Wall clock time and date at job start Mon Mar 30 2020 03:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50707 * 109.47049 * 2 1 4 4 O 1.21280 * 119.99800 * 359.97438 * 3 2 1 5 5 N 1.34778 * 119.99946 * 180.02562 * 3 2 1 6 6 C 1.50167 * 120.53694 * 354.51548 * 5 3 2 7 7 C 1.46234 * 107.53748 * 250.39020 * 6 5 3 8 8 C 1.52523 * 114.28077 * 301.59907 * 7 6 5 9 9 C 1.50133 * 105.42011 * 89.39856 * 8 7 6 10 10 C 1.54848 * 110.81446 * 262.32479 * 9 8 7 11 11 C 1.43432 * 120.53768 * 174.49701 * 5 3 2 12 12 H 1.08996 * 108.15994 * 210.16549 * 11 5 3 13 13 C 1.50699 * 108.15671 * 326.94588 * 11 5 3 14 14 H 1.07998 * 120.00133 * 95.03866 * 13 11 5 15 15 C 1.37879 * 119.99795 * 275.02972 * 13 11 5 16 16 N 1.31515 * 119.99752 * 0.02562 * 15 13 11 17 17 Si 1.86794 * 120.00064 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47025 * 90.00483 * 17 15 13 19 19 H 1.48503 * 109.47401 * 210.00378 * 17 15 13 20 20 H 1.48498 * 109.47331 * 330.00804 * 17 15 13 21 21 H 1.08996 * 109.47284 * 299.99932 * 1 2 3 22 22 H 1.09002 * 109.46930 * 60.00673 * 1 2 3 23 23 H 1.09003 * 109.47225 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47519 * 239.99881 * 2 1 3 25 25 H 1.09004 * 109.47280 * 119.99726 * 2 1 3 26 26 H 1.09006 * 109.84658 * 130.88489 * 6 5 3 27 27 H 1.08997 * 109.85088 * 9.90258 * 6 5 3 28 28 H 1.09003 * 108.52740 * 180.35388 * 7 6 5 29 29 H 1.09007 * 108.39541 * 62.74888 * 7 6 5 30 30 H 1.09004 * 110.24813 * 330.42939 * 8 7 6 31 31 H 1.08992 * 110.37224 * 208.43685 * 8 7 6 32 32 H 1.09003 * 109.20351 * 22.65913 * 9 8 7 33 33 H 1.08995 * 109.21182 * 141.97796 * 9 8 7 34 34 H 1.08993 * 109.35602 * 159.07334 * 10 9 8 35 35 H 1.08999 * 109.35471 * 278.66009 * 10 9 8 36 36 H 0.97001 * 119.99717 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2442 2.3427 -0.0005 5 7 3.3574 1.6672 -0.0005 6 6 4.3429 0.5408 0.1225 7 6 4.9627 0.6398 1.4433 8 6 5.6729 1.9640 1.7051 9 6 4.6286 2.8676 2.2938 10 6 4.0234 3.7902 1.2073 11 6 3.8492 3.0093 -0.1190 12 1 4.8155 2.9739 -0.6219 13 6 2.8963 3.7832 -0.9932 14 1 2.1108 4.3737 -0.5452 15 6 3.0273 3.7373 -2.3650 16 7 3.9836 3.0179 -2.9105 17 14 1.8466 4.6970 -3.4486 18 1 2.3914 6.0571 -3.6909 19 1 1.6804 3.9922 -4.7451 20 1 0.5295 4.8049 -2.7713 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8934 -0.5139 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 5.1052 0.6298 -0.6515 27 1 3.8269 -0.4145 0.0266 28 1 5.6869 -0.1681 1.5475 29 1 4.1872 0.5077 2.1980 30 1 6.0496 2.3811 0.7711 31 1 6.4910 1.8226 2.4113 32 1 3.8355 2.2615 2.7318 33 1 5.0823 3.4805 3.0726 34 1 3.0524 4.1544 1.5426 35 1 4.6879 4.6384 1.0426 36 1 4.0755 2.9853 -3.8755 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260324185.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:12 Heat of formation + Delta-G solvation = -41.062557 kcal Electronic energy + Delta-G solvation = -17002.328495 eV Core-core repulsion = 14486.290161 eV Total energy + Delta-G solvation = -2516.038334 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.22971 -36.66237 -33.37696 -32.73320 -31.61141 -30.94105 -26.78204 -25.17134 -23.97612 -22.41900 -21.06509 -19.32832 -17.60277 -16.85738 -15.49784 -14.88083 -14.79766 -14.25476 -14.14384 -13.65211 -13.19753 -12.91609 -12.45374 -12.19936 -11.89721 -11.57483 -11.38799 -11.19612 -10.86374 -10.79948 -10.67127 -10.49889 -10.40084 -10.16392 -9.89578 -9.84906 -9.26857 -9.03512 -8.61773 -7.96929 -7.09613 -5.93721 -3.86843 3.38249 3.44994 3.56660 4.00943 4.27196 4.57075 5.20005 5.33415 5.47613 5.50836 5.65919 5.69895 5.72223 5.91311 6.01590 6.12451 6.17274 6.21231 6.24967 6.38912 6.47083 6.49707 6.57367 6.69582 6.72098 6.80378 6.92179 7.02383 7.11974 7.57581 8.04380 8.17493 8.42652 9.00432 9.17674 9.70247 9.75315 11.14983 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.022143 B = 0.013446 C = 0.010224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.198172 B = 2081.898616 C = 2737.976205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.149 4.149 3 C 0.509 3.491 4 O -0.524 6.524 5 N -0.579 5.579 6 C 0.105 3.895 7 C -0.131 4.131 8 C -0.116 4.116 9 C -0.118 4.118 10 C -0.118 4.118 11 C 0.251 3.749 12 H 0.060 0.940 13 C -0.474 4.474 14 H 0.063 0.937 15 C 0.060 3.940 16 N -0.897 5.897 17 Si 0.891 3.109 18 H -0.283 1.283 19 H -0.290 1.290 20 H -0.272 1.272 21 H 0.056 0.944 22 H 0.059 0.941 23 H 0.047 0.953 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.040 0.960 34 H 0.051 0.949 35 H 0.054 0.946 36 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.834 -6.960 6.988 10.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.189 4.189 3 C 0.295 3.705 4 O -0.400 6.400 5 N -0.312 5.312 6 C -0.017 4.017 7 C -0.169 4.169 8 C -0.154 4.154 9 C -0.156 4.156 10 C -0.157 4.157 11 C 0.149 3.851 12 H 0.078 0.922 13 C -0.513 4.513 14 H 0.081 0.919 15 C -0.141 4.141 16 N -0.537 5.537 17 Si 0.719 3.281 18 H -0.210 1.210 19 H -0.216 1.216 20 H -0.196 1.196 21 H 0.075 0.925 22 H 0.078 0.922 23 H 0.066 0.934 24 H 0.097 0.903 25 H 0.092 0.908 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.476 -6.491 6.817 9.528 hybrid contribution -0.501 0.256 -0.763 0.948 sum 0.975 -6.235 6.054 8.745 Atomic orbital electron populations 1.21459 0.94341 1.00027 1.03006 1.21722 0.97564 0.97238 1.02420 1.20129 0.82839 0.89878 0.77637 1.90623 1.55014 1.45784 1.48549 1.48852 1.03971 1.07180 1.71184 1.20905 0.93395 0.90826 0.96619 1.20829 0.99368 0.97896 0.98787 1.21025 0.97228 0.95698 1.01425 1.21595 0.97496 0.98303 0.98188 1.22639 0.99373 0.97531 0.96150 1.18499 0.97310 0.78900 0.90343 0.92221 1.21386 1.13370 1.26125 0.90425 0.91919 1.24961 0.95331 0.95520 0.98295 1.69936 1.32133 1.40929 1.10701 0.86591 0.82231 0.79666 0.79599 1.20951 1.21640 1.19640 0.92519 0.92218 0.93436 0.90277 0.90755 0.91137 0.91346 0.92830 0.92541 0.90607 0.92845 0.93017 0.94110 0.93026 0.92688 0.93330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.15 9.20 37.16 0.34 -1.81 16 2 C -0.15 -2.60 4.78 -27.88 -0.13 -2.74 16 3 C 0.51 11.66 7.30 -10.98 -0.08 11.58 16 4 O -0.52 -14.09 13.46 5.56 0.07 -14.02 16 5 N -0.58 -12.83 2.50 -169.17 -0.42 -13.25 16 6 C 0.11 1.85 5.91 -5.21 -0.03 1.82 16 7 C -0.13 -1.97 5.20 -30.19 -0.16 -2.12 16 8 C -0.12 -1.85 5.76 -28.40 -0.16 -2.02 16 9 C -0.12 -2.07 5.65 -27.18 -0.15 -2.22 16 10 C -0.12 -2.53 5.71 -24.76 -0.14 -2.67 16 11 C 0.25 6.15 1.61 -69.70 -0.11 6.03 16 12 H 0.06 1.58 6.17 -51.93 -0.32 1.26 16 13 C -0.47 -13.45 5.62 -34.44 -0.19 -13.64 16 14 H 0.06 1.90 7.14 -52.49 -0.37 1.52 16 15 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 16 N -0.90 -25.92 12.86 55.43 0.71 -25.21 16 17 Si 0.89 22.88 29.54 -169.99 -5.02 17.86 16 18 H -0.28 -7.09 7.11 56.52 0.40 -6.68 16 19 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 20 H -0.27 -7.18 7.11 56.52 0.40 -6.77 16 21 H 0.06 0.95 8.10 -51.93 -0.42 0.53 16 22 H 0.06 1.09 8.10 -51.93 -0.42 0.67 16 23 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.08 1.32 7.88 -51.93 -0.41 0.91 16 25 H 0.07 1.10 7.80 -51.93 -0.40 0.69 16 26 H 0.07 1.32 8.13 -51.93 -0.42 0.90 16 27 H 0.07 1.04 6.08 -51.93 -0.32 0.72 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.85 6.93 -51.93 -0.36 0.49 16 30 H 0.08 1.35 6.29 -51.93 -0.33 1.03 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.92 6.82 -51.93 -0.35 0.57 16 33 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.05 1.19 7.91 -51.93 -0.41 0.78 16 35 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 278.22 15.07 4.19 4.19 Total: -1.00 -31.26 278.22 -7.17 -38.44 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -5.79 Total: -1.85 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: -0.92 Total: -6.16 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: 0.29 Total: -38.46 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: 0.07 Total: -14.02 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -31.26 -7.17 -38.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260324185.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.626 kcal (2) G-P(sol) polarization free energy of solvation -31.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds