Wall clock time and date at job start Mon Mar 30 2020 03:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47054 * 2 1 4 4 N 1.46503 * 109.47080 * 120.00168 * 2 1 3 5 5 C 1.45752 * 117.94464 * 120.00258 * 4 2 1 6 6 C 1.52927 * 110.48669 * 199.07616 * 5 4 2 7 7 H 1.08996 * 109.60496 * 69.00105 * 6 5 4 8 8 C 1.52997 * 109.60399 * 189.49212 * 6 5 4 9 9 C 1.50698 * 109.47301 * 184.99964 * 8 6 5 10 10 H 1.08004 * 119.99860 * 359.97438 * 9 8 6 11 11 C 1.37870 * 120.00179 * 179.97438 * 9 8 6 12 12 N 1.31513 * 120.00012 * 359.97438 * 11 9 8 13 13 Si 1.86810 * 119.99884 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46912 * 60.00064 * 13 11 9 15 15 H 1.48508 * 109.46919 * 179.97438 * 13 11 9 16 16 H 1.48493 * 109.47031 * 299.99591 * 13 11 9 17 17 C 1.53348 * 108.67100 * 309.24289 * 6 5 4 18 18 C 1.53062 * 108.43503 * 67.52087 * 17 6 5 19 19 C 1.33348 * 117.94975 * 299.97801 * 4 2 1 20 20 O 1.21285 * 118.24388 * 357.75671 * 19 4 2 21 21 H 1.09003 * 109.46939 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.47188 * 299.99764 * 1 2 3 23 23 H 1.08997 * 109.47273 * 60.00150 * 1 2 3 24 24 H 1.09006 * 109.47359 * 239.99931 * 2 1 3 25 25 H 1.09006 * 109.47055 * 179.97438 * 3 2 1 26 26 H 1.08995 * 109.47455 * 300.00210 * 3 2 1 27 27 H 1.09005 * 109.46908 * 60.00530 * 3 2 1 28 28 H 1.08997 * 109.30320 * 78.76251 * 5 4 2 29 29 H 1.09000 * 109.13308 * 319.27920 * 5 4 2 30 30 H 1.09006 * 109.47006 * 304.99504 * 8 6 5 31 31 H 1.08999 * 109.47387 * 64.99289 * 8 6 5 32 32 H 0.97011 * 119.99816 * 180.02562 * 12 11 9 33 33 H 1.08999 * 109.67242 * 187.26364 * 17 6 5 34 34 H 1.08999 * 109.67505 * 307.80216 * 17 6 5 35 35 H 1.08998 * 109.39847 * 190.98354 * 18 17 6 36 36 H 1.08995 * 109.40671 * 71.23724 * 18 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.8530 -1.8710 1.0104 6 6 2.8768 -2.7156 2.2851 7 1 1.8970 -3.1659 2.4437 8 6 3.9347 -3.8131 2.1539 9 6 3.8721 -4.7177 3.3576 10 1 3.1502 -4.5284 4.1383 11 6 4.7363 -5.7868 3.4623 12 7 5.6150 -6.0176 2.5113 13 14 4.6591 -6.9076 4.9548 14 1 3.3115 -7.5258 5.0403 15 1 5.6850 -7.9737 4.8268 16 1 4.9190 -6.1148 6.1831 17 6 3.2232 -1.8063 3.4702 18 6 2.0612 -0.8347 3.6906 19 6 1.6717 -0.1998 2.3866 20 8 1.0066 0.8140 2.4178 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5139 -0.8900 25 1 3.1300 1.4425 0.0005 26 1 1.6766 1.9564 -0.8899 27 1 1.6767 1.9563 0.8901 28 1 3.8684 -1.5594 0.7658 29 1 2.4517 -2.4670 0.1908 30 1 3.7447 -4.3950 1.2520 31 1 4.9236 -3.3590 2.0917 32 1 6.2228 -6.7701 2.5848 33 1 3.3713 -2.4104 4.3653 34 1 4.1323 -1.2467 3.2500 35 1 2.3657 -0.0597 4.3940 36 1 1.2081 -1.3769 4.0983 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260100262.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:10 Heat of formation + Delta-G solvation = -74.190081 kcal Electronic energy + Delta-G solvation = -16143.358455 eV Core-core repulsion = 13625.883604 eV Total energy + Delta-G solvation = -2517.474851 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.69846 -37.98275 -36.64789 -34.82508 -32.30999 -31.83279 -28.40999 -28.06740 -25.31521 -24.81032 -23.41842 -21.08363 -19.39107 -18.45055 -17.62032 -16.85138 -16.61882 -16.30884 -15.52654 -15.17712 -14.73626 -14.54911 -14.16981 -14.15675 -13.98212 -13.37870 -13.08493 -12.96112 -12.80762 -12.64415 -12.44786 -12.25501 -12.20752 -12.05723 -11.79505 -11.43445 -11.11386 -11.03806 -10.49021 -10.28587 -9.62720 -8.14544 -6.22648 1.44967 1.45827 1.53322 1.68531 2.09669 2.45539 3.20244 3.63022 3.92623 3.95570 4.07153 4.12971 4.18062 4.35176 4.53737 4.57185 4.63664 4.77002 4.79201 4.89800 4.93348 4.98739 4.99520 5.17485 5.27213 5.28203 5.39394 5.42482 5.56527 5.72657 5.78197 5.89977 6.30246 6.57023 6.92657 7.24047 7.45745 8.96927 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.049088 B = 0.006316 C = 0.005941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.265183 B = 4431.971928 C = 4711.685576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.127 3.873 3 C -0.163 4.163 4 N -0.596 5.596 5 C 0.122 3.878 6 C -0.086 4.086 7 H 0.063 0.937 8 C 0.038 3.962 9 C -0.529 4.529 10 H 0.063 0.937 11 C 0.003 3.997 12 N -0.933 5.933 13 Si 0.955 3.045 14 H -0.270 1.270 15 H -0.288 1.288 16 H -0.268 1.268 17 C -0.104 4.104 18 C -0.129 4.129 19 C 0.515 3.485 20 O -0.585 6.585 21 H 0.050 0.950 22 H 0.056 0.944 23 H 0.082 0.918 24 H 0.102 0.898 25 H 0.049 0.951 26 H 0.081 0.919 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.082 0.918 30 H -0.003 1.003 31 H -0.001 1.001 32 H 0.261 0.739 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.105 0.895 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.753 9.938 -3.412 12.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.025 3.975 3 C -0.221 4.221 4 N -0.327 5.327 5 C 0.000 4.000 6 C -0.104 4.104 7 H 0.081 0.919 8 C 0.000 4.000 9 C -0.567 4.567 10 H 0.081 0.919 11 C -0.195 4.195 12 N -0.574 5.574 13 Si 0.780 3.220 14 H -0.195 1.195 15 H -0.214 1.214 16 H -0.193 1.193 17 C -0.141 4.141 18 C -0.169 4.169 19 C 0.305 3.695 20 O -0.467 6.467 21 H 0.069 0.931 22 H 0.075 0.925 23 H 0.101 0.899 24 H 0.120 0.880 25 H 0.068 0.932 26 H 0.100 0.900 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.100 0.900 30 H 0.016 0.984 31 H 0.017 0.983 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.124 0.876 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -6.941 10.322 -3.448 12.908 hybrid contribution 0.385 -0.989 0.606 1.222 sum -6.556 9.334 -2.842 11.755 Atomic orbital electron populations 1.22125 0.94701 1.01857 1.03303 1.21297 0.95042 0.93860 0.87331 1.22156 1.00569 0.95940 1.03426 1.47595 1.50249 1.28611 1.06209 1.21563 0.94384 0.85126 0.98945 1.21345 0.99984 0.95352 0.93763 0.91853 1.18902 0.93050 0.92318 0.95694 1.21584 1.17626 1.11237 1.06231 0.91860 1.25843 0.95240 0.99403 0.99020 1.70073 1.21772 1.30501 1.35007 0.85653 0.77836 0.78454 0.80019 1.19488 1.21407 1.19269 1.21550 0.96754 0.96283 0.99532 1.21686 1.00674 1.00216 0.94281 1.20432 0.78865 0.83913 0.86294 1.90562 1.41571 1.26324 1.88255 0.93089 0.92507 0.89908 0.87965 0.93178 0.90042 0.92169 0.91687 0.89993 0.98425 0.98274 0.92990 0.90730 0.92244 0.87630 0.87906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.90 9.08 71.98 0.65 -3.25 16 2 C 0.13 3.16 3.21 44.99 0.14 3.31 16 3 C -0.16 -3.93 9.08 71.98 0.65 -3.28 16 4 N -0.60 -17.50 2.79 -802.62 -2.24 -19.74 16 5 C 0.12 3.74 5.56 86.50 0.48 4.22 16 6 C -0.09 -3.12 2.20 -10.70 -0.02 -3.14 16 7 H 0.06 2.35 8.12 -2.39 -0.02 2.34 16 8 C 0.04 1.80 4.43 29.85 0.13 1.93 16 9 C -0.53 -27.70 8.33 25.60 0.21 -27.48 16 10 H 0.06 3.16 7.16 -2.91 -0.02 3.14 16 11 C 0.00 0.14 5.46 84.65 0.46 0.61 16 12 N -0.93 -54.33 13.29 21.44 0.28 -54.05 16 13 Si 0.95 42.51 29.54 68.60 2.03 44.53 16 14 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 15 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 16 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 17 C -0.10 -3.46 5.23 30.73 0.16 -3.30 16 18 C -0.13 -3.77 6.03 29.70 0.18 -3.59 16 19 C 0.51 16.51 6.88 87.71 0.60 17.11 16 20 O -0.58 -20.93 12.47 -3.04 -0.04 -20.97 16 21 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 22 H 0.06 1.66 6.01 -2.39 -0.01 1.65 16 23 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 24 H 0.10 2.13 7.79 -2.38 -0.02 2.11 16 25 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 26 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.06 1.77 5.84 -2.38 -0.01 1.76 16 28 H 0.06 1.98 8.11 -2.39 -0.02 1.97 16 29 H 0.08 2.32 8.03 -2.39 -0.02 2.30 16 30 H 0.00 -0.13 8.14 -2.38 -0.02 -0.15 16 31 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 32 H 0.26 14.49 8.31 -92.70 -0.77 13.72 16 33 H 0.07 2.68 6.88 -2.39 -0.02 2.67 16 34 H 0.06 1.98 8.13 -2.39 -0.02 1.96 16 35 H 0.11 2.78 8.14 -2.39 -0.02 2.77 16 36 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 Total: -1.00 -61.13 284.41 4.73 -56.40 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: 1.03 Total: 10.69 kcal Atomic # 6 Polarization: -20.52 SS G_CDS: 3.66 Total: -16.86 kcal Atomic # 7 Polarization: -71.84 SS G_CDS: -1.95 Total: -73.79 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: -0.04 Total: -20.97 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.53 kcal Total: -61.13 4.73 -56.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260100262.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.786 kcal (2) G-P(sol) polarization free energy of solvation -61.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds