Wall clock time and date at job start Mon Mar 30 2020 03:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46934 * 2 1 4 4 H 1.08994 * 109.46985 * 305.56352 * 3 2 1 5 5 C 1.50703 * 109.47102 * 65.56485 * 3 2 1 6 6 H 1.07994 * 120.00295 * 28.11285 * 5 3 2 7 7 C 1.37874 * 119.99633 * 208.11488 * 5 3 2 8 8 N 1.31519 * 120.00423 * 6.12164 * 7 5 3 9 9 Si 1.86807 * 119.99933 * 186.11974 * 7 5 3 10 10 H 1.48498 * 109.46808 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.46980 * 120.00208 * 9 7 5 12 12 H 1.48498 * 109.46989 * 240.00210 * 9 7 5 13 13 C 1.52996 * 109.46866 * 185.56176 * 3 2 1 14 14 N 1.46509 * 109.47183 * 65.00080 * 13 3 2 15 15 C 1.34775 * 119.99997 * 179.97438 * 14 13 3 16 16 O 1.21277 * 119.99959 * 359.97438 * 15 14 13 17 17 C 1.50698 * 119.99733 * 179.97438 * 15 14 13 18 18 C 1.53004 * 109.47149 * 179.97438 * 17 15 14 19 19 C 1.52995 * 117.49843 * 243.62454 * 18 17 15 20 20 C 1.52996 * 117.49944 * 174.99843 * 18 17 15 21 21 H 1.09003 * 109.47211 * 174.04948 * 1 2 3 22 22 H 1.09003 * 109.47294 * 294.04523 * 1 2 3 23 23 H 1.08997 * 109.47350 * 54.04962 * 1 2 3 24 24 H 1.08996 * 109.46901 * 239.99962 * 2 1 3 25 25 H 1.09007 * 109.46836 * 119.99949 * 2 1 3 26 26 H 0.97001 * 120.00290 * 179.97438 * 8 7 5 27 27 H 1.09004 * 109.46955 * 184.99820 * 13 3 2 28 28 H 1.09002 * 109.47403 * 305.00239 * 13 3 2 29 29 H 0.96998 * 119.99567 * 0.02562 * 14 13 3 30 30 H 1.09004 * 109.47182 * 299.99905 * 17 15 14 31 31 H 1.09002 * 109.47313 * 59.99842 * 17 15 14 32 32 H 1.09001 * 115.54552 * 29.32999 * 18 17 15 33 33 H 1.08999 * 117.50285 * 359.97438 * 19 18 17 34 34 H 1.09002 * 117.49932 * 145.02540 * 19 18 17 35 35 H 1.08999 * 117.49953 * 214.98128 * 20 18 17 36 36 H 1.09001 * 117.49745 * 0.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5976 1.9842 -0.8359 5 6 1.6533 2.1120 1.2936 6 1 1.5265 1.5229 2.1897 7 6 1.4613 3.4768 1.3329 8 7 1.4968 4.1782 0.2209 9 14 1.1506 4.3297 2.9656 10 1 1.1583 3.3243 4.0585 11 1 2.2159 5.3350 3.2094 12 1 -0.1701 5.0074 2.9265 13 6 3.5635 1.4448 -0.1398 14 7 3.9346 0.9025 -1.4493 15 6 5.2335 0.8081 -1.7961 16 8 6.0952 1.1725 -1.0243 17 6 5.6152 0.2498 -3.1428 18 6 7.1388 0.2533 -3.2832 19 6 7.7454 1.1351 -4.3764 20 6 7.7339 -0.3862 -4.5392 21 1 -0.3634 -1.0221 -0.1065 22 1 -0.3634 0.4187 0.9385 23 1 -0.3634 0.6033 -0.8319 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8901 26 1 1.3613 5.1383 0.2485 27 1 3.9350 2.4657 -0.0508 28 1 4.0014 0.8289 0.6458 29 1 3.2453 0.6121 -2.0669 30 1 5.2442 -0.7714 -3.2312 31 1 5.1768 0.8649 -3.9286 32 1 7.6968 0.1492 -2.3527 33 1 7.0591 1.7124 -4.9960 34 1 8.7028 1.6114 -4.1653 35 1 8.6837 -0.9107 -4.4352 36 1 7.0400 -0.8091 -5.2657 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259861776.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:54 Heat of formation + Delta-G solvation = -42.913729 kcal Electronic energy + Delta-G solvation = -15426.366312 eV Core-core repulsion = 12910.247705 eV Total energy + Delta-G solvation = -2516.118607 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.24829 -37.05279 -35.72517 -33.05570 -31.77469 -29.70303 -27.73284 -24.68323 -22.57065 -22.37843 -20.91886 -19.64833 -19.43489 -17.01474 -16.28754 -15.50060 -14.99836 -14.59638 -14.50934 -13.92872 -13.45730 -13.12566 -12.84661 -12.37824 -12.24793 -11.84556 -11.52753 -11.36131 -11.04558 -10.99871 -10.88687 -10.41944 -10.34032 -10.19821 -9.96158 -9.77947 -9.41253 -9.18438 -8.92961 -8.49289 -8.15288 -6.09201 -4.11609 3.22030 3.27961 3.37227 3.40709 3.73857 3.98092 4.41145 4.75581 4.93794 4.96860 5.24841 5.28698 5.55480 5.59883 5.68924 5.76819 5.89974 5.99705 6.07364 6.08844 6.28055 6.37541 6.62089 6.66380 6.82780 6.94170 6.99339 7.16679 7.18511 7.51975 7.77961 7.87175 8.24216 8.34771 8.87789 8.98245 9.53426 11.00368 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.033835 B = 0.005865 C = 0.005301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.355227 B = 4772.720204 C = 5281.029852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.111 4.111 3 C 0.027 3.973 4 H 0.059 0.941 5 C -0.508 4.508 6 H 0.058 0.942 7 C 0.066 3.934 8 N -0.888 5.888 9 Si 0.889 3.111 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.284 1.284 13 C 0.128 3.872 14 N -0.722 5.722 15 C 0.504 3.496 16 O -0.552 6.552 17 C -0.113 4.113 18 C -0.135 4.135 19 C -0.180 4.180 20 C -0.184 4.184 21 H 0.027 0.973 22 H 0.060 0.940 23 H 0.045 0.955 24 H 0.030 0.970 25 H 0.044 0.956 26 H 0.261 0.739 27 H 0.062 0.938 28 H 0.045 0.955 29 H 0.393 0.607 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.117 0.883 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.110 -7.918 -8.593 12.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.149 4.149 3 C 0.008 3.992 4 H 0.077 0.923 5 C -0.547 4.547 6 H 0.076 0.924 7 C -0.137 4.137 8 N -0.526 5.526 9 Si 0.717 3.283 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.211 1.211 13 C 0.006 3.994 14 N -0.371 5.371 15 C 0.289 3.711 16 O -0.431 6.431 17 C -0.153 4.153 18 C -0.153 4.153 19 C -0.217 4.217 20 C -0.221 4.221 21 H 0.046 0.954 22 H 0.079 0.921 23 H 0.064 0.936 24 H 0.049 0.951 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.064 0.936 29 H 0.226 0.774 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.135 0.865 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.686 -7.456 -8.077 12.376 hybrid contribution -0.490 0.520 0.529 0.888 sum 5.197 -6.936 -7.549 11.493 Atomic orbital electron populations 1.21596 0.96761 0.98347 1.02389 1.21590 0.95482 0.99169 0.98656 1.19123 0.89110 0.91409 0.99516 0.92332 1.20991 1.46802 0.92052 0.94841 0.92423 1.25010 0.94640 0.97792 0.96236 1.69937 1.49474 1.07034 1.26122 0.86583 0.77740 0.79728 0.84281 1.19622 1.20898 1.21063 1.21982 0.99143 0.97666 0.80601 1.46460 1.06436 1.63909 1.20310 1.20479 0.83169 0.78940 0.88495 1.90644 1.49348 1.49777 1.53357 1.21244 0.95237 1.02479 0.96317 1.22058 0.94428 1.04410 0.94433 1.23014 1.02919 0.93058 1.02672 1.22985 1.02706 0.95807 1.00637 0.95399 0.92135 0.93575 0.95130 0.93698 0.92884 0.91942 0.93649 0.77374 0.88969 0.89208 0.86474 0.88891 0.88931 0.88939 0.88932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 9.63 37.16 0.36 -2.13 16 2 C -0.11 -2.19 5.32 -26.73 -0.14 -2.33 16 3 C 0.03 0.64 1.87 -91.77 -0.17 0.47 16 4 H 0.06 1.50 7.43 -51.93 -0.39 1.11 16 5 C -0.51 -13.36 7.42 -34.44 -0.26 -13.61 16 6 H 0.06 1.52 7.82 -52.49 -0.41 1.11 16 7 C 0.07 1.78 5.45 -17.82 -0.10 1.69 16 8 N -0.89 -25.12 12.87 55.43 0.71 -24.41 16 9 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 10 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 C 0.13 2.93 5.05 -4.04 -0.02 2.90 16 14 N -0.72 -13.39 5.23 -60.29 -0.32 -13.70 16 15 C 0.50 9.19 7.83 -10.99 -0.09 9.10 16 16 O -0.55 -12.38 15.56 5.56 0.09 -12.29 16 17 C -0.11 -1.47 5.98 -27.88 -0.17 -1.64 16 18 C -0.13 -1.75 5.41 -90.62 -0.49 -2.24 16 19 C -0.18 -2.04 10.18 -26.73 -0.27 -2.31 16 20 C -0.18 -1.86 10.25 -26.73 -0.27 -2.13 16 21 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 22 H 0.06 1.21 7.59 -51.93 -0.39 0.82 16 23 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.03 0.52 7.06 -51.93 -0.37 0.16 16 25 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 27 H 0.06 1.65 8.14 -51.93 -0.42 1.22 16 28 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.39 6.20 7.66 -40.82 -0.31 5.89 16 30 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.09 1.03 7.87 -51.93 -0.41 0.62 16 32 H 0.12 1.76 7.30 -51.93 -0.38 1.38 16 33 H 0.09 0.99 8.03 -51.93 -0.42 0.57 16 34 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 301.27 15.07 4.54 4.54 Total: -1.00 -29.84 301.27 -7.63 -37.47 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -6.01 Total: 4.57 kcal Atomic # 6 Polarization: -10.61 SS G_CDS: -1.62 Total: -12.23 kcal Atomic # 7 Polarization: -38.50 SS G_CDS: 0.40 Total: -38.11 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: 0.09 Total: -12.29 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.84 -7.63 -37.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259861776.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.449 kcal (2) G-P(sol) polarization free energy of solvation -29.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds