Wall clock time and date at job start Mon Mar 30 2020 03:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53002 * 109.46817 * 240.00231 * 2 1 3 5 5 H 1.09002 * 109.47075 * 299.99262 * 4 2 1 6 6 C 1.52997 * 109.47415 * 59.99873 * 4 2 1 7 7 C 1.53006 * 109.46711 * 180.02562 * 4 2 1 8 8 C 1.52997 * 109.47445 * 59.99695 * 7 4 2 9 9 C 1.53002 * 109.47092 * 300.00075 * 8 7 4 10 10 C 1.53000 * 109.47060 * 120.00319 * 2 1 3 11 11 H 1.09001 * 109.47194 * 299.99650 * 10 2 1 12 12 N 1.46496 * 109.47631 * 59.99933 * 10 2 1 13 13 C 1.34773 * 120.00380 * 205.00251 * 12 10 2 14 14 O 1.21685 * 119.99652 * 359.97438 * 13 12 10 15 15 C 1.46376 * 120.00095 * 180.02562 * 13 12 10 16 16 H 1.07999 * 120.00137 * 359.97438 * 15 13 12 17 17 C 1.40046 * 120.00118 * 179.97438 * 15 13 12 18 18 N 1.30677 * 119.99578 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 120.00468 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47020 * 89.99604 * 19 17 15 21 21 H 1.48496 * 109.47335 * 210.00162 * 19 17 15 22 22 H 1.48506 * 109.46389 * 329.99989 * 19 17 15 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 25 25 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 26 26 H 1.09002 * 109.47045 * 59.99931 * 6 4 2 27 27 H 1.08998 * 109.47171 * 179.97438 * 6 4 2 28 28 H 1.09000 * 109.47140 * 300.00024 * 6 4 2 29 29 H 1.09001 * 109.46726 * 179.97438 * 7 4 2 30 30 H 1.09002 * 109.46589 * 299.99365 * 7 4 2 31 31 H 1.09002 * 109.47045 * 59.99942 * 8 7 4 32 32 H 1.09000 * 109.47140 * 179.97438 * 8 7 4 33 33 H 1.09000 * 109.46497 * 180.02562 * 9 8 7 34 34 H 1.09002 * 109.47067 * 299.99853 * 9 8 7 35 35 H 0.97004 * 119.99423 * 24.99756 * 12 10 2 36 36 H 0.97000 * 119.99543 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 1 1.6766 -1.7489 -1.2493 6 6 1.5299 0.0000 -2.4985 7 6 3.5700 -0.7218 -1.2490 8 6 4.0795 -1.4433 0.0002 9 6 3.5695 -0.7221 1.2495 10 6 2.0400 -0.7213 1.2492 11 1 1.6767 -0.2075 2.1392 12 7 1.5517 -2.1025 1.2492 13 6 1.4229 -2.7718 2.4119 14 8 1.7127 -2.2289 3.4617 15 6 0.9356 -4.1520 2.4119 16 1 0.6788 -4.6340 1.4801 17 6 0.8023 -4.8477 3.6200 18 7 1.1135 -4.2646 4.7473 19 14 0.1797 -6.6088 3.6201 20 1 1.3297 -7.5404 3.4974 21 1 -0.5427 -6.8785 4.8892 22 1 -0.7429 -6.8076 2.4735 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3635 0.5138 -0.8899 26 1 1.8932 1.0277 -2.4985 27 1 1.8936 -0.5136 -3.3885 28 1 0.4399 0.0000 -2.4985 29 1 3.9332 -1.2360 -2.1388 30 1 3.9336 0.3058 -1.2488 31 1 3.7158 -2.4709 0.0000 32 1 5.1695 -1.4441 0.0002 33 1 3.9329 -1.2360 2.1394 34 1 3.9332 0.3055 1.2497 35 1 1.3210 -2.5353 0.4123 36 1 1.0216 -4.7466 5.5841 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019428285.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:46 Heat of formation + Delta-G solvation = -93.696349 kcal Electronic energy + Delta-G solvation = -16424.302069 eV Core-core repulsion = 13905.981362 eV Total energy + Delta-G solvation = -2518.320707 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.86893 -38.47315 -34.86876 -34.18197 -33.83504 -31.55161 -28.56073 -27.65339 -26.28274 -22.90921 -22.34764 -21.58497 -19.62134 -19.24649 -17.45634 -16.47734 -16.14427 -15.85555 -15.47203 -15.03836 -14.81164 -14.31707 -14.13264 -13.97466 -13.30474 -13.01302 -12.84526 -12.78477 -12.67064 -12.62220 -12.55980 -12.26261 -12.19202 -12.00291 -11.67429 -11.26898 -10.96609 -10.86680 -10.75803 -9.79548 -9.32068 -8.26878 -6.82925 1.38376 1.40315 1.55110 2.24669 2.50811 3.22450 3.64828 3.78179 3.85315 3.91783 4.19814 4.28709 4.50386 4.54578 4.62500 4.69592 4.73901 4.85499 4.96147 4.97063 5.08148 5.10637 5.15210 5.23110 5.30465 5.32457 5.36892 5.46952 5.52134 5.59354 5.66506 5.92406 6.28663 6.42148 6.88916 7.63505 8.54876 8.72454 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.036626 B = 0.007524 C = 0.007317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.297678 B = 3720.528015 C = 3825.919347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.080 4.080 3 H 0.090 0.910 4 C -0.085 4.085 5 H 0.057 0.943 6 C -0.140 4.140 7 C -0.102 4.102 8 C -0.111 4.111 9 C -0.124 4.124 10 C 0.156 3.844 11 H 0.031 0.969 12 N -0.738 5.738 13 C 0.542 3.458 14 O -0.634 6.634 15 C -0.576 4.576 16 H 0.083 0.917 17 C 0.029 3.971 18 N -0.824 5.824 19 Si 0.995 3.005 20 H -0.262 1.262 21 H -0.273 1.273 22 H -0.249 1.249 23 H 0.042 0.958 24 H 0.036 0.964 25 H 0.082 0.918 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.043 0.957 32 H 0.065 0.935 33 H 0.018 0.982 34 H 0.077 0.923 35 H 0.389 0.611 36 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.263 5.609 -14.841 15.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.099 4.099 3 H 0.108 0.892 4 C -0.104 4.104 5 H 0.076 0.924 6 C -0.198 4.198 7 C -0.140 4.140 8 C -0.149 4.149 9 C -0.163 4.163 10 C 0.050 3.950 11 H 0.050 0.950 12 N -0.392 5.392 13 C 0.345 3.655 14 O -0.521 6.521 15 C -0.613 4.613 16 H 0.101 0.899 17 C -0.186 4.186 18 N -0.454 5.454 19 Si 0.815 3.185 20 H -0.187 1.187 21 H -0.198 1.198 22 H -0.172 1.172 23 H 0.061 0.939 24 H 0.055 0.945 25 H 0.101 0.899 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.062 0.938 32 H 0.083 0.917 33 H 0.037 0.963 34 H 0.096 0.904 35 H 0.224 0.776 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.484 6.029 -13.914 15.236 hybrid contribution -0.253 -0.950 0.538 1.121 sum 1.231 5.079 -13.376 14.360 Atomic orbital electron populations 1.21817 0.95042 1.01492 1.01602 1.21351 0.95892 0.99551 0.93112 0.89180 1.21133 0.95637 0.99234 0.94414 0.92427 1.21827 1.01291 1.00579 0.96057 1.21545 0.94681 1.01050 0.96686 1.21422 0.99957 0.99031 0.94495 1.21835 0.96265 1.00590 0.97629 1.20632 0.93087 0.83915 0.97374 0.95040 1.45797 1.71525 1.13469 1.08444 1.18519 0.77423 0.87351 0.82187 1.90540 1.57030 1.71213 1.33335 1.21433 1.47441 0.97559 0.94831 0.89865 1.26949 0.92854 1.04641 0.94162 1.70205 1.37025 1.38917 0.99232 0.85063 0.79035 0.75548 0.78901 1.18675 1.19810 1.17226 0.93879 0.94500 0.89919 0.91787 0.91835 0.92160 0.90597 0.90735 0.93808 0.91660 0.96288 0.90402 0.77604 0.91750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.99 8.68 71.98 0.62 -3.36 16 2 C -0.08 -2.26 2.04 -10.79 -0.02 -2.28 16 3 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 4 C -0.09 -2.01 2.08 -10.79 -0.02 -2.03 16 5 H 0.06 1.52 6.51 -2.39 -0.02 1.51 16 6 C -0.14 -2.44 8.84 71.98 0.64 -1.80 16 7 C -0.10 -2.30 5.20 30.60 0.16 -2.14 16 8 C -0.11 -3.35 5.77 30.59 0.18 -3.18 16 9 C -0.12 -4.57 5.60 30.58 0.17 -4.40 16 10 C 0.16 6.15 2.23 44.98 0.10 6.25 16 11 H 0.03 1.49 7.58 -2.39 -0.02 1.47 16 12 N -0.74 -33.67 3.53 -446.91 -1.58 -35.25 16 13 C 0.54 32.11 7.71 86.36 0.67 32.78 16 14 O -0.63 -43.57 14.68 -4.30 -0.06 -43.64 16 15 C -0.58 -33.47 9.54 24.83 0.24 -33.23 16 16 H 0.08 4.36 7.85 -2.91 -0.02 4.34 16 17 C 0.03 1.63 5.50 85.30 0.47 2.10 16 18 N -0.82 -51.83 11.83 21.84 0.26 -51.57 16 19 Si 1.00 42.00 29.56 68.60 2.03 44.03 16 20 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 21 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 22 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 23 H 0.04 1.35 7.44 -2.39 -0.02 1.33 16 24 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.08 1.77 6.43 -2.39 -0.02 1.76 16 26 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.06 1.02 6.43 -2.39 -0.02 1.01 16 29 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.04 1.51 7.60 -2.39 -0.02 1.50 16 32 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.39 15.78 6.63 -92.70 -0.61 15.16 16 36 H 0.27 15.55 8.29 -92.71 -0.77 14.78 16 Total: -1.00 -75.38 282.15 4.28 -71.10 By element: Atomic # 1 Polarization: 26.18 SS G_CDS: 0.44 Total: 26.62 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: 3.20 Total: -11.29 kcal Atomic # 7 Polarization: -85.50 SS G_CDS: -1.32 Total: -86.82 kcal Atomic # 8 Polarization: -43.57 SS G_CDS: -0.06 Total: -43.64 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -75.38 4.28 -71.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019428285.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.600 kcal (2) G-P(sol) polarization free energy of solvation -75.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds