Wall clock time and date at job start Mon Mar 30 2020 03:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47054 * 2 1 4 4 N 1.46503 * 109.47080 * 120.00168 * 2 1 3 5 5 C 1.45752 * 117.94464 * 120.00258 * 4 2 1 6 6 C 1.52927 * 110.48669 * 199.07616 * 5 4 2 7 7 H 1.08996 * 109.60496 * 69.00105 * 6 5 4 8 8 C 1.52997 * 109.60399 * 189.49212 * 6 5 4 9 9 C 1.50698 * 109.47301 * 184.99964 * 8 6 5 10 10 H 1.08004 * 119.99860 * 359.97438 * 9 8 6 11 11 C 1.37870 * 120.00179 * 179.97438 * 9 8 6 12 12 N 1.31513 * 120.00012 * 359.97438 * 11 9 8 13 13 Si 1.86810 * 119.99884 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46912 * 60.00064 * 13 11 9 15 15 H 1.48508 * 109.46919 * 179.97438 * 13 11 9 16 16 H 1.48493 * 109.47031 * 299.99591 * 13 11 9 17 17 C 1.53348 * 108.67100 * 309.24289 * 6 5 4 18 18 C 1.53062 * 108.43503 * 67.52087 * 17 6 5 19 19 C 1.33348 * 117.94975 * 299.97801 * 4 2 1 20 20 O 1.21285 * 118.24388 * 357.75671 * 19 4 2 21 21 H 1.09003 * 109.46939 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.47188 * 299.99764 * 1 2 3 23 23 H 1.08997 * 109.47273 * 60.00150 * 1 2 3 24 24 H 1.09006 * 109.47359 * 239.99931 * 2 1 3 25 25 H 1.09006 * 109.47055 * 179.97438 * 3 2 1 26 26 H 1.08995 * 109.47455 * 300.00210 * 3 2 1 27 27 H 1.09005 * 109.46908 * 60.00530 * 3 2 1 28 28 H 1.08997 * 109.30320 * 78.76251 * 5 4 2 29 29 H 1.09000 * 109.13308 * 319.27920 * 5 4 2 30 30 H 1.09006 * 109.47006 * 304.99504 * 8 6 5 31 31 H 1.08999 * 109.47387 * 64.99289 * 8 6 5 32 32 H 0.97011 * 119.99816 * 180.02562 * 12 11 9 33 33 H 1.08999 * 109.67242 * 187.26364 * 17 6 5 34 34 H 1.08999 * 109.67505 * 307.80216 * 17 6 5 35 35 H 1.08998 * 109.39847 * 190.98354 * 18 17 6 36 36 H 1.08995 * 109.40671 * 71.23724 * 18 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.8530 -1.8710 1.0104 6 6 2.8768 -2.7156 2.2851 7 1 1.8970 -3.1659 2.4437 8 6 3.9347 -3.8131 2.1539 9 6 3.8721 -4.7177 3.3576 10 1 3.1502 -4.5284 4.1383 11 6 4.7363 -5.7868 3.4623 12 7 5.6150 -6.0176 2.5113 13 14 4.6591 -6.9076 4.9548 14 1 3.3115 -7.5258 5.0403 15 1 5.6850 -7.9737 4.8268 16 1 4.9190 -6.1148 6.1831 17 6 3.2232 -1.8063 3.4702 18 6 2.0612 -0.8347 3.6906 19 6 1.6717 -0.1998 2.3866 20 8 1.0066 0.8140 2.4178 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5139 -0.8900 25 1 3.1300 1.4425 0.0005 26 1 1.6766 1.9564 -0.8899 27 1 1.6767 1.9563 0.8901 28 1 3.8684 -1.5594 0.7658 29 1 2.4517 -2.4670 0.1908 30 1 3.7447 -4.3950 1.2520 31 1 4.9236 -3.3590 2.0917 32 1 6.2228 -6.7701 2.5848 33 1 3.3713 -2.4104 4.3653 34 1 4.1323 -1.2467 3.2500 35 1 2.3657 -0.0597 4.3940 36 1 1.2081 -1.3769 4.0983 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260100262.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:11 Heat of formation + Delta-G solvation = -58.183148 kcal Electronic energy + Delta-G solvation = -16142.664343 eV Core-core repulsion = 13625.883604 eV Total energy + Delta-G solvation = -2516.780739 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.41400 -36.50724 -35.41021 -32.91853 -30.96755 -30.31693 -27.04212 -26.67353 -23.81893 -23.29213 -22.01285 -19.63125 -18.03006 -16.68810 -16.18506 -15.53407 -15.19888 -14.51356 -14.15505 -13.90244 -13.58147 -13.17699 -12.89137 -12.61981 -12.21211 -11.98058 -11.86881 -11.57361 -11.41972 -11.12980 -10.97726 -10.87048 -10.71119 -10.44844 -10.36431 -9.83928 -9.37231 -9.20174 -8.94563 -8.41690 -8.36550 -6.06433 -4.08748 2.97857 3.29643 3.31223 3.34825 3.37318 4.40727 4.83129 5.19493 5.22427 5.27873 5.29049 5.36123 5.43006 5.45273 5.74634 5.76762 5.81613 5.90752 5.99143 6.00333 6.04369 6.28578 6.32200 6.38530 6.44873 6.74634 6.84405 6.88495 6.95271 7.55516 7.67967 7.83788 7.91650 8.32981 8.52547 8.96636 9.55595 11.04785 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.049088 B = 0.006316 C = 0.005941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.265183 B = 4431.971928 C = 4711.685576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.136 3.864 3 C -0.169 4.169 4 N -0.597 5.597 5 C 0.114 3.886 6 C -0.094 4.094 7 H 0.066 0.934 8 C 0.032 3.968 9 C -0.519 4.519 10 H 0.057 0.943 11 C 0.058 3.942 12 N -0.895 5.895 13 Si 0.891 3.109 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.277 1.277 17 C -0.111 4.111 18 C -0.137 4.137 19 C 0.521 3.479 20 O -0.567 6.567 21 H 0.051 0.949 22 H 0.080 0.920 23 H 0.058 0.942 24 H 0.081 0.919 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.084 0.916 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.019 0.981 31 H 0.020 0.980 32 H 0.261 0.739 33 H 0.087 0.913 34 H 0.060 0.940 35 H 0.090 0.910 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.973 9.527 -3.479 11.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.033 3.967 3 C -0.227 4.227 4 N -0.329 5.329 5 C -0.008 4.008 6 C -0.113 4.113 7 H 0.085 0.915 8 C -0.006 4.006 9 C -0.557 4.557 10 H 0.075 0.925 11 C -0.143 4.143 12 N -0.534 5.534 13 Si 0.719 3.281 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.202 1.202 17 C -0.148 4.148 18 C -0.176 4.176 19 C 0.311 3.689 20 O -0.448 6.448 21 H 0.070 0.930 22 H 0.099 0.901 23 H 0.077 0.923 24 H 0.099 0.901 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.102 0.898 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.037 0.963 31 H 0.038 0.962 32 H 0.071 0.929 33 H 0.105 0.895 34 H 0.078 0.922 35 H 0.109 0.891 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.149 9.902 -3.512 12.174 hybrid contribution 0.146 -0.883 0.669 1.117 sum -6.003 9.020 -2.843 11.202 Atomic orbital electron populations 1.22192 0.95153 1.01971 1.03305 1.21025 0.94634 0.93517 0.87523 1.22230 1.00700 0.96347 1.03456 1.47569 1.50701 1.28967 1.05645 1.21739 0.93885 0.85076 1.00136 1.21570 1.02058 0.96077 0.91575 0.91546 1.19056 0.92568 0.91479 0.97482 1.21135 1.18038 1.11070 1.05444 0.92501 1.25000 0.95413 0.97654 0.96249 1.69946 1.20740 1.29719 1.32985 0.86677 0.77739 0.80430 0.83281 1.20266 1.21329 1.20208 1.21674 0.95898 0.96385 1.00852 1.21731 1.01262 1.00340 0.94308 1.20231 0.78946 0.84040 0.85682 1.90552 1.40669 1.25579 1.87965 0.92962 0.90137 0.92317 0.90062 0.93085 0.92442 0.89764 0.91925 0.91253 0.96276 0.96162 0.92892 0.89455 0.92169 0.89129 0.88851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 9.08 37.16 0.34 -1.87 16 2 C 0.14 1.85 3.21 -67.93 -0.22 1.63 16 3 C -0.17 -2.22 9.08 37.16 0.34 -1.88 16 4 N -0.60 -9.28 2.79 -167.37 -0.47 -9.74 16 5 C 0.11 1.82 5.56 -4.48 -0.02 1.80 16 6 C -0.09 -1.74 2.20 -90.48 -0.20 -1.94 16 7 H 0.07 1.27 8.12 -51.93 -0.42 0.85 16 8 C 0.03 0.74 4.43 -27.89 -0.12 0.62 16 9 C -0.52 -13.59 8.33 -34.44 -0.29 -13.88 16 10 H 0.06 1.44 7.16 -52.48 -0.38 1.06 16 11 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 12 N -0.89 -25.74 13.29 55.43 0.74 -25.01 16 13 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 14 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 15 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 17 C -0.11 -1.90 5.23 -26.52 -0.14 -2.04 16 18 C -0.14 -2.10 6.03 -28.10 -0.17 -2.27 16 19 C 0.52 8.72 6.88 -11.87 -0.08 8.64 16 20 O -0.57 -10.45 12.47 5.55 0.07 -10.38 16 21 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.08 1.23 6.01 -51.93 -0.31 0.92 16 23 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.08 0.97 7.79 -51.93 -0.40 0.57 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.08 1.29 5.84 -51.93 -0.30 0.99 16 28 H 0.06 0.99 8.11 -51.93 -0.42 0.57 16 29 H 0.07 1.04 8.03 -51.93 -0.42 0.63 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 33 H 0.09 1.60 6.88 -51.93 -0.36 1.25 16 34 H 0.06 1.02 8.13 -51.93 -0.42 0.60 16 35 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 284.41 15.07 4.29 4.29 Total: -1.00 -28.86 284.41 -7.01 -35.88 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -5.95 Total: -1.15 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: -0.66 Total: -9.69 kcal Atomic # 7 Polarization: -35.02 SS G_CDS: 0.27 Total: -34.75 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.07 Total: -10.38 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -28.86 -7.01 -35.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260100262.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.307 kcal (2) G-P(sol) polarization free energy of solvation -28.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds