Wall clock time and date at job start Mon Mar 30 2020 02:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47261 * 2 1 4 4 C 1.50701 * 109.47482 * 180.02562 * 3 2 1 5 5 O 1.21281 * 119.99846 * 0.02562 * 4 3 2 6 6 N 1.34774 * 119.99957 * 179.97438 * 4 3 2 7 7 C 1.47419 * 125.65231 * 355.10350 * 6 4 3 8 8 C 1.54910 * 104.83518 * 155.83703 * 7 6 4 9 9 C 1.55151 * 101.58136 * 37.01050 * 8 7 6 10 10 C 1.47023 * 125.64648 * 174.79961 * 6 4 3 11 11 H 1.09003 * 109.87855 * 300.51180 * 10 6 4 12 12 C 1.52995 * 109.88679 * 61.67335 * 10 6 4 13 13 C 1.50698 * 109.47487 * 185.37798 * 12 10 6 14 14 H 1.08003 * 119.99665 * 5.00138 * 13 12 10 15 15 C 1.37878 * 120.00193 * 185.00455 * 13 12 10 16 16 N 1.31511 * 120.00006 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99936 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47259 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47098 * 120.00155 * 17 15 13 20 20 H 1.48502 * 109.47475 * 240.00251 * 17 15 13 21 21 H 1.09007 * 109.46562 * 299.99345 * 1 2 3 22 22 H 1.09000 * 109.46843 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47353 * 59.99498 * 1 2 3 24 24 H 1.09002 * 109.47687 * 120.00474 * 2 1 3 25 25 H 1.09007 * 109.47039 * 240.00421 * 2 1 3 26 26 H 1.09002 * 109.47157 * 300.00799 * 3 2 1 27 27 H 1.09007 * 109.47274 * 60.00194 * 3 2 1 28 28 H 1.09006 * 110.37076 * 274.67484 * 7 6 4 29 29 H 1.09006 * 110.36737 * 36.99410 * 7 6 4 30 30 H 1.08999 * 111.00760 * 155.08857 * 8 7 6 31 31 H 1.08999 * 111.00089 * 278.93563 * 8 7 6 32 32 H 1.08988 * 110.72475 * 82.86425 * 9 8 7 33 33 H 1.09005 * 110.72021 * 205.96629 * 9 8 7 34 34 H 1.09000 * 109.47568 * 305.38119 * 12 10 6 35 35 H 1.09001 * 109.47121 * 65.37890 * 12 10 6 36 36 H 0.97000 * 120.00294 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 8 4.1534 0.3922 -0.0015 6 7 4.2208 2.6097 -0.0013 7 6 3.6167 3.9506 -0.1037 8 6 4.6514 4.9024 0.5468 9 6 5.9905 4.2684 0.0865 10 6 5.6797 2.7569 0.1064 11 1 6.0287 2.3170 1.0406 12 6 6.3608 2.0728 -1.0806 13 6 7.8556 2.1139 -0.8941 14 1 8.2752 2.5083 0.0196 15 6 8.6877 1.6481 -1.8900 16 7 8.1768 1.1684 -3.0028 17 14 10.5406 1.6998 -1.6591 18 1 10.8579 2.2814 -0.3300 19 1 11.0881 0.3218 -1.7392 20 1 11.1491 2.5369 -2.7242 21 1 -0.3633 0.5138 0.8901 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 -0.8899 24 1 1.8934 -0.5139 0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 1.6766 1.9564 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 3.4604 4.2175 -1.1489 29 1 2.6740 3.9846 0.4425 30 1 4.5462 5.9164 0.1609 31 1 4.5657 4.8888 1.6333 32 1 6.2484 4.5995 -0.9193 33 1 6.7911 4.5070 0.7867 34 1 6.0306 1.0357 -1.1407 35 1 6.0951 2.5926 -2.0010 36 1 8.7622 0.8411 -3.7036 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084454985.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:49 Heat of formation + Delta-G solvation = -81.948553 kcal Electronic energy + Delta-G solvation = -15908.474903 eV Core-core repulsion = 13390.663619 eV Total energy + Delta-G solvation = -2517.811284 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.09137 -38.56602 -35.43472 -35.11138 -32.72219 -31.99363 -28.78567 -27.84534 -25.19751 -23.66211 -22.53556 -21.45384 -19.73726 -18.67021 -17.85005 -17.19703 -16.60459 -16.48777 -15.65409 -14.97606 -14.69407 -14.45008 -14.27941 -13.91139 -13.70242 -13.55423 -13.03510 -12.86908 -12.83048 -12.55118 -12.51460 -12.18044 -12.06224 -11.84835 -11.64025 -11.53096 -11.39475 -11.29191 -10.70842 -10.49216 -9.47208 -8.21626 -6.33359 1.36132 1.38565 1.51420 1.74998 2.17648 2.40941 3.11542 3.61187 3.78668 3.98402 4.06691 4.09472 4.17754 4.40437 4.55172 4.61716 4.68260 4.72020 4.77078 4.89840 4.92142 5.03537 5.12760 5.22984 5.23861 5.27881 5.29296 5.45129 5.48589 5.51187 5.67682 5.88185 6.18173 6.74110 6.84815 7.33263 7.35946 8.91477 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.030429 B = 0.007175 C = 0.006098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.961927 B = 3901.443714 C = 4590.727022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.112 4.112 3 C -0.120 4.120 4 C 0.502 3.498 5 O -0.596 6.596 6 N -0.622 5.622 7 C 0.093 3.907 8 C -0.120 4.120 9 C -0.110 4.110 10 C 0.140 3.860 11 H 0.040 0.960 12 C 0.028 3.972 13 C -0.530 4.530 14 H 0.064 0.936 15 C -0.005 4.005 16 N -0.938 5.938 17 Si 0.970 3.030 18 H -0.257 1.257 19 H -0.283 1.283 20 H -0.273 1.273 21 H 0.072 0.928 22 H 0.058 0.942 23 H 0.065 0.935 24 H 0.050 0.950 25 H 0.040 0.960 26 H 0.111 0.889 27 H 0.124 0.876 28 H 0.069 0.931 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.087 0.913 32 H 0.061 0.939 33 H 0.080 0.920 34 H -0.020 1.020 35 H -0.012 1.012 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.604 8.624 7.621 18.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.150 4.150 3 C -0.159 4.159 4 C 0.292 3.708 5 O -0.477 6.477 6 N -0.355 5.355 7 C -0.028 4.028 8 C -0.157 4.157 9 C -0.149 4.149 10 C 0.036 3.964 11 H 0.058 0.942 12 C -0.010 4.010 13 C -0.569 4.569 14 H 0.082 0.918 15 C -0.202 4.202 16 N -0.579 5.579 17 Si 0.794 3.206 18 H -0.180 1.180 19 H -0.209 1.209 20 H -0.198 1.198 21 H 0.091 0.909 22 H 0.078 0.922 23 H 0.084 0.916 24 H 0.069 0.931 25 H 0.059 0.941 26 H 0.129 0.871 27 H 0.142 0.858 28 H 0.087 0.913 29 H 0.130 0.870 30 H 0.129 0.871 31 H 0.106 0.894 32 H 0.080 0.920 33 H 0.098 0.902 34 H -0.001 1.001 35 H 0.006 0.994 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.306 7.954 7.469 17.992 hybrid contribution 1.417 -0.704 -0.492 1.657 sum -12.889 7.250 6.977 16.352 Atomic orbital electron populations 1.21720 0.92532 1.02517 1.03032 1.21284 0.97475 0.94808 1.01479 1.21726 0.87594 1.00238 1.06339 1.21514 0.92054 0.81863 0.75329 1.90700 1.72005 1.32971 1.52040 1.48933 1.07618 1.07234 1.71714 1.22632 0.98296 0.80214 1.01671 1.22826 0.92047 0.99336 1.01514 1.22482 0.98989 0.91344 1.02057 1.21597 0.79715 0.97729 0.97313 0.94212 1.19217 0.94911 0.94165 0.92700 1.21551 0.92158 1.40820 1.02360 0.91782 1.26059 1.04654 0.94677 0.94779 1.70156 1.37044 1.43040 1.07644 0.85324 0.78560 0.77793 0.78905 1.18020 1.20944 1.19807 0.90934 0.92246 0.91581 0.93084 0.94130 0.87105 0.85798 0.91258 0.86967 0.87112 0.89403 0.92017 0.90180 1.00145 0.99369 0.92910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.91 71.98 0.71 -1.69 16 2 C -0.11 -2.94 5.22 30.59 0.16 -2.78 16 3 C -0.12 -2.98 4.63 29.85 0.14 -2.84 16 4 C 0.50 19.75 7.67 87.66 0.67 20.42 16 5 O -0.60 -31.01 14.77 -3.03 -0.04 -31.06 16 6 N -0.62 -23.14 3.07 -788.07 -2.42 -25.56 16 7 C 0.09 2.24 6.74 86.86 0.59 2.82 16 8 C -0.12 -2.65 7.08 31.98 0.23 -2.43 16 9 C -0.11 -3.81 6.02 31.78 0.19 -3.62 16 10 C 0.14 6.26 2.87 45.34 0.13 6.39 16 11 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 12 C 0.03 1.63 4.45 29.85 0.13 1.77 16 13 C -0.53 -31.93 8.66 25.60 0.22 -31.71 16 14 H 0.06 3.64 7.75 -2.91 -0.02 3.62 16 15 C 0.00 -0.28 5.46 84.66 0.46 0.18 16 16 N -0.94 -61.13 13.29 21.45 0.28 -60.85 16 17 Si 0.97 46.32 29.54 68.60 2.03 48.35 16 18 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 19 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 20 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 21 H 0.07 0.97 8.14 -2.38 -0.02 0.96 16 22 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 23 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.05 1.48 8.10 -2.39 -0.02 1.46 16 25 H 0.04 1.28 8.10 -2.38 -0.02 1.26 16 26 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 27 H 0.12 2.18 7.95 -2.38 -0.02 2.16 16 28 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 29 H 0.11 1.74 7.47 -2.38 -0.02 1.73 16 30 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.06 2.34 7.77 -2.39 -0.02 2.32 16 33 H 0.08 2.62 8.14 -2.38 -0.02 2.60 16 34 H -0.02 -1.36 6.54 -2.39 -0.02 -1.38 16 35 H -0.01 -0.76 8.01 -2.39 -0.02 -0.78 16 36 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 Total: -1.00 -82.08 293.97 4.51 -77.57 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: 1.02 Total: 5.02 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: 3.63 Total: -13.48 kcal Atomic # 7 Polarization: -84.27 SS G_CDS: -2.13 Total: -86.40 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -0.04 Total: -31.06 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -82.08 4.51 -77.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084454985.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.376 kcal (2) G-P(sol) polarization free energy of solvation -82.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds