Wall clock time and date at job start Mon Mar 30 2020 03:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47021 * 2 1 4 4 N 1.46507 * 109.46840 * 180.02562 * 3 2 1 5 5 C 1.37099 * 119.99716 * 264.53059 * 4 3 2 6 6 H 1.08006 * 119.99328 * 146.01184 * 5 4 3 7 7 C 1.38943 * 120.00033 * 326.02047 * 5 4 3 8 8 N 1.31412 * 120.00404 * 337.80020 * 7 5 4 9 9 Si 1.86806 * 119.99847 * 157.80955 * 7 5 4 10 10 H 1.48496 * 109.47357 * 59.99746 * 9 7 5 11 11 H 1.48495 * 109.47012 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47023 * 299.99350 * 9 7 5 13 13 C 1.34773 * 120.00332 * 84.53531 * 4 3 2 14 14 O 1.21299 * 119.99707 * 0.02562 * 13 4 3 15 15 C 1.50697 * 120.00302 * 179.97438 * 13 4 3 16 16 C 1.52997 * 109.47344 * 179.97438 * 15 13 4 17 17 C 1.53785 * 113.61281 * 85.86860 * 16 15 13 18 18 C 1.54044 * 86.98610 * 140.01919 * 17 16 15 19 19 C 1.53776 * 113.61571 * 183.47236 * 16 15 13 20 20 H 1.09002 * 109.47440 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47484 * 300.00163 * 1 2 3 22 22 H 1.09002 * 109.46964 * 60.00478 * 1 2 3 23 23 H 1.08998 * 109.47127 * 239.99443 * 2 1 3 24 24 H 1.09002 * 109.46964 * 119.99522 * 2 1 3 25 25 H 1.08998 * 109.47625 * 59.99748 * 3 2 1 26 26 H 1.08996 * 109.46746 * 299.99196 * 3 2 1 27 27 H 0.96993 * 120.00168 * 179.97438 * 8 7 5 28 28 H 1.09003 * 109.46484 * 60.00395 * 15 13 4 29 29 H 1.08999 * 109.47531 * 300.00572 * 15 13 4 30 30 H 1.09000 * 112.85152 * 314.67381 * 16 15 13 31 31 H 1.09002 * 113.61459 * 254.61578 * 17 16 15 32 32 H 1.09005 * 113.61095 * 25.51309 * 17 16 15 33 33 H 1.09001 * 113.62302 * 220.01998 * 18 17 16 34 34 H 1.09003 * 113.61169 * 89.11597 * 18 17 16 35 35 H 1.09004 * 113.61439 * 334.48804 * 19 16 15 36 36 H 1.09007 * 113.61445 * 105.30462 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1909 1.5554 1.1811 6 1 5.1326 1.0425 1.3099 7 6 3.6746 2.3296 2.2128 8 7 2.8036 3.2780 1.9502 9 14 4.2186 2.0226 3.9733 10 1 5.6870 2.2174 4.0788 11 1 3.5271 2.9753 4.8784 12 1 3.8746 0.6313 4.3621 13 6 4.1784 1.3315 -1.1627 14 8 3.5715 1.2321 -2.2083 15 6 5.6854 1.3320 -1.1634 16 6 6.1948 1.1941 -2.5995 17 6 6.3037 2.5342 -3.3459 18 6 7.6194 2.0013 -3.9441 19 6 7.7261 1.0989 -2.7034 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 1.6766 1.9564 0.8899 26 1 1.6767 1.9562 -0.8900 27 1 2.4429 3.8182 2.6705 28 1 6.0492 0.4951 -0.5673 29 1 6.0487 2.2670 -0.7368 30 1 5.6702 0.4221 -3.1624 31 1 5.5170 2.6877 -4.0847 32 1 6.4395 3.3915 -2.6864 33 1 8.4067 2.7526 -4.0066 34 1 7.4842 1.4500 -4.8746 35 1 8.2502 1.5645 -1.8687 36 1 8.0873 0.0941 -2.9225 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231289838.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:33 Heat of formation + Delta-G solvation = -34.078254 kcal Electronic energy + Delta-G solvation = -16065.986453 eV Core-core repulsion = 13550.250981 eV Total energy + Delta-G solvation = -2515.735472 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.03052 -37.65035 -34.94660 -32.80196 -31.28456 -29.51260 -25.82633 -25.17450 -24.57934 -22.65420 -20.60262 -19.04104 -18.81987 -16.79419 -15.81024 -15.14494 -14.76182 -14.31712 -13.97212 -13.87117 -13.64932 -12.74260 -12.72176 -12.04733 -11.92534 -11.65465 -11.37812 -11.28247 -11.21750 -10.94378 -10.72497 -10.59231 -10.35733 -10.25077 -10.09814 -9.82409 -9.70871 -9.61531 -9.02482 -8.28692 -7.47419 -6.35543 -4.01308 3.12438 3.21047 3.23191 3.99488 4.13640 4.78557 4.98930 5.06782 5.14476 5.21764 5.41298 5.82649 5.85999 5.91790 6.03270 6.09545 6.13298 6.16889 6.18172 6.35479 6.42797 6.52389 6.57087 6.61698 6.70191 6.72904 6.80979 6.87331 7.05604 7.18670 7.40082 7.53606 7.98159 8.41907 9.11426 9.60755 10.03932 10.65845 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.022340 B = 0.009197 C = 0.007113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.072978 B = 3043.607072 C = 3935.552082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.134 4.134 3 C 0.115 3.885 4 N -0.442 5.442 5 C -0.338 4.338 6 H 0.089 0.911 7 C 0.042 3.958 8 N -0.859 5.859 9 Si 0.912 3.088 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.273 1.273 13 C 0.469 3.531 14 O -0.607 6.607 15 C -0.110 4.110 16 C -0.089 4.089 17 C -0.131 4.131 18 C -0.143 4.143 19 C -0.140 4.140 20 H 0.044 0.956 21 H 0.050 0.950 22 H 0.049 0.951 23 H 0.052 0.948 24 H 0.056 0.944 25 H 0.106 0.894 26 H 0.049 0.951 27 H 0.269 0.731 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.273 -2.964 -2.838 5.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.173 4.173 3 C -0.009 4.009 4 N -0.160 5.160 5 C -0.466 4.466 6 H 0.107 0.893 7 C -0.164 4.164 8 N -0.495 5.495 9 Si 0.738 3.262 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.199 1.199 13 C 0.258 3.742 14 O -0.494 6.494 15 C -0.150 4.150 16 C -0.108 4.108 17 C -0.168 4.168 18 C -0.181 4.181 19 C -0.178 4.178 20 H 0.063 0.937 21 H 0.070 0.930 22 H 0.068 0.932 23 H 0.071 0.929 24 H 0.075 0.925 25 H 0.123 0.877 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.094 0.906 29 H 0.102 0.898 30 H 0.109 0.891 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.847 -2.843 -3.215 5.763 hybrid contribution 0.221 -0.065 1.123 1.147 sum 4.068 -2.908 -2.092 5.420 Atomic orbital electron populations 1.21653 0.96680 1.00344 1.01346 1.21836 0.94637 0.99647 1.01178 1.21417 0.81747 0.94332 1.03403 1.43519 1.04701 1.62698 1.05095 1.19389 1.07357 1.29159 0.90678 0.89331 1.25310 0.97129 0.93599 1.00329 1.69942 1.30199 1.16247 1.33132 0.86247 0.79003 0.78435 0.82492 1.19748 1.20941 1.19867 1.20462 0.89600 0.80629 0.83507 1.90496 1.70549 1.56422 1.31891 1.21366 0.94386 1.03135 0.96097 1.22274 0.94071 0.98411 0.96005 1.22925 0.96665 0.97518 0.99708 1.22852 0.98325 0.99334 0.97579 1.22987 0.97220 0.99441 0.98128 0.93708 0.93043 0.93169 0.92934 0.92513 0.87670 0.93230 0.92046 0.90622 0.89760 0.89060 0.91666 0.90528 0.92125 0.90737 0.90324 0.92113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.91 37.15 0.37 -2.12 16 2 C -0.13 -2.85 6.22 -26.73 -0.17 -3.02 16 3 C 0.11 2.82 4.90 -4.04 -0.02 2.80 16 4 N -0.44 -11.35 2.56 -114.81 -0.29 -11.64 16 5 C -0.34 -8.61 8.70 -14.93 -0.13 -8.74 16 6 H 0.09 2.15 6.97 -52.48 -0.37 1.78 16 7 C 0.04 1.06 4.92 -17.47 -0.09 0.98 16 8 N -0.86 -22.76 11.34 55.50 0.63 -22.13 16 9 Si 0.91 19.40 29.61 -169.99 -5.03 14.37 16 10 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 11 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 12 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 13 C 0.47 11.61 7.60 -10.99 -0.08 11.53 16 14 O -0.61 -16.22 15.46 5.54 0.09 -16.14 16 15 C -0.11 -2.24 4.18 -27.89 -0.12 -2.35 16 16 C -0.09 -1.58 3.11 -89.81 -0.28 -1.86 16 17 C -0.13 -2.18 7.65 -25.78 -0.20 -2.38 16 18 C -0.14 -1.95 8.09 -25.78 -0.21 -2.15 16 19 C -0.14 -1.99 7.64 -25.92 -0.20 -2.19 16 20 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 21 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 22 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 23 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 24 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 25 H 0.11 2.72 5.35 -51.93 -0.28 2.44 16 26 H 0.05 1.27 7.59 -51.93 -0.39 0.88 16 27 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 28 H 0.08 1.46 7.64 -51.93 -0.40 1.06 16 29 H 0.08 1.73 7.83 -51.93 -0.41 1.32 16 30 H 0.09 1.74 7.73 -51.93 -0.40 1.34 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.08 1.28 7.92 -51.93 -0.41 0.87 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 293.93 15.07 4.43 4.43 Total: -1.00 -28.30 293.93 -7.31 -35.61 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -6.01 Total: 5.00 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: -1.12 Total: -9.50 kcal Atomic # 7 Polarization: -34.11 SS G_CDS: 0.34 Total: -33.77 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: 0.09 Total: -16.14 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.03 Total: 14.37 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -28.30 -7.31 -35.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231289838.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.532 kcal (2) G-P(sol) polarization free energy of solvation -28.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds