Wall clock time and date at job start Mon Mar 30 2020 02:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 112.90552 * 2 1 4 4 C 1.53387 * 113.68900 * 131.42025 * 2 1 3 5 5 H 1.09001 * 112.82303 * 27.92031 * 4 2 1 6 6 C 1.53194 * 87.42758 * 140.68506 * 4 2 1 7 7 H 1.08995 * 114.18748 * 218.15791 * 6 4 2 8 8 C 1.53065 * 113.67518 * 86.03996 * 6 4 2 9 9 C 1.53016 * 109.41282 * 50.38265 * 8 6 4 10 10 C 1.52942 * 108.92872 * 295.35237 * 9 8 6 11 11 N 1.45089 * 114.63067 * 257.75229 * 4 2 1 12 12 C 1.36943 * 118.48132 * 106.22956 * 11 4 2 13 13 H 1.08001 * 120.00090 * 26.31368 * 12 11 4 14 14 C 1.38814 * 119.99853 * 206.31133 * 12 11 4 15 15 N 1.31612 * 119.99873 * 14.00299 * 14 12 11 16 16 Si 1.86796 * 119.99878 * 194.00438 * 14 12 11 17 17 H 1.48505 * 109.47108 * 89.99907 * 16 14 12 18 18 H 1.48496 * 109.47031 * 209.99876 * 16 14 12 19 19 H 1.48502 * 109.47344 * 330.00015 * 16 14 12 20 20 C 1.53876 * 113.68545 * 228.45190 * 2 1 3 21 21 H 1.08996 * 113.63949 * 334.06773 * 20 2 1 22 22 O 1.42906 * 113.63865 * 104.96083 * 20 2 1 23 23 H 1.08994 * 109.46842 * 288.58017 * 1 2 3 24 24 H 1.08997 * 109.47138 * 48.57834 * 1 2 3 25 25 H 1.09005 * 109.47222 * 168.57793 * 1 2 3 26 26 H 1.08999 * 109.47122 * 159.56017 * 3 2 1 27 27 H 1.09003 * 109.46774 * 279.56037 * 3 2 1 28 28 H 1.09000 * 109.46619 * 39.55565 * 3 2 1 29 29 H 1.08999 * 109.48014 * 290.39944 * 8 6 4 30 30 H 1.09001 * 109.48128 * 170.36987 * 8 6 4 31 31 H 1.09005 * 109.56202 * 55.18110 * 9 8 6 32 32 H 1.08996 * 109.56635 * 175.40110 * 9 8 6 33 33 H 1.09007 * 109.39661 * 177.47483 * 10 9 8 34 34 H 1.09000 * 109.39749 * 297.21104 * 10 9 8 35 35 H 0.97003 * 120.00215 * 180.02562 * 15 14 12 36 36 H 0.96694 * 113.99817 * 180.02562 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4094 0.0000 4 6 2.1462 -0.9293 1.0533 5 1 1.5032 -1.7741 1.2999 6 6 3.2029 -1.3000 0.0079 7 1 3.4931 -2.3505 0.0194 8 6 4.3963 -0.3421 -0.0263 9 6 4.9393 -0.1553 1.3920 10 6 3.8728 0.5336 2.2448 11 7 2.6454 -0.2547 2.2369 12 6 1.9314 -0.3634 3.4004 13 1 1.3015 -1.2243 3.5691 14 6 2.0175 0.6329 4.3632 15 7 2.5519 1.7968 4.0597 16 14 1.3748 0.3218 6.0893 17 1 2.4636 -0.2391 6.9292 18 1 0.9027 1.6000 6.6795 19 1 0.2474 -0.6430 6.0313 20 6 2.1481 -0.9346 -1.0546 21 1 1.5014 -1.7661 -1.3345 22 8 2.6878 -0.2460 -2.1846 23 1 -0.3633 0.3274 0.9741 24 1 -0.3633 0.6799 -0.7706 25 1 -0.3634 -1.0073 -0.2035 26 1 3.1539 1.3693 0.3589 27 1 2.1096 1.8105 -1.0134 28 1 1.5370 2.0524 0.6545 29 1 4.0776 0.6216 -0.4234 30 1 5.1775 -0.7573 -0.6630 31 1 5.1784 -1.1279 1.8223 32 1 5.8379 0.4606 1.3607 33 1 4.2347 0.6301 3.2686 34 1 3.6694 1.5246 1.8391 35 1 2.6124 2.4929 4.7325 36 1 3.0773 -0.8286 -2.8509 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872254694.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:49 Heat of formation + Delta-G solvation = -15.143152 kcal Electronic energy + Delta-G solvation = -17250.917282 eV Core-core repulsion = 14736.002898 eV Total energy + Delta-G solvation = -2514.914385 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.92479 -37.32218 -35.45086 -34.43816 -32.14198 -31.33258 -28.24542 -27.18409 -25.93443 -23.95488 -22.55539 -20.78085 -18.94148 -18.71237 -17.89633 -16.66927 -16.38517 -15.89649 -15.68480 -14.84313 -14.78167 -14.15071 -13.91091 -13.70624 -13.25077 -13.21455 -12.97063 -12.81401 -12.70821 -12.62584 -12.43172 -12.05859 -11.89102 -11.64159 -11.31406 -11.16263 -10.95992 -10.60885 -10.44337 -10.15605 -8.54450 -7.79372 -5.25816 1.45640 1.46736 1.54961 2.52701 3.31473 3.41717 3.68705 3.79644 3.93748 4.05939 4.12250 4.37474 4.50064 4.54876 4.68993 4.71932 4.78511 4.89574 4.90986 5.05148 5.07000 5.13955 5.18099 5.23560 5.38772 5.42039 5.54863 5.59238 5.71503 5.73260 5.76679 6.01446 6.44162 7.12025 7.24678 8.03284 8.39089 9.23460 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.036242 B = 0.010582 C = 0.009459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.401526 B = 2645.290972 C = 2959.526600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.106 4.106 3 C -0.115 4.115 4 C 0.161 3.839 5 H 0.070 0.930 6 C -0.144 4.144 7 H 0.085 0.915 8 C -0.098 4.098 9 C -0.138 4.138 10 C 0.189 3.811 11 N -0.582 5.582 12 C -0.265 4.265 13 H 0.064 0.936 14 C -0.047 4.047 15 N -0.932 5.932 16 Si 0.961 3.039 17 H -0.287 1.287 18 H -0.298 1.298 19 H -0.270 1.270 20 C 0.105 3.895 21 H 0.100 0.900 22 O -0.563 6.563 23 H 0.031 0.969 24 H 0.051 0.949 25 H 0.068 0.932 26 H 0.081 0.919 27 H 0.049 0.951 28 H 0.012 0.988 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.050 0.950 32 H 0.066 0.934 33 H 0.030 0.970 34 H 0.012 0.988 35 H 0.246 0.754 36 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.355 -6.463 -10.804 12.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.109 4.109 3 C -0.171 4.171 4 C 0.052 3.948 5 H 0.088 0.912 6 C -0.164 4.164 7 H 0.104 0.896 8 C -0.135 4.135 9 C -0.176 4.176 10 C 0.064 3.936 11 N -0.301 5.301 12 C -0.396 4.396 13 H 0.082 0.918 14 C -0.242 4.242 15 N -0.578 5.578 16 Si 0.790 3.210 17 H -0.214 1.214 18 H -0.224 1.224 19 H -0.195 1.195 20 C 0.045 3.955 21 H 0.117 0.883 22 O -0.370 6.370 23 H 0.050 0.950 24 H 0.070 0.930 25 H 0.087 0.913 26 H 0.099 0.901 27 H 0.068 0.932 28 H 0.031 0.969 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.049 0.951 34 H 0.030 0.970 35 H 0.055 0.945 36 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 1.180 -5.810 -10.367 11.943 hybrid contribution -0.299 -0.122 1.138 1.183 sum 0.881 -5.932 -9.229 11.007 Atomic orbital electron populations 1.21582 0.94620 1.01613 1.00151 1.22735 0.95228 0.96197 0.96783 1.21682 1.02024 0.94681 0.98761 1.21324 0.94496 0.93768 0.85173 0.91213 1.23409 0.96115 0.99575 0.97318 0.89643 1.21391 0.96220 1.00187 0.95661 1.21967 0.98348 1.00366 0.96936 1.20361 0.84537 0.91901 0.96775 1.43332 1.23002 1.57827 1.05913 1.19563 1.23199 1.01749 0.95064 0.91823 1.25686 1.01359 0.94714 1.02475 1.70226 1.50566 1.03724 1.33286 0.85361 0.78139 0.76516 0.80994 1.21445 1.22446 1.19514 1.23322 0.93982 0.94218 0.83953 0.88293 1.86498 1.79496 1.38241 1.32742 0.95007 0.93006 0.91292 0.90115 0.93241 0.96863 0.90559 0.91026 0.93121 0.91537 0.95112 0.97049 0.94455 0.76206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.29 9.16 71.98 0.66 -3.63 16 2 C -0.11 -3.96 1.35 -51.76 -0.07 -4.03 16 3 C -0.11 -4.83 7.03 71.98 0.51 -4.33 16 4 C 0.16 6.57 3.51 45.44 0.16 6.73 16 5 H 0.07 2.81 7.96 -2.39 -0.02 2.79 16 6 C -0.14 -4.65 4.29 -10.33 -0.04 -4.69 16 7 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 8 C -0.10 -3.22 4.70 30.62 0.14 -3.08 16 9 C -0.14 -5.28 6.04 30.58 0.18 -5.09 16 10 C 0.19 9.32 3.99 86.48 0.35 9.66 16 11 N -0.58 -28.97 2.67 -681.87 -1.82 -30.79 16 12 C -0.27 -14.64 9.48 84.03 0.80 -13.85 16 13 H 0.06 3.45 7.83 -2.91 -0.02 3.43 16 14 C -0.05 -2.65 4.91 84.86 0.42 -2.24 16 15 N -0.93 -55.60 10.90 21.65 0.24 -55.37 16 16 Si 0.96 45.75 29.58 68.60 2.03 47.78 16 17 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 18 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 19 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 20 C 0.10 3.00 4.58 31.26 0.14 3.15 16 21 H 0.10 2.33 7.97 -2.39 -0.02 2.31 16 22 O -0.56 -14.72 11.29 -148.98 -1.68 -16.40 16 23 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.07 2.02 7.94 -2.38 -0.02 2.00 16 26 H 0.08 3.54 1.99 -2.39 0.00 3.54 16 27 H 0.05 1.91 7.50 -2.39 -0.02 1.89 16 28 H 0.01 0.60 8.07 -2.39 -0.02 0.58 16 29 H 0.08 2.75 4.17 -2.39 -0.01 2.74 16 30 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 32 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.03 1.71 6.47 -2.38 -0.02 1.70 16 34 H 0.01 0.63 5.66 -2.39 -0.01 0.62 16 35 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 36 H 0.39 6.13 9.12 -74.06 -0.68 5.46 16 Total: -1.00 -64.49 266.64 2.40 -62.08 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: 0.40 Total: 14.09 kcal Atomic # 6 Polarization: -24.64 SS G_CDS: 3.24 Total: -21.40 kcal Atomic # 7 Polarization: -84.57 SS G_CDS: -1.58 Total: -86.16 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -1.68 Total: -16.40 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -64.49 2.40 -62.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872254694.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.940 kcal (2) G-P(sol) polarization free energy of solvation -64.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds