Wall clock time and date at job start Mon Mar 30 2020 02:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47488 * 2 1 4 4 C 1.50699 * 109.47294 * 119.99794 * 2 1 3 5 5 O 1.21281 * 119.99822 * 0.02562 * 4 2 1 6 6 N 1.34777 * 120.00330 * 179.97438 * 4 2 1 7 7 C 1.47067 * 136.05339 * 354.95280 * 6 4 2 8 8 C 1.53496 * 87.98560 * 206.86346 * 7 6 4 9 9 C 1.47066 * 136.05847 * 174.58381 * 6 4 2 10 10 H 1.09001 * 113.46842 * 267.91446 * 9 6 4 11 11 C 1.52998 * 113.46856 * 38.35925 * 9 6 4 12 12 C 1.53002 * 109.47352 * 183.92147 * 11 9 6 13 13 C 1.50694 * 109.47236 * 184.97296 * 12 11 9 14 14 H 1.07997 * 120.00024 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00101 * 180.02562 * 13 12 11 16 16 N 1.31520 * 119.99680 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00456 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47044 * 89.99669 * 17 15 13 19 19 H 1.48493 * 109.47559 * 210.00198 * 17 15 13 20 20 H 1.48503 * 109.46815 * 330.00121 * 17 15 13 21 21 H 1.09005 * 109.46969 * 300.00037 * 1 2 3 22 22 H 1.08998 * 109.47265 * 59.99660 * 1 2 3 23 23 H 1.08999 * 109.47222 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46969 * 239.99962 * 2 1 3 25 25 H 1.08996 * 109.46836 * 59.99445 * 3 2 1 26 26 H 1.08996 * 109.47409 * 180.02562 * 3 2 1 27 27 H 1.09007 * 109.46592 * 300.00349 * 3 2 1 28 28 H 1.08995 * 113.47154 * 321.64885 * 7 6 4 29 29 H 1.09006 * 113.46307 * 92.02602 * 7 6 4 30 30 H 1.08996 * 114.20567 * 87.52483 * 8 7 6 31 31 H 1.09002 * 114.20860 * 220.35228 * 8 7 6 32 32 H 1.09000 * 109.46812 * 303.92516 * 11 9 6 33 33 H 1.09011 * 109.46790 * 63.92091 * 11 9 6 34 34 H 1.09000 * 109.46597 * 304.97537 * 12 11 9 35 35 H 1.09000 * 109.46912 * 64.96680 * 12 11 9 36 36 H 0.97004 * 119.99482 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 1.2442 -1.1716 2.0286 6 7 3.3574 -0.8340 1.4435 7 6 4.5842 -0.5093 0.7003 8 6 5.2822 -1.6435 1.4636 9 6 4.2129 -1.3468 2.5242 10 1 4.5127 -0.5820 3.2407 11 6 3.6570 -2.6035 3.1970 12 6 4.5629 -3.0002 4.3645 13 6 4.0856 -4.3040 4.9503 14 1 3.2226 -4.8003 4.5315 15 6 4.7504 -4.8632 6.0208 16 7 5.8016 -4.2590 6.5305 17 14 4.1584 -6.4790 6.7475 18 1 4.8322 -7.6084 6.0577 19 1 4.4831 -6.5190 8.1959 20 1 2.6889 -6.5942 6.5663 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.6767 1.9563 0.8899 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 4.5039 -0.6923 -0.3712 29 1 4.9823 0.4791 0.9302 30 1 5.1868 -2.6227 0.9944 31 1 6.2997 -1.4109 1.7776 32 1 2.6523 -2.4023 3.5688 33 1 3.6203 -3.4174 2.4727 34 1 5.5863 -3.1153 4.0073 35 1 4.5303 -2.2244 5.1295 36 1 6.2696 -4.6527 7.2834 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260319948.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:57 Heat of formation + Delta-G solvation = -24.442179 kcal Electronic energy + Delta-G solvation = -15679.615456 eV Core-core repulsion = 13164.297835 eV Total energy + Delta-G solvation = -2515.317621 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.30275 -37.85813 -34.44385 -33.53374 -31.16774 -29.38400 -27.19184 -26.39277 -23.74586 -23.20237 -21.03734 -20.27564 -18.48166 -16.86610 -16.20150 -15.80139 -15.23301 -14.56284 -14.35605 -13.62326 -13.51831 -13.17032 -12.92186 -12.42822 -12.26777 -12.16999 -11.91288 -11.73493 -11.37092 -11.20873 -11.12597 -11.02096 -10.77226 -10.57265 -10.32679 -9.76458 -9.34008 -9.10860 -8.99880 -8.35814 -8.28540 -5.94932 -3.96045 2.89077 3.11216 3.36315 3.42132 3.47666 4.47177 4.51919 4.65146 4.79063 4.89334 5.14902 5.23925 5.36445 5.41196 5.47204 5.49882 5.61587 5.63147 5.73112 5.77860 6.00529 6.03391 6.06897 6.08497 6.22842 6.38969 6.76408 7.00977 7.19677 7.73770 7.87772 8.05344 8.07791 8.45486 8.51846 9.10624 9.67632 11.16531 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.041639 B = 0.005732 C = 0.005223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.280885 B = 4883.435539 C = 5359.597506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.110 4.110 3 C -0.142 4.142 4 C 0.539 3.461 5 O -0.533 6.533 6 N -0.645 5.645 7 C 0.097 3.903 8 C -0.148 4.148 9 C 0.134 3.866 10 H 0.088 0.912 11 C -0.114 4.114 12 C 0.026 3.974 13 C -0.516 4.516 14 H 0.054 0.946 15 C 0.056 3.944 16 N -0.897 5.897 17 Si 0.891 3.109 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 H 0.061 0.939 22 H 0.058 0.942 23 H 0.062 0.938 24 H 0.091 0.909 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.050 0.950 34 H 0.017 0.983 35 H 0.015 0.985 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.677 10.827 -15.221 18.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.132 4.132 3 C -0.200 4.200 4 C 0.328 3.672 5 O -0.409 6.409 6 N -0.381 5.381 7 C -0.026 4.026 8 C -0.186 4.186 9 C 0.032 3.968 10 H 0.106 0.894 11 C -0.152 4.152 12 C -0.012 4.012 13 C -0.554 4.554 14 H 0.072 0.928 15 C -0.144 4.144 16 N -0.537 5.537 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 H 0.080 0.920 22 H 0.077 0.923 23 H 0.081 0.919 24 H 0.109 0.891 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.113 0.887 31 H 0.107 0.893 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.035 0.965 35 H 0.033 0.967 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.233 10.591 -14.691 18.398 hybrid contribution -0.153 -0.812 0.446 0.939 sum -3.386 9.779 -14.245 17.607 Atomic orbital electron populations 1.21606 0.92658 1.02862 1.01806 1.21246 0.97989 0.97078 0.96866 1.21773 1.01360 0.94322 1.02507 1.20177 0.80011 0.79368 0.87652 1.90721 1.53974 1.48398 1.47852 1.49939 1.03429 1.62082 1.22691 1.22971 0.83266 0.98969 0.97383 1.23476 0.98820 0.98860 0.97432 1.22902 0.86473 0.97184 0.90259 0.89383 1.21855 1.01033 0.93289 0.99032 1.19036 0.94300 0.96237 0.91599 1.21253 1.13052 1.06447 1.14692 0.92756 1.25004 0.95058 0.97550 0.96820 1.69968 1.19700 1.39151 1.24904 0.86603 0.79208 0.84032 0.78250 1.20697 1.21240 1.19873 0.91952 0.92322 0.91914 0.89096 0.92204 0.92125 0.91734 0.90967 0.90158 0.88748 0.89347 0.91714 0.93076 0.96470 0.96688 0.93102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.49 8.48 37.16 0.32 -1.18 16 2 C -0.11 -1.29 3.12 -91.77 -0.29 -1.57 16 3 C -0.14 -1.32 9.08 37.16 0.34 -0.99 16 4 C 0.54 8.94 7.33 -10.99 -0.08 8.86 16 5 O -0.53 -11.32 15.37 5.56 0.09 -11.24 16 6 N -0.65 -10.03 3.49 -177.43 -0.62 -10.65 16 7 C 0.10 1.08 6.94 -8.50 -0.06 1.02 16 8 C -0.15 -2.00 8.02 -26.21 -0.21 -2.21 16 9 C 0.13 2.34 3.97 -72.39 -0.29 2.06 16 10 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 11 C -0.11 -2.56 4.87 -26.73 -0.13 -2.69 16 12 C 0.03 0.69 4.97 -27.88 -0.14 0.55 16 13 C -0.52 -15.24 9.11 -34.44 -0.31 -15.55 16 14 H 0.05 1.60 7.74 -52.49 -0.41 1.19 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 16 N -0.90 -27.38 13.29 55.43 0.74 -26.64 16 17 Si 0.89 22.36 29.54 -169.99 -5.02 17.34 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 21 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 22 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.06 0.78 8.10 -51.93 -0.42 0.36 16 24 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.52 6.47 -51.93 -0.34 0.19 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.08 0.74 8.01 -51.93 -0.42 0.32 16 30 H 0.09 1.33 7.95 -51.93 -0.41 0.91 16 31 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.06 1.62 7.06 -51.93 -0.37 1.25 16 33 H 0.05 1.16 7.90 -51.92 -0.41 0.75 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.01 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 297.25 15.07 4.48 4.48 Total: -1.00 -33.77 297.25 -7.42 -41.19 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: -6.13 Total: -4.33 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: -0.95 Total: -10.15 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: 0.12 Total: -37.29 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.09 Total: -11.24 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -33.77 -7.42 -41.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260319948.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.748 kcal (2) G-P(sol) polarization free energy of solvation -33.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds