Wall clock time and date at job start Mon Mar 30 2020 03:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50707 * 109.47049 * 2 1 4 4 O 1.21280 * 119.99800 * 359.97438 * 3 2 1 5 5 N 1.34778 * 119.99946 * 180.02562 * 3 2 1 6 6 C 1.50167 * 120.53694 * 354.51548 * 5 3 2 7 7 C 1.46234 * 107.53748 * 250.39020 * 6 5 3 8 8 C 1.52523 * 114.28077 * 301.59907 * 7 6 5 9 9 C 1.50133 * 105.42011 * 89.39856 * 8 7 6 10 10 C 1.54848 * 110.81446 * 262.32479 * 9 8 7 11 11 C 1.43432 * 120.53768 * 174.49701 * 5 3 2 12 12 H 1.08996 * 108.15994 * 210.16549 * 11 5 3 13 13 C 1.50699 * 108.15671 * 326.94588 * 11 5 3 14 14 H 1.07998 * 120.00133 * 95.03866 * 13 11 5 15 15 C 1.37879 * 119.99795 * 275.02972 * 13 11 5 16 16 N 1.31515 * 119.99752 * 0.02562 * 15 13 11 17 17 Si 1.86794 * 120.00064 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47025 * 90.00483 * 17 15 13 19 19 H 1.48503 * 109.47401 * 210.00378 * 17 15 13 20 20 H 1.48498 * 109.47331 * 330.00804 * 17 15 13 21 21 H 1.08996 * 109.47284 * 299.99932 * 1 2 3 22 22 H 1.09002 * 109.46930 * 60.00673 * 1 2 3 23 23 H 1.09003 * 109.47225 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47519 * 239.99881 * 2 1 3 25 25 H 1.09004 * 109.47280 * 119.99726 * 2 1 3 26 26 H 1.09006 * 109.84658 * 130.88489 * 6 5 3 27 27 H 1.08997 * 109.85088 * 9.90258 * 6 5 3 28 28 H 1.09003 * 108.52740 * 180.35388 * 7 6 5 29 29 H 1.09007 * 108.39541 * 62.74888 * 7 6 5 30 30 H 1.09004 * 110.24813 * 330.42939 * 8 7 6 31 31 H 1.08992 * 110.37224 * 208.43685 * 8 7 6 32 32 H 1.09003 * 109.20351 * 22.65913 * 9 8 7 33 33 H 1.08995 * 109.21182 * 141.97796 * 9 8 7 34 34 H 1.08993 * 109.35602 * 159.07334 * 10 9 8 35 35 H 1.08999 * 109.35471 * 278.66009 * 10 9 8 36 36 H 0.97001 * 119.99717 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2442 2.3427 -0.0005 5 7 3.3574 1.6672 -0.0005 6 6 4.3429 0.5408 0.1225 7 6 4.9627 0.6398 1.4433 8 6 5.6729 1.9640 1.7051 9 6 4.6286 2.8676 2.2938 10 6 4.0234 3.7902 1.2073 11 6 3.8492 3.0093 -0.1190 12 1 4.8155 2.9739 -0.6219 13 6 2.8963 3.7832 -0.9932 14 1 2.1108 4.3737 -0.5452 15 6 3.0273 3.7373 -2.3650 16 7 3.9836 3.0179 -2.9105 17 14 1.8466 4.6970 -3.4486 18 1 2.3914 6.0571 -3.6909 19 1 1.6804 3.9922 -4.7451 20 1 0.5295 4.8049 -2.7713 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8934 -0.5139 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 5.1052 0.6298 -0.6515 27 1 3.8269 -0.4145 0.0266 28 1 5.6869 -0.1681 1.5475 29 1 4.1872 0.5077 2.1980 30 1 6.0496 2.3811 0.7711 31 1 6.4910 1.8226 2.4113 32 1 3.8355 2.2615 2.7318 33 1 5.0823 3.4805 3.0726 34 1 3.0524 4.1544 1.5426 35 1 4.6879 4.6384 1.0426 36 1 4.0755 2.9853 -3.8755 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260324185.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:11 Heat of formation + Delta-G solvation = -60.422885 kcal Electronic energy + Delta-G solvation = -17003.168022 eV Core-core repulsion = 14486.290161 eV Total energy + Delta-G solvation = -2516.877861 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.90970 -38.27441 -35.26572 -34.37049 -33.21968 -32.65976 -28.55087 -26.84633 -25.63577 -24.07516 -22.53521 -20.83014 -19.38520 -18.77269 -17.16593 -16.76461 -16.42926 -16.08265 -15.56874 -15.25113 -14.75803 -14.50604 -14.16645 -13.85935 -13.49151 -13.20567 -12.91358 -12.80410 -12.75779 -12.57427 -12.44297 -12.08452 -11.89187 -11.68120 -11.54740 -11.28725 -11.03373 -10.92784 -10.73129 -9.91479 -8.89272 -8.11973 -6.09024 1.30198 1.32215 1.46092 2.27043 2.43005 2.63040 3.35340 3.90616 3.92177 4.19206 4.28977 4.32547 4.36231 4.49420 4.55499 4.70501 4.75508 4.89905 4.94552 4.99646 5.07541 5.12866 5.19216 5.25297 5.34231 5.39257 5.40286 5.52614 5.58481 5.69909 5.80561 6.20061 6.53333 6.91770 7.25455 7.49459 7.98776 8.94937 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.022143 B = 0.013446 C = 0.010224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.198172 B = 2081.898616 C = 2737.976205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.138 4.138 3 C 0.490 3.510 4 O -0.579 6.579 5 N -0.586 5.586 6 C 0.104 3.896 7 C -0.129 4.129 8 C -0.115 4.115 9 C -0.108 4.108 10 C -0.115 4.115 11 C 0.258 3.742 12 H 0.037 0.963 13 C -0.484 4.484 14 H 0.030 0.970 15 C 0.019 3.981 16 N -0.916 5.916 17 Si 0.935 3.065 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.289 1.289 21 H 0.046 0.954 22 H 0.030 0.970 23 H 0.089 0.911 24 H 0.092 0.908 25 H 0.113 0.887 26 H 0.055 0.945 27 H 0.100 0.900 28 H 0.092 0.908 29 H 0.063 0.937 30 H 0.051 0.949 31 H 0.087 0.913 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.024 0.976 35 H 0.052 0.948 36 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.702 -9.272 8.167 12.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.178 4.178 3 C 0.279 3.721 4 O -0.459 6.459 5 N -0.318 5.318 6 C -0.017 4.017 7 C -0.167 4.167 8 C -0.153 4.153 9 C -0.146 4.146 10 C -0.155 4.155 11 C 0.155 3.845 12 H 0.055 0.945 13 C -0.524 4.524 14 H 0.048 0.952 15 C -0.180 4.180 16 N -0.558 5.558 17 Si 0.763 3.237 18 H -0.196 1.196 19 H -0.207 1.207 20 H -0.215 1.215 21 H 0.065 0.935 22 H 0.050 0.950 23 H 0.107 0.893 24 H 0.110 0.890 25 H 0.131 0.869 26 H 0.073 0.927 27 H 0.118 0.882 28 H 0.111 0.889 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.106 0.894 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.043 0.957 35 H 0.071 0.929 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.376 -8.826 7.996 12.144 hybrid contribution -0.767 0.984 -1.085 1.654 sum 1.609 -7.842 6.911 10.575 Atomic orbital electron populations 1.21452 0.93759 1.02087 1.01191 1.21707 0.98016 0.93318 1.04762 1.21168 0.82603 0.91928 0.76448 1.90597 1.56237 1.48044 1.50991 1.48716 1.05008 1.07570 1.70461 1.21188 0.92312 0.90292 0.97876 1.20777 1.00282 0.98610 0.97021 1.21036 0.97653 0.95628 1.00956 1.21529 0.97912 0.98048 0.97071 1.22521 0.98354 0.98175 0.96408 1.18246 0.94909 0.80263 0.91044 0.94521 1.21487 1.12958 1.26568 0.91350 0.95152 1.25459 0.96685 0.96635 0.99201 1.69992 1.33017 1.41997 1.10749 0.85898 0.79888 0.79497 0.78406 1.19625 1.20702 1.21521 0.93463 0.95047 0.89259 0.88967 0.86902 0.92655 0.88192 0.88940 0.91805 0.93074 0.89417 0.93063 0.91856 0.95681 0.92884 0.93310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.95 9.20 71.98 0.66 -3.29 16 2 C -0.14 -4.45 4.78 29.85 0.14 -4.31 16 3 C 0.49 22.35 7.30 87.66 0.64 22.99 16 4 O -0.58 -32.21 13.46 -3.03 -0.04 -32.26 16 5 N -0.59 -25.72 2.50 -807.53 -2.02 -27.74 16 6 C 0.10 3.40 5.91 83.58 0.49 3.89 16 7 C -0.13 -3.37 5.20 28.35 0.15 -3.23 16 8 C -0.12 -3.34 5.76 29.51 0.17 -3.17 16 9 C -0.11 -3.58 5.65 30.30 0.17 -3.41 16 10 C -0.12 -5.06 5.71 31.87 0.18 -4.88 16 11 C 0.26 12.98 1.61 45.46 0.07 13.05 16 12 H 0.04 2.01 6.17 -2.39 -0.01 1.99 16 13 C -0.48 -28.66 5.62 25.60 0.14 -28.51 16 14 H 0.03 1.95 7.14 -2.91 -0.02 1.93 16 15 C 0.02 1.09 5.46 84.65 0.46 1.56 16 16 N -0.92 -53.90 12.86 21.45 0.28 -53.62 16 17 Si 0.94 48.26 29.54 68.60 2.03 50.28 16 18 H -0.27 -13.29 7.11 99.48 0.71 -12.59 16 19 H -0.28 -14.00 7.11 99.48 0.71 -13.30 16 20 H -0.29 -15.62 7.11 99.48 0.71 -14.92 16 21 H 0.05 1.53 8.10 -2.39 -0.02 1.51 16 22 H 0.03 1.12 8.10 -2.39 -0.02 1.10 16 23 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 24 H 0.09 2.77 7.88 -2.38 -0.02 2.75 16 25 H 0.11 2.79 7.80 -2.38 -0.02 2.77 16 26 H 0.05 1.98 8.13 -2.38 -0.02 1.96 16 27 H 0.10 2.60 6.08 -2.39 -0.01 2.59 16 28 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.06 1.63 6.93 -2.38 -0.02 1.61 16 30 H 0.05 1.76 6.29 -2.39 -0.01 1.74 16 31 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.05 1.71 6.82 -2.39 -0.02 1.69 16 33 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.02 1.19 7.91 -2.39 -0.02 1.17 16 35 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.26 14.57 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -71.60 278.22 4.57 -67.03 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: 1.04 Total: 5.61 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: 3.29 Total: -9.31 kcal Atomic # 7 Polarization: -79.62 SS G_CDS: -1.74 Total: -81.36 kcal Atomic # 8 Polarization: -32.21 SS G_CDS: -0.04 Total: -32.26 kcal Atomic # 14 Polarization: 48.26 SS G_CDS: 2.03 Total: 50.28 kcal Total: -71.60 4.57 -67.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260324185.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.609 kcal (2) G-P(sol) polarization free energy of solvation -71.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds