12 6 0.9068 2.8330 3.3897 13 1 0.3764 3.7149 3.0620 14 6 1.0182 2.5503 4.7568 15 7 1.6595 1.4829 5.1531 16 14 0.2513 3.6998 6.0138 17 1 -0.4129 4.8277 5.3126 18 1 -0.7528 2.9564 6.8165 19 1 1.3095 4.2286 6.9114 20 1 -0.3633 -1.0263 -0.0537 21 1 -0.3634 0.4666 0.9156 22 1 -0.3633 0.5596 -0.8619 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 3.8232 0.9944 1.1225 26 1 4.0249 0.9077 -0.6439 27 1 3.6109 3.4530 0.9890 28 1 5.1436 2.9181 0.2589 29 1 3.7752 3.3793 -0.7819 30 1 0.7948 1.6442 -1.7802 31 1 2.4991 2.1500 -2.0121 32 1 2.1820 4.1891 -0.7645 33 1 0.5829 4.0334 -1.5665 34 1 0.6916 4.1983 1.1310 35 1 -0.4172 3.0184 0.3694 36 1 1.7369 1.2874 6.1000 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721241694.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:06 Heat of formation + Delta-G solvation = -67.973906 kcal Electronic energy + Delta-G solvation = -16987.521265 eV Core-core repulsion = 14470.315967 eV Total energy + Delta-G solvation = -2517.205298 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.03437 -37.77561 -34.63386 -34.20624 -33.11082 -31.77678 -28.55057 -27.92521 -25.30434 -23.11105 -22.83780 -21.98586 -19.51168 -18.11186 -17.35244 -17.12433 -15.98442 -15.79255 -15.48436 -14.93172 -14.41636 -13.92352 -13.92158 -13.73251 -13.54285 -13.14258 -13.07295 -12.87001 -12.78624 -12.45995 -12.41570 -12.06665 -12.01605 -11.88653 -11.63121 -11.58793 -11.23334 -10.94640 -10.91695 -9.61114 -8.86208 -8.24003 -6.78143 1.36334 1.36523 1.53410 2.23117 2.53066 2.97331 3.67756 3.79774 3.91145 4.15774 4.20307 4.31927 4.42863 4.45716 4.59371 4.64142 4.77460 4.80628 4.87227 4.98963 5.06553 5.08519 5.19109 5.23359 5.31313 5.36062 5.38439 5.43902 5.47347 5.54052 5.59270 5.84986 6.16780 6.62021 6.92305 7.67459 8.57113 8.78165 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.031788 B = 0.009783 C = 0.009495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.612515 B = 2861.340838 C = 2948.304698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.123 4.123 3 C 0.161 3.839 4 C -0.124 4.124 5 C -0.134 4.134 6 C -0.113 4.113 7 C -0.124 4.124 8 C 0.108 3.892 9 N -0.631 5.631 10 C 0.564 3.436 11 O -0.620 6.620 12 C -0.570 4.570 13 H 0.079 0.921 14 C 0.031 3.969 15 N -0.823 5.823 16 Si 0.989 3.011 17 H -0.249 1.249 18 H -0.270 1.270 19 H -0.269 1.269 20 H 0.051 0.949 21 H 0.019 0.981 22 H 0.076 0.924 23 H 0.083 0.917 24 H 0.024 0.976 25 H 0.022 0.978 26 H 0.081 0.919 27 H 0.024 0.976 28 H 0.049 0.951 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.104 0.896 34 H 0.053 0.947 35 H 0.049 0.951 36 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.737 4.856 -13.030 14.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.162 4.162 3 C 0.076 3.924 4 C -0.162 4.162 5 C -0.191 4.191 6 C -0.151 4.151 7 C -0.162 4.162 8 C -0.015 4.015 9 N -0.368 5.368 10 C 0.369 3.631 11 O -0.506 6.506 12 C -0.607 4.607 13 H 0.097 0.903 14 C -0.184 4.184 15 N -0.453 5.453 16 Si 0.809 3.191 17 H -0.172 1.172 18 H -0.195 1.195 19 H -0.194 1.194 20 H 0.070 0.930 21 H 0.038 0.962 22 H 0.095 0.905 23 H 0.101 0.899 24 H 0.043 0.957 25 H 0.040 0.960 26 H 0.099 0.901 27 H 0.044 0.956 28 H 0.068 0.932 29 H 0.103 0.897 30 H 0.105 0.895 31 H 0.115 0.885 32 H 0.096 0.904 33 H 0.122 0.878 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.349 4.192 -12.614 13.361 hybrid contribution -0.161 0.018 1.368 1.378 sum -1.510 4.210 -11.246 12.102 Atomic orbital electron populations 1.21576 0.95468 1.00790 1.00928 1.21767 0.96691 0.97070 1.00628 1.21060 0.91662 0.91412 0.88258 1.21767 0.96031 0.97963 1.00480 1.21717 0.99655 0.95979 1.01785 1.22712 1.02787 0.95297 0.94295 1.22904 1.01489 0.96828 0.94976 1.22100 0.94761 0.89901 0.94779 1.48522 1.52491 1.31490 1.04278 1.18082 0.79640 0.85059 0.80281 1.90535 1.48821 1.31580 1.79634 1.21454 1.37797 1.10227 0.91250 0.90299 1.26870 0.93638 0.96416 1.01445 1.70202 1.33607 1.25056 1.16472 0.85106 0.78355 0.78455 0.77222 1.17175 1.19458 1.19442 0.92968 0.96221 0.90505 0.89859 0.95668 0.95952 0.90062 0.95629 0.93214 0.89725 0.89474 0.88529 0.90429 0.87754 0.92870 0.93321 0.91942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.62 9.47 71.98 0.68 -3.94 16 2 C -0.12 -4.68 4.79 30.59 0.15 -4.53 16 3 C 0.16 5.95 0.37 3.86 0.00 5.95 16 4 C -0.12 -4.69 4.78 30.60 0.15 -4.54 16 5 C -0.13 -4.51 8.52 71.98 0.61 -3.90 16 6 C -0.11 -2.86 5.27 31.78 0.17 -2.69 16 7 C -0.12 -3.09 6.48 31.99 0.21 -2.88 16 8 C 0.11 3.85 6.62 86.85 0.57 4.42 16 9 N -0.63 -28.37 1.15 -769.22 -0.88 -29.25 16 10 C 0.56 33.02 7.09 86.36 0.61 33.64 16 11 O -0.62 -41.52 12.79 -4.31 -0.06 -41.58 16 12 C -0.57 -33.24 9.00 24.83 0.22 -33.02 16 13 H 0.08 4.23 6.54 -2.91 -0.02 4.21 16 14 C 0.03 1.76 5.50 85.30 0.47 2.23 16 15 N -0.82 -51.72 11.83 21.83 0.26 -51.46 16 16 Si 0.99 42.51 29.56 68.60 2.03 44.54 16 17 H -0.25 -9.93 7.11 99.48 0.71 -9.22 16 18 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 19 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 20 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 21 H 0.02 0.83 7.31 -2.39 -0.02 0.82 16 22 H 0.08 2.19 6.34 -2.39 -0.02 2.17 16 23 H 0.08 2.53 8.14 -2.39 -0.02 2.52 16 24 H 0.02 1.20 7.00 -2.38 -0.02 1.19 16 25 H 0.02 1.08 6.90 -2.39 -0.02 1.06 16 26 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 27 H 0.02 1.02 7.65 -2.39 -0.02 1.00 16 28 H 0.05 1.53 8.14 -2.38 -0.02 1.52 16 29 H 0.08 2.21 5.35 -2.39 -0.01 2.20 16 30 H 0.09 1.94 6.12 -2.39 -0.01 1.93 16 31 H 0.10 1.96 7.38 -2.38 -0.02 1.94 16 32 H 0.08 1.90 5.91 -2.38 -0.01 1.89 16 33 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.05 2.00 6.97 -2.39 -0.02 1.99 16 35 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.27 15.47 8.29 -92.71 -0.77 14.70 16 Total: -1.00 -76.62 275.14 6.25 -70.37 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: 1.06 Total: 16.64 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: 3.84 Total: -9.26 kcal Atomic # 7 Polarization: -80.09 SS G_CDS: -0.62 Total: -80.72 kcal Atomic # 8 Polarization: -41.52 SS G_CDS: -0.06 Total: -41.58 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -76.62 6.25 -70.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721241694.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.399 kcal (2) G-P(sol) polarization free energy of solvation -76.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds