Wall clock time and date at job start Mon Mar 30 2020 03:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.47266 * 2 1 4 4 O 1.21286 * 119.99549 * 0.02562 * 3 2 1 5 5 N 1.34770 * 120.00363 * 179.97438 * 3 2 1 6 6 C 1.46496 * 120.00099 * 179.97438 * 5 3 2 7 7 H 1.09000 * 109.47007 * 35.00314 * 6 5 3 8 8 C 1.50702 * 109.47200 * 274.99845 * 6 5 3 9 9 H 1.07997 * 120.00233 * 304.53496 * 8 6 5 10 10 C 1.37874 * 119.99676 * 124.53679 * 8 6 5 11 11 N 1.31521 * 120.00312 * 353.24556 * 10 8 6 12 12 Si 1.86799 * 120.00124 * 173.24040 * 10 8 6 13 13 H 1.48506 * 109.46757 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.46902 * 119.99763 * 12 10 8 15 15 H 1.48492 * 109.47689 * 240.00488 * 12 10 8 16 16 C 1.53004 * 109.46953 * 154.99893 * 6 5 3 17 17 C 1.54259 * 110.03441 * 301.75630 * 16 6 5 18 18 C 1.54897 * 104.19583 * 217.10460 * 17 16 6 19 19 C 1.54894 * 102.74706 * 37.93825 * 18 17 16 20 20 C 1.53875 * 110.03263 * 184.58303 * 16 6 5 21 21 H 1.08996 * 109.47432 * 299.99556 * 1 2 3 22 22 H 1.09005 * 109.47400 * 60.00282 * 1 2 3 23 23 H 1.09003 * 109.46934 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47230 * 239.99586 * 2 1 3 25 25 H 1.09002 * 109.47034 * 120.00082 * 2 1 3 26 26 H 0.97008 * 119.99496 * 0.02562 * 5 3 2 27 27 H 0.96999 * 119.99659 * 5.73513 * 11 10 8 28 28 H 1.09001 * 110.01475 * 63.19698 * 16 6 5 29 29 H 1.09001 * 110.48649 * 335.77522 * 17 16 6 30 30 H 1.08998 * 110.49123 * 98.42692 * 17 16 6 31 31 H 1.08998 * 110.75372 * 279.62857 * 18 17 16 32 32 H 1.08996 * 110.91415 * 156.32350 * 18 17 16 33 33 H 1.08999 * 110.48699 * 203.37641 * 19 18 17 34 34 H 1.09004 * 110.59349 * 80.79115 * 19 18 17 35 35 H 1.08998 * 110.03796 * 238.57417 * 20 16 6 36 36 H 1.09001 * 110.03195 * 0.02562 * 20 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3574 1.6671 0.0005 6 6 3.8457 3.0483 0.0000 7 1 3.1728 3.6717 0.5887 8 6 3.8971 3.5623 -1.4157 9 1 4.4581 3.0244 -2.1655 10 6 3.2279 4.7194 -1.7537 11 7 2.4382 5.3021 -0.8781 12 14 3.4429 5.4599 -3.4551 13 1 4.3772 4.6192 -4.2462 14 1 2.1267 5.5157 -4.1406 15 1 3.9954 6.8326 -3.3315 16 6 5.2480 3.0937 0.6103 17 6 5.2182 2.5289 2.0455 18 6 6.2202 3.4171 2.8241 19 6 5.9724 4.8219 2.2203 20 6 5.7275 4.5516 0.7214 21 1 -0.3634 0.5137 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 3.9877 0.9297 0.0005 27 1 2.3903 4.9662 0.0307 28 1 5.9409 2.5185 -0.0038 29 1 4.2185 2.6191 2.4703 30 1 5.5445 1.4889 2.0531 31 1 7.2451 3.0939 2.6423 32 1 5.9981 3.4107 3.8912 33 1 6.8491 5.4553 2.3556 34 1 5.0952 5.2844 2.6729 35 1 6.6536 4.6838 0.1620 36 1 4.9611 5.2268 0.3409 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260048808.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:29 Heat of formation + Delta-G solvation = -68.784893 kcal Electronic energy + Delta-G solvation = -16373.127420 eV Core-core repulsion = 13855.886955 eV Total energy + Delta-G solvation = -2517.240465 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.84586 -37.43931 -33.99843 -32.37148 -31.87342 -28.91550 -27.99710 -25.31685 -23.90928 -21.85448 -20.11429 -19.42015 -18.69235 -16.82694 -16.14903 -15.57290 -14.82825 -14.42336 -14.07304 -13.69455 -13.25843 -12.84426 -12.66865 -12.25486 -12.08636 -11.77121 -11.26859 -10.81276 -10.73665 -10.61404 -10.57099 -10.44523 -10.30037 -10.22244 -10.12860 -10.02730 -9.28884 -9.04383 -8.72464 -8.31067 -7.50471 -6.23828 -3.99209 3.46461 3.50420 3.63089 3.76105 4.34637 4.58757 5.21442 5.27391 5.33769 5.43229 5.49894 5.54007 5.65233 6.03015 6.03745 6.07354 6.11350 6.16327 6.21484 6.30405 6.33404 6.38548 6.40816 6.59634 6.65782 6.80843 6.89571 6.99636 7.22753 7.42297 7.88910 8.23224 8.45943 8.74677 8.96374 9.46430 9.75588 11.11894 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.015748 B = 0.013870 C = 0.008179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.602461 B = 2018.289573 C = 3422.384741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.146 4.146 3 C 0.497 3.503 4 O -0.535 6.535 5 N -0.719 5.719 6 C 0.247 3.753 7 H 0.063 0.937 8 C -0.603 4.603 9 H 0.046 0.954 10 C 0.035 3.965 11 N -0.890 5.890 12 Si 1.067 2.933 13 H -0.291 1.291 14 H -0.288 1.288 15 H -0.287 1.287 16 C -0.085 4.085 17 C -0.122 4.122 18 C -0.124 4.124 19 C -0.126 4.126 20 C -0.104 4.104 21 H 0.057 0.943 22 H 0.060 0.940 23 H 0.049 0.951 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.373 0.627 27 H 0.277 0.723 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.051 0.949 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.901 -7.690 4.606 10.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.187 4.187 3 C 0.281 3.719 4 O -0.412 6.412 5 N -0.368 5.368 6 C 0.146 3.854 7 H 0.081 0.919 8 C -0.642 4.642 9 H 0.064 0.936 10 C -0.174 4.174 11 N -0.526 5.526 12 Si 0.896 3.104 13 H -0.217 1.217 14 H -0.215 1.215 15 H -0.213 1.213 16 C -0.105 4.105 17 C -0.160 4.160 18 C -0.161 4.161 19 C -0.164 4.164 20 C -0.142 4.142 21 H 0.077 0.923 22 H 0.079 0.921 23 H 0.068 0.932 24 H 0.099 0.901 25 H 0.096 0.904 26 H 0.204 0.796 27 H 0.091 0.909 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.797 -5.764 3.636 7.801 hybrid contribution 0.944 -1.763 0.834 2.167 sum 4.741 -7.527 4.470 9.955 Atomic orbital electron populations 1.21464 0.93943 1.00299 1.03260 1.21654 0.98047 0.96141 1.02840 1.20399 0.83353 0.90536 0.77570 1.90711 1.55141 1.46094 1.49255 1.46940 1.05752 1.10328 1.73751 1.19134 0.89902 0.79265 0.97109 0.91895 1.22000 1.35984 1.11211 0.95055 0.93603 1.25708 0.91934 0.94807 1.04950 1.70671 1.32407 1.43326 1.06162 0.83602 0.76078 0.75754 0.74980 1.21684 1.21473 1.21337 1.22031 0.99263 0.95728 0.93437 1.22503 0.98739 0.97810 0.96901 1.22477 0.98980 0.96205 0.98456 1.22402 1.00399 0.96281 0.97301 1.21954 1.01036 0.97276 0.93958 0.92345 0.92093 0.93152 0.90095 0.90356 0.79612 0.90923 0.92595 0.92151 0.93045 0.92278 0.92734 0.92731 0.92168 0.93026 0.90048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.04 9.20 37.16 0.34 -1.70 16 2 C -0.15 -2.32 6.42 -27.88 -0.18 -2.50 16 3 C 0.50 10.86 7.79 -10.99 -0.09 10.77 16 4 O -0.54 -14.48 15.64 5.55 0.09 -14.39 16 5 N -0.72 -15.15 4.63 -54.93 -0.25 -15.40 16 6 C 0.25 5.94 1.53 -69.08 -0.11 5.83 16 7 H 0.06 1.76 5.07 -51.93 -0.26 1.50 16 8 C -0.60 -16.48 7.84 -34.44 -0.27 -16.75 16 9 H 0.05 1.27 7.82 -52.49 -0.41 0.86 16 10 C 0.03 0.99 5.04 -17.82 -0.09 0.90 16 11 N -0.89 -27.20 13.65 55.43 0.76 -26.45 16 12 Si 1.07 25.73 29.91 -169.99 -5.08 20.65 16 13 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 15 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 16 C -0.08 -1.71 2.54 -89.50 -0.23 -1.93 16 17 C -0.12 -2.07 5.95 -25.07 -0.15 -2.22 16 18 C -0.12 -1.87 6.91 -24.73 -0.17 -2.04 16 19 C -0.13 -2.12 6.83 -25.07 -0.17 -2.29 16 20 C -0.10 -2.09 6.07 -25.61 -0.16 -2.24 16 21 H 0.06 0.95 8.10 -51.93 -0.42 0.53 16 22 H 0.06 1.04 8.10 -51.93 -0.42 0.62 16 23 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 25 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.37 6.55 8.60 -40.82 -0.35 6.20 16 27 H 0.28 8.62 6.26 -40.82 -0.26 8.37 16 28 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.06 1.12 7.85 -51.93 -0.41 0.71 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.08 1.93 6.94 -51.93 -0.36 1.57 16 LS Contribution 291.43 15.07 4.39 4.39 Total: -1.00 -32.10 291.43 -7.28 -39.37 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -5.91 Total: 6.00 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -1.26 Total: -14.18 kcal Atomic # 7 Polarization: -42.35 SS G_CDS: 0.50 Total: -41.85 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: 0.09 Total: -14.39 kcal Atomic # 14 Polarization: 25.73 SS G_CDS: -5.08 Total: 20.65 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -32.10 -7.28 -39.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260048808.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.410 kcal (2) G-P(sol) polarization free energy of solvation -32.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds