Wall clock time and date at job start Mon Mar 30 2020 03:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47021 * 2 1 4 4 N 1.46507 * 109.46840 * 180.02562 * 3 2 1 5 5 C 1.37099 * 119.99716 * 264.53059 * 4 3 2 6 6 H 1.08006 * 119.99328 * 146.01184 * 5 4 3 7 7 C 1.38943 * 120.00033 * 326.02047 * 5 4 3 8 8 N 1.31412 * 120.00404 * 337.80020 * 7 5 4 9 9 Si 1.86806 * 119.99847 * 157.80955 * 7 5 4 10 10 H 1.48496 * 109.47357 * 59.99746 * 9 7 5 11 11 H 1.48495 * 109.47012 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47023 * 299.99350 * 9 7 5 13 13 C 1.34773 * 120.00332 * 84.53531 * 4 3 2 14 14 O 1.21299 * 119.99707 * 0.02562 * 13 4 3 15 15 C 1.50697 * 120.00302 * 179.97438 * 13 4 3 16 16 C 1.52997 * 109.47344 * 179.97438 * 15 13 4 17 17 C 1.53785 * 113.61281 * 85.86860 * 16 15 13 18 18 C 1.54044 * 86.98610 * 140.01919 * 17 16 15 19 19 C 1.53776 * 113.61571 * 183.47236 * 16 15 13 20 20 H 1.09002 * 109.47440 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47484 * 300.00163 * 1 2 3 22 22 H 1.09002 * 109.46964 * 60.00478 * 1 2 3 23 23 H 1.08998 * 109.47127 * 239.99443 * 2 1 3 24 24 H 1.09002 * 109.46964 * 119.99522 * 2 1 3 25 25 H 1.08998 * 109.47625 * 59.99748 * 3 2 1 26 26 H 1.08996 * 109.46746 * 299.99196 * 3 2 1 27 27 H 0.96993 * 120.00168 * 179.97438 * 8 7 5 28 28 H 1.09003 * 109.46484 * 60.00395 * 15 13 4 29 29 H 1.08999 * 109.47531 * 300.00572 * 15 13 4 30 30 H 1.09000 * 112.85152 * 314.67381 * 16 15 13 31 31 H 1.09002 * 113.61459 * 254.61578 * 17 16 15 32 32 H 1.09005 * 113.61095 * 25.51309 * 17 16 15 33 33 H 1.09001 * 113.62302 * 220.01998 * 18 17 16 34 34 H 1.09003 * 113.61169 * 89.11597 * 18 17 16 35 35 H 1.09004 * 113.61439 * 334.48804 * 19 16 15 36 36 H 1.09007 * 113.61445 * 105.30462 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1909 1.5554 1.1811 6 1 5.1326 1.0425 1.3099 7 6 3.6746 2.3296 2.2128 8 7 2.8036 3.2780 1.9502 9 14 4.2186 2.0226 3.9733 10 1 5.6870 2.2174 4.0788 11 1 3.5271 2.9753 4.8784 12 1 3.8746 0.6313 4.3621 13 6 4.1784 1.3315 -1.1627 14 8 3.5715 1.2321 -2.2083 15 6 5.6854 1.3320 -1.1634 16 6 6.1948 1.1941 -2.5995 17 6 6.3037 2.5342 -3.3459 18 6 7.6194 2.0013 -3.9441 19 6 7.7261 1.0989 -2.7034 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 1.6766 1.9564 0.8899 26 1 1.6767 1.9562 -0.8900 27 1 2.4429 3.8182 2.6705 28 1 6.0492 0.4951 -0.5673 29 1 6.0487 2.2670 -0.7368 30 1 5.6702 0.4221 -3.1624 31 1 5.5170 2.6877 -4.0847 32 1 6.4395 3.3915 -2.6864 33 1 8.4067 2.7526 -4.0066 34 1 7.4842 1.4500 -4.8746 35 1 8.2502 1.5645 -1.8687 36 1 8.0873 0.0941 -2.9225 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231289838.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:32 Heat of formation + Delta-G solvation = -48.665747 kcal Electronic energy + Delta-G solvation = -16066.619014 eV Core-core repulsion = 13550.250981 eV Total energy + Delta-G solvation = -2516.368033 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.74964 -39.17839 -36.88847 -34.57294 -33.22699 -31.09257 -27.62043 -26.47589 -26.35139 -24.10173 -22.32482 -20.92901 -20.18051 -18.65652 -17.71458 -16.64128 -16.56222 -16.03048 -15.73296 -15.45481 -15.12897 -14.49495 -14.31948 -13.54767 -13.35882 -13.25829 -13.17306 -12.98184 -12.64172 -12.60557 -12.36018 -12.21027 -12.06534 -11.97945 -11.54589 -11.41308 -11.13695 -10.96372 -10.92955 -10.23945 -9.46935 -8.29330 -6.02290 1.43649 1.49467 1.57954 2.07967 2.33417 2.99577 3.11687 3.83063 3.84764 3.93635 4.07094 4.15472 4.28521 4.43781 4.54340 4.67950 4.73520 4.82784 4.87467 4.92487 4.95594 4.97868 5.07359 5.10867 5.16010 5.20140 5.22722 5.35632 5.44396 5.50042 5.57606 5.70272 6.03644 6.44864 7.14420 7.64322 8.08062 8.73170 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.022340 B = 0.009197 C = 0.007113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.072978 B = 3043.607072 C = 3935.552082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.124 4.124 3 C 0.114 3.886 4 N -0.455 5.455 5 C -0.356 4.356 6 H 0.100 0.900 7 C 0.001 3.999 8 N -0.893 5.893 9 Si 0.983 3.017 10 H -0.261 1.261 11 H -0.284 1.284 12 H -0.268 1.268 13 C 0.452 3.548 14 O -0.636 6.636 15 C -0.100 4.100 16 C -0.100 4.100 17 C -0.142 4.142 18 C -0.126 4.126 19 C -0.125 4.125 20 H 0.073 0.927 21 H 0.056 0.944 22 H 0.050 0.950 23 H 0.038 0.962 24 H 0.055 0.945 25 H 0.093 0.907 26 H 0.025 0.975 27 H 0.272 0.728 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.046 0.954 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.740 -3.766 -2.031 7.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.163 4.163 3 C -0.009 4.009 4 N -0.173 5.173 5 C -0.483 4.483 6 H 0.117 0.883 7 C -0.202 4.202 8 N -0.530 5.530 9 Si 0.806 3.194 10 H -0.186 1.186 11 H -0.210 1.210 12 H -0.193 1.193 13 C 0.242 3.758 14 O -0.525 6.525 15 C -0.139 4.139 16 C -0.118 4.118 17 C -0.179 4.179 18 C -0.164 4.164 19 C -0.163 4.163 20 H 0.092 0.908 21 H 0.075 0.925 22 H 0.070 0.930 23 H 0.057 0.943 24 H 0.074 0.926 25 H 0.111 0.889 26 H 0.044 0.956 27 H 0.081 0.919 28 H 0.105 0.895 29 H 0.100 0.900 30 H 0.092 0.908 31 H 0.065 0.935 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.107 0.893 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.322 -3.651 -2.410 6.889 hybrid contribution -0.295 0.228 0.837 0.917 sum 5.027 -3.423 -1.573 6.282 Atomic orbital electron populations 1.21608 0.93618 1.02371 1.01696 1.21718 0.97301 0.96922 1.00323 1.21394 0.81911 0.96200 1.01444 1.43830 1.05151 1.62597 1.05705 1.19749 1.08060 1.29672 0.90830 0.88277 1.26193 0.96993 0.92858 1.04127 1.70050 1.31402 1.17104 1.34437 0.85156 0.79018 0.78225 0.77014 1.18556 1.20962 1.19312 1.21304 0.91578 0.79982 0.82894 1.90460 1.71620 1.57627 1.32746 1.21343 0.91027 1.03303 0.98272 1.22318 0.96873 0.98606 0.94045 1.22981 0.98397 0.96979 0.99556 1.22795 0.96563 0.99356 0.97648 1.22937 0.93774 1.00844 0.98718 0.90811 0.92497 0.93047 0.94287 0.92638 0.88925 0.95621 0.91853 0.89463 0.90036 0.90850 0.93525 0.90997 0.89924 0.89623 0.89310 0.90267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.59 9.91 71.98 0.71 -3.88 16 2 C -0.12 -5.30 6.22 30.59 0.19 -5.11 16 3 C 0.11 5.80 4.90 86.38 0.42 6.22 16 4 N -0.46 -23.87 2.56 -635.53 -1.63 -25.50 16 5 C -0.36 -18.12 8.70 84.04 0.73 -17.39 16 6 H 0.10 4.72 6.97 -2.91 -0.02 4.70 16 7 C 0.00 0.05 4.92 84.92 0.42 0.47 16 8 N -0.89 -47.80 11.34 21.66 0.25 -47.55 16 9 Si 0.98 39.04 29.61 68.60 2.03 41.07 16 10 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 11 H -0.28 -11.23 7.11 99.48 0.71 -10.52 16 12 H -0.27 -10.39 7.11 99.48 0.71 -9.69 16 13 C 0.45 22.96 7.60 87.66 0.67 23.63 16 14 O -0.64 -35.25 15.46 -3.09 -0.05 -35.30 16 15 C -0.10 -4.06 4.18 29.85 0.12 -3.94 16 16 C -0.10 -3.49 3.11 -10.27 -0.03 -3.52 16 17 C -0.14 -4.68 7.65 31.21 0.24 -4.44 16 18 C -0.13 -3.10 8.09 31.21 0.25 -2.85 16 19 C -0.13 -3.23 7.64 31.12 0.24 -2.99 16 20 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 21 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 22 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 23 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 24 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 25 H 0.09 4.93 5.35 -2.39 -0.01 4.92 16 26 H 0.03 1.38 7.59 -2.39 -0.02 1.36 16 27 H 0.27 13.69 8.31 -92.71 -0.77 12.92 16 28 H 0.09 3.29 7.64 -2.39 -0.02 3.27 16 29 H 0.08 3.34 7.83 -2.39 -0.02 3.32 16 30 H 0.07 2.83 7.73 -2.39 -0.02 2.81 16 31 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.07 2.41 7.92 -2.38 -0.02 2.39 16 33 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.09 2.13 8.10 -2.38 -0.02 2.11 16 36 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 Total: -1.00 -61.58 293.93 5.60 -55.98 By element: Atomic # 1 Polarization: 24.08 SS G_CDS: 1.03 Total: 25.11 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: 3.96 Total: -13.81 kcal Atomic # 7 Polarization: -71.67 SS G_CDS: -1.38 Total: -73.05 kcal Atomic # 8 Polarization: -35.25 SS G_CDS: -0.05 Total: -35.30 kcal Atomic # 14 Polarization: 39.04 SS G_CDS: 2.03 Total: 41.07 kcal Total: -61.58 5.60 -55.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231289838.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.312 kcal (2) G-P(sol) polarization free energy of solvation -61.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds