Wall clock time and date at job start Mon Mar 30 2020 02:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 112.90552 * 2 1 4 4 C 1.53387 * 113.68900 * 131.42025 * 2 1 3 5 5 H 1.09001 * 112.82303 * 27.92031 * 4 2 1 6 6 C 1.53194 * 87.42758 * 140.68506 * 4 2 1 7 7 H 1.08995 * 114.18748 * 218.15791 * 6 4 2 8 8 C 1.53065 * 113.67518 * 86.03996 * 6 4 2 9 9 C 1.53016 * 109.41282 * 50.38265 * 8 6 4 10 10 C 1.52942 * 108.92872 * 295.35237 * 9 8 6 11 11 N 1.45089 * 114.63067 * 257.75229 * 4 2 1 12 12 C 1.36943 * 118.48132 * 106.22956 * 11 4 2 13 13 H 1.08001 * 120.00090 * 26.31368 * 12 11 4 14 14 C 1.38814 * 119.99853 * 206.31133 * 12 11 4 15 15 N 1.31612 * 119.99873 * 14.00299 * 14 12 11 16 16 Si 1.86796 * 119.99878 * 194.00438 * 14 12 11 17 17 H 1.48505 * 109.47108 * 89.99907 * 16 14 12 18 18 H 1.48496 * 109.47031 * 209.99876 * 16 14 12 19 19 H 1.48502 * 109.47344 * 330.00015 * 16 14 12 20 20 C 1.53876 * 113.68545 * 228.45190 * 2 1 3 21 21 H 1.08996 * 113.63949 * 334.06773 * 20 2 1 22 22 O 1.42906 * 113.63865 * 104.96083 * 20 2 1 23 23 H 1.08994 * 109.46842 * 288.58017 * 1 2 3 24 24 H 1.08997 * 109.47138 * 48.57834 * 1 2 3 25 25 H 1.09005 * 109.47222 * 168.57793 * 1 2 3 26 26 H 1.08999 * 109.47122 * 159.56017 * 3 2 1 27 27 H 1.09003 * 109.46774 * 279.56037 * 3 2 1 28 28 H 1.09000 * 109.46619 * 39.55565 * 3 2 1 29 29 H 1.08999 * 109.48014 * 290.39944 * 8 6 4 30 30 H 1.09001 * 109.48128 * 170.36987 * 8 6 4 31 31 H 1.09005 * 109.56202 * 55.18110 * 9 8 6 32 32 H 1.08996 * 109.56635 * 175.40110 * 9 8 6 33 33 H 1.09007 * 109.39661 * 177.47483 * 10 9 8 34 34 H 1.09000 * 109.39749 * 297.21104 * 10 9 8 35 35 H 0.97003 * 120.00215 * 180.02562 * 15 14 12 36 36 H 0.96694 * 113.99817 * 180.02562 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4094 0.0000 4 6 2.1462 -0.9293 1.0533 5 1 1.5032 -1.7741 1.2999 6 6 3.2029 -1.3000 0.0079 7 1 3.4931 -2.3505 0.0194 8 6 4.3963 -0.3421 -0.0263 9 6 4.9393 -0.1553 1.3920 10 6 3.8728 0.5336 2.2448 11 7 2.6454 -0.2547 2.2369 12 6 1.9314 -0.3634 3.4004 13 1 1.3015 -1.2243 3.5691 14 6 2.0175 0.6329 4.3632 15 7 2.5519 1.7968 4.0597 16 14 1.3748 0.3218 6.0893 17 1 2.4636 -0.2391 6.9292 18 1 0.9027 1.6000 6.6795 19 1 0.2474 -0.6430 6.0313 20 6 2.1481 -0.9346 -1.0546 21 1 1.5014 -1.7661 -1.3345 22 8 2.6878 -0.2460 -2.1846 23 1 -0.3633 0.3274 0.9741 24 1 -0.3633 0.6799 -0.7706 25 1 -0.3634 -1.0073 -0.2035 26 1 3.1539 1.3693 0.3589 27 1 2.1096 1.8105 -1.0134 28 1 1.5370 2.0524 0.6545 29 1 4.0776 0.6216 -0.4234 30 1 5.1775 -0.7573 -0.6630 31 1 5.1784 -1.1279 1.8223 32 1 5.8379 0.4606 1.3607 33 1 4.2347 0.6301 3.2686 34 1 3.6694 1.5246 1.8391 35 1 2.6124 2.4929 4.7325 36 1 3.0773 -0.8286 -2.8509 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872254694.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:50 Heat of formation + Delta-G solvation = 4.092185 kcal Electronic energy + Delta-G solvation = -17250.083175 eV Core-core repulsion = 14736.002898 eV Total energy + Delta-G solvation = -2514.080278 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.40806 -35.78474 -33.90439 -32.73003 -30.20877 -29.75542 -26.65354 -25.37027 -24.24851 -22.29179 -20.95574 -19.18950 -17.29642 -17.01899 -16.42848 -14.94277 -14.67701 -14.37734 -13.91903 -13.19971 -13.09977 -12.47325 -12.36765 -12.11649 -11.80332 -11.58140 -11.23252 -11.16295 -10.92900 -10.81138 -10.71185 -10.19600 -10.16848 -10.02908 -9.68965 -9.51912 -9.35132 -9.03814 -8.85008 -8.28479 -6.57909 -5.72029 -3.16369 3.39562 3.46582 3.47366 4.49896 4.70355 5.11502 5.27134 5.37440 5.40892 5.59285 5.74030 5.84401 5.99356 6.02184 6.12299 6.26907 6.31473 6.37292 6.41807 6.56982 6.66895 6.71757 6.75368 6.85354 6.95959 6.99529 7.12682 7.26732 7.39583 7.52799 7.81578 7.91168 8.06387 8.51418 9.30948 9.96598 10.40456 11.33818 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.036242 B = 0.010582 C = 0.009459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.401526 B = 2645.290972 C = 2959.526600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.093 4.093 3 C -0.126 4.126 4 C 0.184 3.816 5 H 0.071 0.929 6 C -0.151 4.151 7 H 0.064 0.936 8 C -0.103 4.103 9 C -0.146 4.146 10 C 0.179 3.821 11 N -0.568 5.568 12 C -0.259 4.259 13 H 0.065 0.935 14 C 0.006 3.994 15 N -0.903 5.903 16 Si 0.901 3.099 17 H -0.289 1.289 18 H -0.292 1.292 19 H -0.280 1.280 20 C 0.078 3.922 21 H 0.068 0.932 22 O -0.553 6.553 23 H 0.063 0.937 24 H 0.041 0.959 25 H 0.042 0.958 26 H 0.089 0.911 27 H 0.038 0.962 28 H 0.051 0.949 29 H 0.088 0.912 30 H 0.039 0.961 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.038 0.962 35 H 0.252 0.748 36 H 0.363 0.637 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.197 -4.537 -8.868 10.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.097 4.097 3 C -0.182 4.182 4 C 0.074 3.926 5 H 0.089 0.911 6 C -0.171 4.171 7 H 0.083 0.917 8 C -0.140 4.140 9 C -0.185 4.185 10 C 0.054 3.946 11 N -0.286 5.286 12 C -0.389 4.389 13 H 0.083 0.917 14 C -0.193 4.193 15 N -0.547 5.547 16 Si 0.731 3.269 17 H -0.216 1.216 18 H -0.218 1.218 19 H -0.206 1.206 20 C 0.019 3.981 21 H 0.086 0.914 22 O -0.356 6.356 23 H 0.082 0.918 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.107 0.893 27 H 0.057 0.943 28 H 0.070 0.930 29 H 0.106 0.894 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 1.021 -3.846 -8.386 9.283 hybrid contribution -0.251 -0.723 0.583 0.962 sum 0.770 -4.570 -7.803 9.076 Atomic orbital electron populations 1.21637 0.95307 0.99902 1.01599 1.22775 0.94508 0.97070 0.95342 1.21819 1.03142 0.93924 0.99335 1.21003 0.92485 0.93642 0.85519 0.91147 1.23435 0.96634 0.98551 0.98478 0.91747 1.21454 0.95254 1.00388 0.96923 1.22094 0.99274 1.00750 0.96368 1.20648 0.83314 0.92276 0.98344 1.43176 1.22774 1.57560 1.05123 1.19261 1.23702 1.02137 0.93826 0.91725 1.25000 1.00326 0.94766 0.99189 1.70058 1.48885 1.03036 1.32715 0.86309 0.78548 0.76959 0.85038 1.21576 1.21830 1.20554 1.23642 0.94990 0.95206 0.84305 0.91379 1.86557 1.79319 1.37148 1.32585 0.91822 0.94000 0.93906 0.89284 0.94309 0.92966 0.89365 0.94222 0.93188 0.93108 0.91214 0.94411 0.93735 0.79176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.31 9.16 37.16 0.34 -1.97 16 2 C -0.09 -1.81 1.35 -153.85 -0.21 -2.02 16 3 C -0.13 -2.63 7.03 37.16 0.26 -2.37 16 4 C 0.18 3.87 3.51 -68.40 -0.24 3.63 16 5 H 0.07 1.47 7.96 -51.93 -0.41 1.06 16 6 C -0.15 -2.69 4.29 -89.91 -0.39 -3.08 16 7 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 8 C -0.10 -1.86 4.70 -26.69 -0.13 -1.98 16 9 C -0.15 -2.89 6.04 -26.75 -0.16 -3.05 16 10 C 0.18 4.29 3.99 -4.40 -0.02 4.27 16 11 N -0.57 -13.97 2.67 -166.88 -0.45 -14.41 16 12 C -0.26 -7.02 9.48 -15.06 -0.14 -7.16 16 13 H 0.06 1.73 7.83 -52.49 -0.41 1.32 16 14 C 0.01 0.16 4.91 -17.43 -0.09 0.07 16 15 N -0.90 -25.78 10.90 55.49 0.61 -25.18 16 16 Si 0.90 21.73 29.58 -169.99 -5.03 16.70 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 C 0.08 1.28 4.58 -25.71 -0.12 1.16 16 21 H 0.07 1.00 7.97 -51.93 -0.41 0.59 16 22 O -0.55 -8.51 11.29 -35.23 -0.40 -8.90 16 23 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 24 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.04 0.68 7.94 -51.93 -0.41 0.27 16 26 H 0.09 1.93 1.99 -51.93 -0.10 1.83 16 27 H 0.04 0.76 7.50 -51.93 -0.39 0.37 16 28 H 0.05 1.21 8.07 -51.93 -0.42 0.79 16 29 H 0.09 1.69 4.17 -51.93 -0.22 1.47 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 1.87 6.47 -51.93 -0.34 1.53 16 34 H 0.04 0.98 5.66 -51.93 -0.29 0.68 16 35 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 36 H 0.36 3.88 9.12 45.56 0.42 4.30 16 LS Contribution 266.64 15.07 4.02 4.02 Total: -1.00 -29.04 266.64 -6.80 -35.84 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -4.66 Total: 4.44 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: -0.88 Total: -12.50 kcal Atomic # 7 Polarization: -39.75 SS G_CDS: 0.16 Total: -39.59 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: -0.40 Total: -8.90 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -29.04 -6.80 -35.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872254694.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.929 kcal (2) G-P(sol) polarization free energy of solvation -29.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds