Wall clock time and date at job start Mon Mar 30 2020 02:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47018 * 2 1 4 4 H 1.08998 * 109.70614 * 54.99634 * 3 2 1 5 5 C 1.53293 * 109.71206 * 175.58795 * 3 2 1 6 6 N 1.46826 * 109.40298 * 173.52399 * 5 3 2 7 7 C 1.46896 * 111.00413 * 170.24981 * 6 5 3 8 8 C 1.52995 * 109.47566 * 65.85805 * 7 6 5 9 9 C 1.50699 * 109.47466 * 184.83089 * 8 7 6 10 10 H 1.08005 * 119.99929 * 359.97438 * 9 8 7 11 11 C 1.37878 * 120.00391 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99602 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 120.00181 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47000 * 59.99949 * 13 11 9 15 15 H 1.48500 * 109.46898 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.46795 * 299.99739 * 13 11 9 17 17 C 1.46832 * 111.56233 * 294.60828 * 6 5 3 18 18 C 1.53301 * 109.39839 * 65.38729 * 17 6 5 19 19 C 1.51441 * 109.70792 * 294.41484 * 3 2 1 20 20 O 1.20758 * 121.10964 * 11.21791 * 19 3 2 21 21 H 1.08997 * 109.47544 * 60.00068 * 1 2 3 22 22 H 1.09006 * 109.46764 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47060 * 299.99450 * 1 2 3 24 24 H 1.08997 * 109.47237 * 239.99785 * 2 1 3 25 25 H 1.09000 * 109.47278 * 119.99476 * 2 1 3 26 26 H 1.09006 * 109.48255 * 293.50089 * 5 3 2 27 27 H 1.09003 * 109.48497 * 53.52598 * 5 3 2 28 28 H 1.08998 * 109.47433 * 185.86036 * 7 6 5 29 29 H 1.09001 * 109.46726 * 305.85875 * 7 6 5 30 30 H 1.09005 * 109.47111 * 304.82613 * 8 7 6 31 31 H 1.08999 * 109.47533 * 64.82633 * 8 7 6 32 32 H 0.97000 * 119.99454 * 180.02562 * 12 11 9 33 33 H 1.08995 * 109.48361 * 185.36166 * 17 6 5 34 34 H 1.08998 * 109.48737 * 305.41283 * 17 6 5 35 35 H 1.09002 * 109.70882 * 65.88919 * 18 17 6 36 36 H 1.08996 * 109.71466 * 186.47520 * 18 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6075 1.9852 0.8405 5 6 3.5689 1.4504 0.1110 6 7 4.0622 2.8245 -0.0451 7 6 5.4914 2.9112 0.2827 8 6 6.2991 2.1117 -0.7416 9 6 7.7514 2.1019 -0.3392 10 1 8.0668 2.6149 0.5573 11 6 8.6776 1.4388 -1.1160 12 7 8.2935 0.8144 -2.2080 13 14 10.4778 1.4272 -0.6176 14 1 10.6168 0.7992 0.7209 15 1 11.2617 0.6511 -1.6118 16 1 10.9859 2.8216 -0.5653 17 6 3.7994 3.3422 -1.3938 18 6 2.2861 3.4627 -1.6070 19 6 1.6546 2.1204 -1.2982 20 8 0.8716 1.6077 -2.0613 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5137 0.8900 24 1 1.8933 -0.5138 -0.8899 25 1 1.8934 -0.5137 0.8900 26 1 3.8644 1.0668 1.0876 27 1 3.9934 0.8204 -0.6707 28 1 5.8068 3.9543 0.2599 29 1 5.6612 2.5020 1.2786 30 1 5.9258 1.0883 -0.7799 31 1 6.1975 2.5725 -1.7242 32 1 8.9451 0.3476 -2.7543 33 1 4.2611 4.3235 -1.5028 34 1 4.2174 2.6592 -2.1333 35 1 1.8800 4.2222 -0.9388 36 1 2.0812 3.7364 -2.6420 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229749183.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:28 Heat of formation + Delta-G solvation = -55.187033 kcal Electronic energy + Delta-G solvation = -15956.441033 eV Core-core repulsion = 13439.790216 eV Total energy + Delta-G solvation = -2516.650818 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.06390 -37.44202 -34.45629 -33.18921 -31.53047 -29.61556 -28.18421 -24.54454 -23.73452 -22.69031 -21.79482 -19.99189 -18.52480 -16.52030 -16.08300 -15.67834 -14.98123 -14.59984 -14.40520 -14.17626 -13.61914 -13.28183 -12.99621 -12.63358 -12.34146 -12.09053 -11.85785 -11.51526 -11.40127 -11.15957 -10.93102 -10.86387 -10.81800 -10.71690 -10.44089 -9.93936 -9.79626 -9.21484 -9.04586 -8.40743 -7.66957 -6.06458 -4.10035 2.11911 3.29372 3.34277 3.36292 4.15649 4.34175 4.43619 4.88468 5.01781 5.13821 5.27688 5.30029 5.39274 5.49222 5.56113 5.72090 5.80387 5.89527 5.96289 6.07526 6.10069 6.15369 6.22090 6.30353 6.36944 6.44070 6.58644 6.81327 7.36978 7.39386 7.58706 7.70527 7.74240 7.92950 8.34828 8.96819 9.54772 11.04584 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.041385 B = 0.006040 C = 0.005821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.414593 B = 4634.776772 C = 4809.358951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.110 4.110 3 C -0.133 4.133 4 H 0.107 0.893 5 C 0.064 3.936 6 N -0.546 5.546 7 C 0.058 3.942 8 C -0.011 4.011 9 C -0.522 4.522 10 H 0.056 0.944 11 C 0.058 3.942 12 N -0.895 5.895 13 Si 0.893 3.107 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.276 1.276 17 C 0.059 3.941 18 C -0.165 4.165 19 C 0.368 3.632 20 O -0.460 6.460 21 H 0.073 0.927 22 H 0.050 0.950 23 H 0.047 0.953 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.082 0.918 27 H 0.047 0.953 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.017 0.983 31 H 0.017 0.983 32 H 0.262 0.738 33 H 0.083 0.917 34 H 0.048 0.952 35 H 0.101 0.899 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.097 2.497 4.199 13.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.148 4.148 3 C -0.152 4.152 4 H 0.125 0.875 5 C -0.064 4.064 6 N -0.269 5.269 7 C -0.068 4.068 8 C -0.049 4.049 9 C -0.561 4.561 10 H 0.074 0.926 11 C -0.143 4.143 12 N -0.534 5.534 13 Si 0.721 3.279 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.202 1.202 17 C -0.069 4.069 18 C -0.203 4.203 19 C 0.244 3.756 20 O -0.334 6.334 21 H 0.092 0.908 22 H 0.069 0.931 23 H 0.066 0.934 24 H 0.084 0.916 25 H 0.086 0.914 26 H 0.101 0.899 27 H 0.066 0.934 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.035 0.965 31 H 0.036 0.964 32 H 0.071 0.929 33 H 0.101 0.899 34 H 0.066 0.934 35 H 0.119 0.881 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.691 2.420 3.977 13.518 hybrid contribution 1.653 -0.527 -0.325 1.765 sum -11.038 1.892 3.652 11.780 Atomic orbital electron populations 1.21934 0.95572 1.01629 1.02559 1.21375 0.96275 0.94723 1.02475 1.22026 0.97860 0.97389 0.97924 0.87500 1.22058 0.91192 0.90641 1.02557 1.62189 1.19205 1.20203 1.25299 1.22347 0.83559 1.00849 1.00055 1.19686 0.95154 0.95477 0.94562 1.21107 0.92522 1.33186 1.09241 0.92569 1.25027 0.99058 0.95312 0.94940 1.69954 1.34517 1.34300 1.14630 0.86640 0.84836 0.78155 0.78281 1.20193 1.21296 1.20172 1.21996 0.92664 1.01410 0.90873 1.22436 0.97584 0.96920 1.03384 1.24991 0.77164 0.87218 0.86227 1.90304 1.28753 1.65291 1.49039 0.90802 0.93082 0.93367 0.91649 0.91382 0.89934 0.93434 0.91680 0.91632 0.96451 0.96430 0.92884 0.89858 0.93392 0.88085 0.89471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 9.68 37.16 0.36 -1.54 16 2 C -0.11 -1.42 5.12 -26.73 -0.14 -1.56 16 3 C -0.13 -1.79 2.63 -91.26 -0.24 -2.03 16 4 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 5 C 0.06 1.02 4.28 -3.71 -0.02 1.00 16 6 N -0.55 -9.10 4.77 -234.37 -1.12 -10.22 16 7 C 0.06 1.15 5.26 -3.83 -0.02 1.13 16 8 C -0.01 -0.26 4.26 -27.89 -0.12 -0.38 16 9 C -0.52 -14.34 9.11 -34.44 -0.31 -14.65 16 10 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 11 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 12 N -0.90 -26.59 13.29 55.43 0.74 -25.86 16 13 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 14 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 15 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 17 C 0.06 0.94 4.77 -3.71 -0.02 0.92 16 18 C -0.17 -2.19 6.35 -27.32 -0.17 -2.36 16 19 C 0.37 5.42 6.49 -28.27 -0.18 5.23 16 20 O -0.46 -7.73 14.72 6.00 0.09 -7.64 16 21 H 0.07 1.00 5.70 -51.93 -0.30 0.71 16 22 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 24 H 0.06 0.93 8.13 -51.93 -0.42 0.51 16 25 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.08 1.26 7.99 -51.93 -0.42 0.84 16 27 H 0.05 0.87 6.81 -51.93 -0.35 0.52 16 28 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.07 1.27 8.02 -51.93 -0.42 0.85 16 30 H 0.02 0.46 6.55 -51.93 -0.34 0.12 16 31 H 0.02 0.46 6.89 -51.93 -0.36 0.10 16 32 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.08 1.26 8.08 -51.93 -0.42 0.84 16 34 H 0.05 0.88 6.93 -51.93 -0.36 0.52 16 35 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 285.17 15.07 4.30 4.30 Total: -1.00 -29.73 285.17 -7.86 -37.59 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -5.88 Total: -1.76 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: -0.96 Total: -12.70 kcal Atomic # 7 Polarization: -35.70 SS G_CDS: -0.38 Total: -36.08 kcal Atomic # 8 Polarization: -7.73 SS G_CDS: 0.09 Total: -7.64 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.73 -7.86 -37.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229749183.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.600 kcal (2) G-P(sol) polarization free energy of solvation -29.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds