Wall clock time and date at job start Mon Mar 30 2020 02:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47018 * 2 1 4 4 H 1.08998 * 109.70614 * 54.99634 * 3 2 1 5 5 C 1.53293 * 109.71206 * 175.58795 * 3 2 1 6 6 N 1.46826 * 109.40298 * 173.52399 * 5 3 2 7 7 C 1.46896 * 111.00413 * 170.24981 * 6 5 3 8 8 C 1.52995 * 109.47566 * 65.85805 * 7 6 5 9 9 C 1.50699 * 109.47466 * 184.83089 * 8 7 6 10 10 H 1.08005 * 119.99929 * 359.97438 * 9 8 7 11 11 C 1.37878 * 120.00391 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99602 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 120.00181 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47000 * 59.99949 * 13 11 9 15 15 H 1.48500 * 109.46898 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.46795 * 299.99739 * 13 11 9 17 17 C 1.46832 * 111.56233 * 294.60828 * 6 5 3 18 18 C 1.53301 * 109.39839 * 65.38729 * 17 6 5 19 19 C 1.51441 * 109.70792 * 294.41484 * 3 2 1 20 20 O 1.20758 * 121.10964 * 11.21791 * 19 3 2 21 21 H 1.08997 * 109.47544 * 60.00068 * 1 2 3 22 22 H 1.09006 * 109.46764 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47060 * 299.99450 * 1 2 3 24 24 H 1.08997 * 109.47237 * 239.99785 * 2 1 3 25 25 H 1.09000 * 109.47278 * 119.99476 * 2 1 3 26 26 H 1.09006 * 109.48255 * 293.50089 * 5 3 2 27 27 H 1.09003 * 109.48497 * 53.52598 * 5 3 2 28 28 H 1.08998 * 109.47433 * 185.86036 * 7 6 5 29 29 H 1.09001 * 109.46726 * 305.85875 * 7 6 5 30 30 H 1.09005 * 109.47111 * 304.82613 * 8 7 6 31 31 H 1.08999 * 109.47533 * 64.82633 * 8 7 6 32 32 H 0.97000 * 119.99454 * 180.02562 * 12 11 9 33 33 H 1.08995 * 109.48361 * 185.36166 * 17 6 5 34 34 H 1.08998 * 109.48737 * 305.41283 * 17 6 5 35 35 H 1.09002 * 109.70882 * 65.88919 * 18 17 6 36 36 H 1.08996 * 109.71466 * 186.47520 * 18 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6075 1.9852 0.8405 5 6 3.5689 1.4504 0.1110 6 7 4.0622 2.8245 -0.0451 7 6 5.4914 2.9112 0.2827 8 6 6.2991 2.1117 -0.7416 9 6 7.7514 2.1019 -0.3392 10 1 8.0668 2.6149 0.5573 11 6 8.6776 1.4388 -1.1160 12 7 8.2935 0.8144 -2.2080 13 14 10.4778 1.4272 -0.6176 14 1 10.6168 0.7992 0.7209 15 1 11.2617 0.6511 -1.6118 16 1 10.9859 2.8216 -0.5653 17 6 3.7994 3.3422 -1.3938 18 6 2.2861 3.4627 -1.6070 19 6 1.6546 2.1204 -1.2982 20 8 0.8716 1.6077 -2.0613 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5137 0.8900 24 1 1.8933 -0.5138 -0.8899 25 1 1.8934 -0.5137 0.8900 26 1 3.8644 1.0668 1.0876 27 1 3.9934 0.8204 -0.6707 28 1 5.8068 3.9543 0.2599 29 1 5.6612 2.5020 1.2786 30 1 5.9258 1.0883 -0.7799 31 1 6.1975 2.5725 -1.7242 32 1 8.9451 0.3476 -2.7543 33 1 4.2611 4.3235 -1.5028 34 1 4.2174 2.6592 -2.1333 35 1 1.8800 4.2222 -0.9388 36 1 2.0812 3.7364 -2.6420 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229749183.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:28 Heat of formation + Delta-G solvation = -73.928381 kcal Electronic energy + Delta-G solvation = -15957.253719 eV Core-core repulsion = 13439.790216 eV Total energy + Delta-G solvation = -2517.463503 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.29810 -38.84781 -35.74842 -35.01680 -33.08127 -30.94023 -29.77627 -26.33953 -24.90633 -24.25399 -23.09899 -21.40305 -19.81614 -18.57273 -17.27458 -16.97310 -16.56647 -16.29807 -15.71361 -15.55990 -14.92457 -14.69649 -14.38139 -14.15231 -13.89113 -13.40327 -13.14218 -13.08262 -12.86235 -12.72920 -12.46911 -12.36168 -12.06260 -11.88276 -11.85983 -11.74836 -11.50048 -11.24085 -10.55426 -10.21509 -9.21364 -8.21466 -6.33555 0.93894 1.40065 1.42567 1.50457 2.39624 2.91010 3.11874 3.12620 3.74419 3.86663 3.95664 4.14067 4.28805 4.35520 4.41415 4.49979 4.61455 4.68631 4.80428 4.82910 4.86576 4.93395 4.97574 5.01954 5.10229 5.13792 5.29878 5.44901 5.47684 5.56116 5.71719 5.96355 6.15423 6.29541 6.53182 6.84970 7.36523 8.89409 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.041385 B = 0.006040 C = 0.005821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.414593 B = 4634.776772 C = 4809.358951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.111 4.111 3 C -0.124 4.124 4 H 0.135 0.865 5 C 0.066 3.934 6 N -0.530 5.530 7 C 0.072 3.928 8 C -0.002 4.002 9 C -0.540 4.540 10 H 0.066 0.934 11 C 0.000 4.000 12 N -0.936 5.936 13 Si 0.964 3.036 14 H -0.266 1.266 15 H -0.287 1.287 16 H -0.265 1.265 17 C 0.059 3.941 18 C -0.155 4.155 19 C 0.363 3.637 20 O -0.483 6.483 21 H 0.055 0.945 22 H 0.060 0.940 23 H 0.067 0.933 24 H 0.041 0.959 25 H 0.084 0.916 26 H 0.092 0.908 27 H 0.012 0.988 28 H 0.074 0.926 29 H 0.072 0.928 30 H -0.011 1.011 31 H -0.010 1.010 32 H 0.262 0.738 33 H 0.093 0.907 34 H 0.012 0.988 35 H 0.132 0.868 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.399 3.521 6.014 14.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.149 4.149 3 C -0.143 4.143 4 H 0.152 0.848 5 C -0.063 4.063 6 N -0.253 5.253 7 C -0.055 4.055 8 C -0.041 4.041 9 C -0.578 4.578 10 H 0.084 0.916 11 C -0.198 4.198 12 N -0.577 5.577 13 Si 0.789 3.211 14 H -0.190 1.190 15 H -0.213 1.213 16 H -0.190 1.190 17 C -0.070 4.070 18 C -0.193 4.193 19 C 0.241 3.759 20 O -0.359 6.359 21 H 0.074 0.926 22 H 0.079 0.921 23 H 0.086 0.914 24 H 0.060 0.940 25 H 0.102 0.898 26 H 0.111 0.889 27 H 0.030 0.970 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.007 0.993 31 H 0.009 0.991 32 H 0.071 0.929 33 H 0.112 0.888 34 H 0.030 0.970 35 H 0.150 0.850 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -13.005 3.458 5.808 14.657 hybrid contribution 1.726 -0.863 -0.918 2.137 sum -11.279 2.595 4.889 12.564 Atomic orbital electron populations 1.21875 0.94431 1.02326 1.02537 1.21395 0.97214 0.94200 1.02119 1.22007 0.95761 0.98170 0.98317 0.84758 1.22075 0.92892 0.89536 1.01784 1.62262 1.16939 1.20493 1.25571 1.22124 0.84545 1.00299 0.98557 1.19571 0.95147 0.94517 0.94846 1.21618 0.93920 1.32834 1.09455 0.91588 1.25988 1.04104 0.94892 0.94833 1.70107 1.36122 1.35427 1.16012 0.85508 0.78827 0.78642 0.78139 1.19031 1.21300 1.18959 1.22023 0.94707 1.00871 0.89358 1.22404 0.95100 0.96962 1.04812 1.25349 0.76609 0.87660 0.86313 1.90310 1.30060 1.65860 1.49675 0.92636 0.92131 0.91440 0.94033 0.89775 0.88934 0.96989 0.90746 0.90908 0.99252 0.99127 0.92934 0.88827 0.97011 0.85016 0.88594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 9.68 71.98 0.70 -2.71 16 2 C -0.11 -2.75 5.12 30.59 0.16 -2.60 16 3 C -0.12 -3.15 2.63 -11.21 -0.03 -3.18 16 4 H 0.13 2.77 8.14 -2.39 -0.02 2.75 16 5 C 0.07 2.06 4.28 86.42 0.37 2.43 16 6 N -0.53 -17.16 4.77 -895.41 -4.27 -21.43 16 7 C 0.07 2.78 5.26 86.30 0.45 3.24 16 8 C 0.00 -0.13 4.26 29.85 0.13 0.00 16 9 C -0.54 -29.81 9.11 25.60 0.23 -29.58 16 10 H 0.07 3.43 7.74 -2.91 -0.02 3.41 16 11 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 12 N -0.94 -57.07 13.29 21.45 0.28 -56.78 16 13 Si 0.96 43.63 29.54 68.60 2.03 45.65 16 14 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 15 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 16 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 17 C 0.06 1.85 4.77 86.42 0.41 2.26 16 18 C -0.16 -3.84 6.35 30.21 0.19 -3.65 16 19 C 0.36 10.32 6.49 29.60 0.19 10.52 16 20 O -0.48 -16.10 14.72 -1.44 -0.02 -16.12 16 21 H 0.05 1.45 5.70 -2.39 -0.01 1.44 16 22 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 23 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.04 1.21 8.13 -2.39 -0.02 1.19 16 25 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.09 2.71 7.99 -2.38 -0.02 2.69 16 27 H 0.01 0.46 6.81 -2.39 -0.02 0.44 16 28 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 29 H 0.07 2.71 8.02 -2.39 -0.02 2.69 16 30 H -0.01 -0.61 6.55 -2.38 -0.02 -0.62 16 31 H -0.01 -0.53 6.89 -2.39 -0.02 -0.55 16 32 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 33 H 0.09 2.73 8.08 -2.39 -0.02 2.71 16 34 H 0.01 0.45 6.93 -2.39 -0.02 0.43 16 35 H 0.13 2.52 8.14 -2.39 -0.02 2.50 16 36 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -64.96 285.17 2.32 -62.64 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: 1.04 Total: 8.89 kcal Atomic # 6 Polarization: -26.11 SS G_CDS: 3.27 Total: -22.84 kcal Atomic # 7 Polarization: -74.23 SS G_CDS: -3.99 Total: -78.22 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -0.02 Total: -16.12 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Total: -64.96 2.32 -62.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229749183.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.292 kcal (2) G-P(sol) polarization free energy of solvation -64.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds