Wall clock time and date at job start Mon Mar 30 2020 03:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.47266 * 2 1 4 4 O 1.21286 * 119.99549 * 0.02562 * 3 2 1 5 5 N 1.34770 * 120.00363 * 179.97438 * 3 2 1 6 6 C 1.46496 * 120.00099 * 179.97438 * 5 3 2 7 7 H 1.09000 * 109.47007 * 35.00314 * 6 5 3 8 8 C 1.50702 * 109.47200 * 274.99845 * 6 5 3 9 9 H 1.07997 * 120.00233 * 304.53496 * 8 6 5 10 10 C 1.37874 * 119.99676 * 124.53679 * 8 6 5 11 11 N 1.31521 * 120.00312 * 353.24556 * 10 8 6 12 12 Si 1.86799 * 120.00124 * 173.24040 * 10 8 6 13 13 H 1.48506 * 109.46757 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.46902 * 119.99763 * 12 10 8 15 15 H 1.48492 * 109.47689 * 240.00488 * 12 10 8 16 16 C 1.53004 * 109.46953 * 154.99893 * 6 5 3 17 17 C 1.54259 * 110.03441 * 301.75630 * 16 6 5 18 18 C 1.54897 * 104.19583 * 217.10460 * 17 16 6 19 19 C 1.54894 * 102.74706 * 37.93825 * 18 17 16 20 20 C 1.53875 * 110.03263 * 184.58303 * 16 6 5 21 21 H 1.08996 * 109.47432 * 299.99556 * 1 2 3 22 22 H 1.09005 * 109.47400 * 60.00282 * 1 2 3 23 23 H 1.09003 * 109.46934 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47230 * 239.99586 * 2 1 3 25 25 H 1.09002 * 109.47034 * 120.00082 * 2 1 3 26 26 H 0.97008 * 119.99496 * 0.02562 * 5 3 2 27 27 H 0.96999 * 119.99659 * 5.73513 * 11 10 8 28 28 H 1.09001 * 110.01475 * 63.19698 * 16 6 5 29 29 H 1.09001 * 110.48649 * 335.77522 * 17 16 6 30 30 H 1.08998 * 110.49123 * 98.42692 * 17 16 6 31 31 H 1.08998 * 110.75372 * 279.62857 * 18 17 16 32 32 H 1.08996 * 110.91415 * 156.32350 * 18 17 16 33 33 H 1.08999 * 110.48699 * 203.37641 * 19 18 17 34 34 H 1.09004 * 110.59349 * 80.79115 * 19 18 17 35 35 H 1.08998 * 110.03796 * 238.57417 * 20 16 6 36 36 H 1.09001 * 110.03195 * 0.02562 * 20 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3574 1.6671 0.0005 6 6 3.8457 3.0483 0.0000 7 1 3.1728 3.6717 0.5887 8 6 3.8971 3.5623 -1.4157 9 1 4.4581 3.0244 -2.1655 10 6 3.2279 4.7194 -1.7537 11 7 2.4382 5.3021 -0.8781 12 14 3.4429 5.4599 -3.4551 13 1 4.3772 4.6192 -4.2462 14 1 2.1267 5.5157 -4.1406 15 1 3.9954 6.8326 -3.3315 16 6 5.2480 3.0937 0.6103 17 6 5.2182 2.5289 2.0455 18 6 6.2202 3.4171 2.8241 19 6 5.9724 4.8219 2.2203 20 6 5.7275 4.5516 0.7214 21 1 -0.3634 0.5137 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 3.9877 0.9297 0.0005 27 1 2.3903 4.9662 0.0307 28 1 5.9409 2.5185 -0.0038 29 1 4.2185 2.6191 2.4703 30 1 5.5445 1.4889 2.0531 31 1 7.2451 3.0939 2.6423 32 1 5.9981 3.4107 3.8912 33 1 6.8491 5.4553 2.3556 34 1 5.0952 5.2844 2.6729 35 1 6.6536 4.6838 0.1620 36 1 4.9611 5.2268 0.3409 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260048808.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:28 Heat of formation + Delta-G solvation = -90.142414 kcal Electronic energy + Delta-G solvation = -16374.053552 eV Core-core repulsion = 13855.886955 eV Total energy + Delta-G solvation = -2518.166597 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.59300 -39.02433 -35.82434 -34.27001 -33.42182 -30.54955 -29.44710 -27.15703 -25.56582 -23.59391 -21.48769 -21.15206 -20.30262 -18.85715 -17.79859 -17.20599 -16.32068 -15.91663 -15.74367 -15.58150 -15.06991 -14.44322 -14.16225 -14.01195 -13.80453 -13.09110 -12.72994 -12.58827 -12.41389 -12.01485 -11.99330 -11.94719 -11.87485 -11.85999 -11.80245 -11.46629 -11.08913 -10.98995 -10.64589 -10.35921 -9.45020 -8.46969 -6.22931 1.47751 1.56808 1.71285 2.05323 2.57488 2.71506 3.34349 3.86137 3.88372 3.98426 4.07332 4.29350 4.31641 4.53769 4.62956 4.73145 4.77665 4.85582 4.88037 4.93097 4.95879 5.05392 5.08096 5.13828 5.26146 5.32669 5.35593 5.49298 5.52173 5.69132 6.02997 6.13769 6.30095 6.70817 7.02437 7.60412 7.79192 8.86102 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.015748 B = 0.013870 C = 0.008179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.602461 B = 2018.289573 C = 3422.384741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.133 4.133 3 C 0.482 3.518 4 O -0.597 6.597 5 N -0.712 5.712 6 C 0.250 3.750 7 H 0.018 0.982 8 C -0.604 4.604 9 H 0.040 0.960 10 C -0.018 4.018 11 N -0.924 5.924 12 Si 1.107 2.893 13 H -0.269 1.269 14 H -0.293 1.293 15 H -0.276 1.276 16 C -0.081 4.081 17 C -0.115 4.115 18 C -0.112 4.112 19 C -0.124 4.124 20 C -0.108 4.108 21 H 0.041 0.959 22 H 0.033 0.967 23 H 0.093 0.907 24 H 0.107 0.893 25 H 0.117 0.883 26 H 0.395 0.605 27 H 0.260 0.740 28 H 0.065 0.935 29 H 0.037 0.963 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.043 0.957 35 H 0.061 0.939 36 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.924 -10.089 4.993 13.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.172 4.172 3 C 0.269 3.731 4 O -0.478 6.478 5 N -0.361 5.361 6 C 0.148 3.852 7 H 0.036 0.964 8 C -0.643 4.643 9 H 0.058 0.942 10 C -0.219 4.219 11 N -0.562 5.562 12 Si 0.930 3.070 13 H -0.193 1.193 14 H -0.220 1.220 15 H -0.202 1.202 16 C -0.101 4.101 17 C -0.153 4.153 18 C -0.150 4.150 19 C -0.161 4.161 20 C -0.146 4.146 21 H 0.060 0.940 22 H 0.052 0.948 23 H 0.112 0.888 24 H 0.125 0.875 25 H 0.135 0.865 26 H 0.230 0.770 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.056 0.944 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 5.864 -8.219 4.027 10.869 hybrid contribution 0.319 -1.079 0.725 1.338 sum 6.183 -9.297 4.752 12.135 Atomic orbital electron populations 1.21477 0.93840 1.02342 1.01176 1.21660 0.98004 0.91743 1.05821 1.21600 0.82885 0.92738 0.75834 1.90696 1.56561 1.48741 1.51826 1.46612 1.06434 1.09876 1.73158 1.18897 0.91299 0.79992 0.95023 0.96447 1.22295 1.34713 1.10795 0.96497 0.94171 1.26977 0.91605 0.95831 1.07522 1.70783 1.34990 1.44545 1.05875 0.83102 0.76224 0.76054 0.71593 1.19347 1.21981 1.20209 1.21922 0.96365 0.96243 0.95555 1.22418 0.98481 0.99810 0.94557 1.22454 0.99578 0.93808 0.99123 1.22379 1.00769 0.98228 0.94749 1.21944 0.99839 0.96355 0.96496 0.93990 0.94791 0.88847 0.87510 0.86522 0.77025 0.92817 0.91700 0.94376 0.90116 0.89820 0.90714 0.90295 0.93835 0.91991 0.94786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.83 9.20 71.98 0.66 -3.17 16 2 C -0.13 -3.84 6.42 29.85 0.19 -3.65 16 3 C 0.48 21.07 7.79 87.66 0.68 21.75 16 4 O -0.60 -33.75 15.64 -3.05 -0.05 -33.80 16 5 N -0.71 -29.63 4.63 -446.10 -2.06 -31.69 16 6 C 0.25 12.34 1.53 44.25 0.07 12.41 16 7 H 0.02 1.04 5.07 -2.39 -0.01 1.03 16 8 C -0.60 -33.75 7.84 25.60 0.20 -33.55 16 9 H 0.04 2.24 7.82 -2.91 -0.02 2.22 16 10 C -0.02 -1.06 5.04 84.65 0.43 -0.63 16 11 N -0.92 -59.70 13.65 21.45 0.29 -59.41 16 12 Si 1.11 52.89 29.91 68.60 2.05 54.94 16 13 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 14 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 15 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 16 C -0.08 -3.21 2.54 -10.07 -0.03 -3.23 16 17 C -0.12 -3.66 5.95 31.67 0.19 -3.47 16 18 C -0.11 -3.02 6.91 31.89 0.22 -2.80 16 19 C -0.12 -4.00 6.83 31.67 0.22 -3.79 16 20 C -0.11 -4.35 6.07 31.32 0.19 -4.16 16 21 H 0.04 1.34 8.10 -2.39 -0.02 1.33 16 22 H 0.03 1.15 8.10 -2.38 -0.02 1.13 16 23 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 24 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 25 H 0.12 2.55 8.14 -2.39 -0.02 2.53 16 26 H 0.40 12.97 8.60 -92.70 -0.80 12.17 16 27 H 0.26 17.40 6.26 -92.71 -0.58 16.82 16 28 H 0.06 2.43 8.14 -2.39 -0.02 2.42 16 29 H 0.04 1.38 7.85 -2.39 -0.02 1.36 16 30 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 35 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.03 1.68 6.94 -2.39 -0.02 1.66 16 Total: -1.00 -75.54 291.43 3.69 -71.84 By element: Atomic # 1 Polarization: 21.97 SS G_CDS: 0.44 Total: 22.41 kcal Atomic # 6 Polarization: -27.31 SS G_CDS: 3.02 Total: -24.29 kcal Atomic # 7 Polarization: -89.33 SS G_CDS: -1.77 Total: -91.10 kcal Atomic # 8 Polarization: -33.75 SS G_CDS: -0.05 Total: -33.80 kcal Atomic # 14 Polarization: 52.89 SS G_CDS: 2.05 Total: 54.94 kcal Total: -75.54 3.69 -71.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260048808.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.300 kcal (2) G-P(sol) polarization free energy of solvation -75.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds