Wall clock time and date at job start Mon Mar 30 2020 03:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.46546 * 2 1 4 4 O 1.21272 * 120.00272 * 0.02562 * 3 2 1 5 5 N 1.34782 * 119.99603 * 180.02562 * 3 2 1 6 6 C 1.46494 * 119.99862 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.47111 * 205.00214 * 6 5 3 8 8 C 1.53005 * 109.46947 * 299.99470 * 7 6 5 9 9 C 1.52992 * 109.47274 * 300.00064 * 8 7 6 10 10 C 1.50700 * 109.47257 * 179.97438 * 9 8 7 11 11 H 1.07999 * 119.99988 * 359.97438 * 10 9 8 12 12 C 1.37885 * 120.00047 * 180.02562 * 10 9 8 13 13 N 1.31518 * 119.99792 * 359.72305 * 12 10 9 14 14 Si 1.86795 * 120.00009 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47088 * 89.99795 * 14 12 10 16 16 H 1.48495 * 109.47293 * 209.99997 * 14 12 10 17 17 H 1.48507 * 109.47015 * 329.99955 * 14 12 10 18 18 C 1.53003 * 109.47195 * 59.99743 * 9 8 7 19 19 C 1.52994 * 109.47618 * 84.99618 * 6 5 3 20 20 H 1.09005 * 109.46773 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47194 * 299.99152 * 1 2 3 22 22 H 1.08999 * 109.47376 * 59.99938 * 1 2 3 23 23 H 1.08999 * 109.46799 * 240.00495 * 2 1 3 24 24 H 1.08991 * 109.47425 * 120.00426 * 2 1 3 25 25 H 0.97003 * 119.99991 * 0.02562 * 5 3 2 26 26 H 1.09005 * 109.47254 * 324.99708 * 6 5 3 27 27 H 1.09000 * 109.47603 * 179.97438 * 7 6 5 28 28 H 1.08998 * 109.47444 * 59.99493 * 7 6 5 29 29 H 1.09004 * 109.47166 * 179.97438 * 8 7 6 30 30 H 1.09005 * 109.46988 * 60.00077 * 8 7 6 31 31 H 1.08997 * 109.47279 * 300.00213 * 9 8 7 32 32 H 0.97000 * 119.99468 * 179.97438 * 13 12 10 33 33 H 1.09005 * 109.46932 * 60.00069 * 18 9 8 34 34 H 1.08998 * 109.47453 * 180.02562 * 18 9 8 35 35 H 1.09000 * 109.47301 * 179.97438 * 19 6 5 36 36 H 1.08999 * 109.47498 * 300.00561 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 1.2441 2.3426 0.0005 5 7 3.3573 1.6672 -0.0005 6 6 3.8456 3.0484 0.0000 7 6 5.2478 3.0939 -0.6103 8 6 6.1924 2.2188 0.2162 9 6 6.2445 2.7408 1.6534 10 6 7.1744 1.8785 2.4676 11 1 7.6775 1.0416 2.0062 12 6 7.3821 2.1573 3.8018 13 7 6.7729 3.1792 4.3626 14 14 8.5352 1.0889 4.8108 15 1 9.9122 1.6400 4.7371 16 1 8.0838 1.0723 6.2254 17 1 8.5263 -0.2949 4.2721 18 6 4.8423 2.6953 2.2637 19 6 3.8977 3.5704 1.4372 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5137 0.8901 22 1 -0.3634 0.5138 -0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 3.9877 0.9299 -0.0013 26 1 3.1727 3.6719 -0.5888 27 1 5.6110 4.1216 -0.6103 28 1 5.2107 2.7220 -1.6342 29 1 7.1913 2.2508 -0.2189 30 1 5.8291 1.1911 0.2158 31 1 6.6078 3.7684 1.6538 32 1 6.9187 3.3751 5.3013 33 1 4.4790 1.6676 2.2633 34 1 4.8793 3.0676 3.2875 35 1 4.2614 4.5980 1.4376 36 1 2.8987 3.5380 1.8721 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259071086.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:22 Heat of formation + Delta-G solvation = -89.138258 kcal Electronic energy + Delta-G solvation = -16168.846803 eV Core-core repulsion = 13650.723750 eV Total energy + Delta-G solvation = -2518.123053 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.08066 -38.99656 -35.48474 -33.95348 -33.33645 -31.44718 -30.64200 -26.80442 -25.22950 -23.23275 -22.52142 -21.44744 -19.82172 -18.37317 -18.18352 -16.71294 -16.64193 -16.38761 -15.68214 -15.14189 -14.82885 -14.46502 -14.14208 -13.88633 -13.43159 -13.40191 -12.97223 -12.94583 -12.63994 -12.58701 -12.48340 -11.99490 -11.94832 -11.88889 -11.80356 -11.24427 -10.81105 -10.74753 -10.51086 -10.32908 -9.86238 -8.04681 -6.18772 1.41939 1.43350 1.52478 1.76068 2.40259 2.45475 3.22222 3.84363 4.01032 4.10074 4.19132 4.28940 4.31799 4.57224 4.59840 4.75909 4.81852 4.88015 4.97090 5.00403 5.04839 5.10539 5.15901 5.24725 5.36447 5.42239 5.45206 5.62092 5.68546 5.74608 6.05980 6.23093 6.43542 6.70655 6.95956 7.38528 7.49777 8.98888 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.033470 B = 0.007146 C = 0.006658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.375755 B = 3917.319445 C = 4204.758144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.140 4.140 3 C 0.501 3.499 4 O -0.594 6.594 5 N -0.710 5.710 6 C 0.155 3.845 7 C -0.115 4.115 8 C -0.100 4.100 9 C 0.043 3.957 10 C -0.528 4.528 11 H 0.056 0.944 12 C 0.009 3.991 13 N -0.920 5.920 14 Si 0.950 3.050 15 H -0.278 1.278 16 H -0.289 1.289 17 H -0.264 1.264 18 C -0.091 4.091 19 C -0.122 4.122 20 H 0.086 0.914 21 H 0.040 0.960 22 H 0.050 0.950 23 H 0.121 0.879 24 H 0.106 0.894 25 H 0.410 0.590 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.053 0.947 30 H 0.059 0.941 31 H -0.009 1.009 32 H 0.257 0.743 33 H 0.032 0.968 34 H 0.048 0.952 35 H 0.054 0.946 36 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.402 -6.845 -9.751 13.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.180 4.180 3 C 0.290 3.710 4 O -0.475 6.475 5 N -0.362 5.362 6 C 0.050 3.950 7 C -0.152 4.152 8 C -0.138 4.138 9 C 0.025 3.975 10 C -0.566 4.566 11 H 0.075 0.925 12 C -0.189 4.189 13 N -0.560 5.560 14 Si 0.776 3.224 15 H -0.204 1.204 16 H -0.215 1.215 17 H -0.189 1.189 18 C -0.130 4.130 19 C -0.160 4.160 20 H 0.105 0.895 21 H 0.059 0.941 22 H 0.069 0.931 23 H 0.139 0.861 24 H 0.124 0.876 25 H 0.247 0.753 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.104 0.896 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.009 0.991 32 H 0.066 0.934 33 H 0.051 0.949 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -6.948 -6.107 -9.594 13.327 hybrid contribution 0.961 -0.280 1.178 1.546 sum -5.987 -6.387 -8.416 12.144 Atomic orbital electron populations 1.21510 0.93273 1.02565 1.01771 1.21708 0.98372 0.91576 1.06315 1.21528 0.82011 0.93025 0.74475 1.90637 1.56378 1.48328 1.52158 1.46155 1.07137 1.09028 1.73885 1.20782 0.95631 0.83170 0.95413 1.21771 0.92838 1.01407 0.99224 1.21492 0.98245 0.98594 0.95469 1.18657 0.92424 0.94474 0.91946 1.21642 1.26088 1.13732 0.95171 0.92536 1.25758 0.97438 0.96398 0.99297 1.70050 1.44131 1.29460 1.12336 0.85681 0.79205 0.79714 0.77798 1.20430 1.21507 1.18876 1.21299 0.95238 0.96771 0.99650 1.21875 0.98225 0.99548 0.96380 0.89497 0.94078 0.93111 0.86109 0.87575 0.75281 0.90835 0.91086 0.89647 0.92814 0.92266 0.99106 0.93369 0.94908 0.93349 0.92718 0.94646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.72 9.20 71.98 0.66 -2.05 16 2 C -0.14 -2.83 6.42 29.85 0.19 -2.64 16 3 C 0.50 15.08 7.79 87.66 0.68 15.76 16 4 O -0.59 -22.81 15.64 -3.01 -0.05 -22.85 16 5 N -0.71 -20.86 4.23 -442.55 -1.87 -22.73 16 6 C 0.15 5.15 2.78 44.99 0.13 5.28 16 7 C -0.11 -3.47 5.61 30.60 0.17 -3.30 16 8 C -0.10 -3.64 4.97 30.59 0.15 -3.49 16 9 C 0.04 2.07 2.10 -11.54 -0.02 2.05 16 10 C -0.53 -28.03 8.56 25.60 0.22 -27.81 16 11 H 0.06 2.89 7.74 -2.91 -0.02 2.87 16 12 C 0.01 0.50 5.30 84.66 0.45 0.95 16 13 N -0.92 -53.45 11.33 21.45 0.24 -53.21 16 14 Si 0.95 43.02 29.54 68.60 2.03 45.05 16 15 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 16 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 17 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 18 C -0.09 -4.27 4.82 30.60 0.15 -4.13 16 19 C -0.12 -4.92 5.60 30.59 0.17 -4.75 16 20 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 21 H 0.04 0.99 8.10 -2.39 -0.02 0.97 16 22 H 0.05 1.11 8.10 -2.39 -0.02 1.09 16 23 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 25 H 0.41 10.49 6.87 -92.71 -0.64 9.85 16 26 H 0.07 2.49 7.58 -2.38 -0.02 2.47 16 27 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 30 H 0.06 1.97 6.51 -2.38 -0.02 1.95 16 31 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 32 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 33 H 0.03 1.48 7.60 -2.38 -0.02 1.47 16 34 H 0.05 2.66 6.08 -2.39 -0.01 2.65 16 35 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -65.34 285.39 3.71 -61.63 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: 0.41 Total: 16.26 kcal Atomic # 6 Polarization: -27.09 SS G_CDS: 2.95 Total: -24.14 kcal Atomic # 7 Polarization: -74.31 SS G_CDS: -1.63 Total: -75.94 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: -0.05 Total: -22.85 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -65.34 3.71 -61.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259071086.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.509 kcal (2) G-P(sol) polarization free energy of solvation -65.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds