Wall clock time and date at job start Mon Mar 30 2020 02:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47514 * 2 1 4 4 H 1.09000 * 109.47702 * 178.57612 * 3 2 1 5 5 C 1.53002 * 109.47103 * 298.58211 * 3 2 1 6 6 C 1.50697 * 109.46741 * 294.54338 * 5 3 2 7 7 H 1.07997 * 120.00631 * 357.37395 * 6 5 3 8 8 C 1.37883 * 119.99826 * 177.36970 * 6 5 3 9 9 N 1.31514 * 119.99942 * 180.02562 * 8 6 5 10 10 Si 1.86803 * 120.00029 * 0.02562 * 8 6 5 11 11 H 1.48492 * 109.47025 * 89.99827 * 10 8 6 12 12 H 1.48493 * 109.47133 * 209.99971 * 10 8 6 13 13 H 1.48499 * 109.47000 * 329.99751 * 10 8 6 14 14 C 1.53001 * 109.46951 * 58.57752 * 3 2 1 15 15 C 1.53950 * 113.74237 * 156.67781 * 14 3 2 16 16 N 1.47585 * 86.11675 * 222.05098 * 15 14 3 17 17 C 1.34777 * 134.48723 * 204.64082 * 16 15 14 18 18 C 1.50697 * 120.00226 * 359.97438 * 17 16 15 19 19 O 1.21284 * 119.99660 * 179.97438 * 17 16 15 20 20 C 1.47576 * 91.01601 * 24.63845 * 16 15 14 21 21 H 1.08998 * 109.47092 * 305.51509 * 1 2 3 22 22 H 1.09000 * 109.46894 * 65.51009 * 1 2 3 23 23 H 1.09005 * 109.47529 * 185.50945 * 1 2 3 24 24 H 1.09006 * 109.46837 * 120.00232 * 2 1 3 25 25 H 1.08997 * 109.46981 * 239.99524 * 2 1 3 26 26 H 1.09001 * 109.47161 * 54.54514 * 5 3 2 27 27 H 1.09000 * 109.47477 * 174.54727 * 5 3 2 28 28 H 0.96999 * 119.99642 * 180.02562 * 9 8 6 29 29 H 1.09000 * 112.94763 * 288.40924 * 14 3 2 30 30 H 1.09009 * 113.76585 * 336.34723 * 15 14 3 31 31 H 1.08992 * 113.77212 * 107.74401 * 15 14 3 32 32 H 1.08994 * 109.47296 * 59.99981 * 18 17 16 33 33 H 1.09000 * 109.47110 * 179.97438 * 18 17 16 34 34 H 1.09000 * 109.46831 * 299.99521 * 18 17 16 35 35 H 1.08997 * 113.76764 * 221.06257 * 20 16 15 36 36 H 1.08994 * 113.87345 * 89.67503 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1298 1.4425 0.0255 5 6 1.5595 2.1533 -1.2667 6 6 2.1975 1.5151 -2.4736 7 1 2.9100 0.7134 -2.3474 8 6 1.8714 1.9545 -3.7392 9 7 2.4278 1.3972 -4.7925 10 14 0.6393 3.3415 -3.9577 11 1 1.3543 4.6430 -3.9596 12 1 -0.0773 3.1686 -5.2467 13 1 -0.3385 3.3156 -2.8404 14 6 1.5011 2.1739 1.2310 15 6 2.3503 3.3868 1.6525 16 7 2.1510 2.9182 3.0377 17 6 2.1666 3.5124 4.2472 18 6 2.4378 4.9907 4.3571 19 8 1.9624 2.8574 5.2473 20 6 1.9277 1.5376 2.5663 21 1 -0.3633 0.5970 0.8365 22 1 -0.3633 0.4260 -0.9352 23 1 -0.3634 -1.0229 0.0987 24 1 1.8933 -0.5139 0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 0.4753 2.0690 -1.3415 27 1 1.8398 3.2057 -1.2214 28 1 2.1986 1.7067 -5.6828 29 1 0.4336 2.3847 1.1665 30 1 3.3860 3.3361 1.3163 31 1 1.8799 4.3471 1.4415 32 1 1.6780 5.5417 3.8028 33 1 2.4097 5.2884 5.4052 34 1 3.4215 5.2114 3.9426 35 1 1.1198 1.0216 3.0850 36 1 2.8381 0.9421 2.4981 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260394904.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:36 Heat of formation + Delta-G solvation = -24.206011 kcal Electronic energy + Delta-G solvation = -15841.683678 eV Core-core repulsion = 13326.376298 eV Total energy + Delta-G solvation = -2515.307380 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.28357 -38.04616 -35.34546 -32.41216 -30.81422 -29.41218 -28.14683 -25.96858 -25.11499 -22.68196 -21.25399 -18.88449 -18.48934 -16.97710 -16.64742 -15.67132 -15.54252 -14.76306 -14.18508 -13.96729 -13.72228 -13.04423 -12.72522 -12.62948 -12.48020 -12.25142 -12.01563 -11.77406 -11.69176 -11.45013 -11.00520 -10.68842 -10.55987 -10.12370 -9.99353 -9.70758 -9.62026 -9.30096 -9.06335 -8.59333 -8.55244 -6.06112 -4.03270 2.65636 2.93644 3.27074 3.35982 3.37490 4.42361 4.49495 4.65650 5.10479 5.10898 5.23259 5.27957 5.31407 5.51233 5.54501 5.66284 5.68774 5.72985 5.80843 5.86831 5.95908 5.99149 6.33363 6.39853 6.48808 6.65757 6.73943 6.95994 7.06366 7.25654 7.40991 7.77358 7.79604 8.18422 8.52049 8.99473 9.56744 11.07340 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.035138 B = 0.006720 C = 0.006097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.659165 B = 4165.432122 C = 4591.416287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.108 4.108 3 C -0.064 4.064 4 H 0.066 0.934 5 C -0.010 4.010 6 C -0.513 4.513 7 H 0.073 0.927 8 C 0.066 3.934 9 N -0.904 5.904 10 Si 0.875 3.125 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.265 1.265 14 C -0.114 4.114 15 C 0.104 3.896 16 N -0.646 5.646 17 C 0.528 3.472 18 C -0.168 4.168 19 O -0.559 6.559 20 C 0.110 3.890 21 H 0.044 0.956 22 H 0.064 0.936 23 H 0.040 0.960 24 H 0.041 0.959 25 H 0.076 0.924 26 H 0.022 0.978 27 H 0.009 0.991 28 H 0.262 0.738 29 H 0.098 0.902 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.584 4.679 12.086 13.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.146 4.146 3 C -0.083 4.083 4 H 0.085 0.915 5 C -0.047 4.047 6 C -0.551 4.551 7 H 0.091 0.909 8 C -0.135 4.135 9 N -0.544 5.544 10 Si 0.703 3.297 11 H -0.204 1.204 12 H -0.216 1.216 13 H -0.190 1.190 14 C -0.133 4.133 15 C -0.018 4.018 16 N -0.381 5.381 17 C 0.319 3.681 18 C -0.227 4.227 19 O -0.438 6.438 20 C -0.012 4.012 21 H 0.063 0.937 22 H 0.083 0.917 23 H 0.059 0.941 24 H 0.060 0.940 25 H 0.095 0.905 26 H 0.040 0.960 27 H 0.027 0.973 28 H 0.072 0.928 29 H 0.116 0.884 30 H 0.109 0.891 31 H 0.098 0.902 32 H 0.104 0.896 33 H 0.107 0.893 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.687 4.450 12.632 13.499 hybrid contribution -0.540 0.831 -0.389 1.065 sum -2.227 5.280 12.243 13.518 Atomic orbital electron populations 1.21808 0.96849 1.00145 1.01875 1.21408 0.95530 0.96462 1.01165 1.21051 0.99432 0.94630 0.93147 0.91530 1.19667 0.96912 0.95203 0.92964 1.21115 1.25313 1.19566 0.89125 0.90906 1.25017 0.95937 0.96419 0.96091 1.69911 1.43817 1.42409 0.98228 0.86852 0.82270 0.82987 0.77589 1.20442 1.21552 1.18982 1.23322 1.00456 0.95008 0.94518 1.23417 1.00989 0.99393 0.78002 1.50213 1.70214 1.12019 1.05676 1.20489 0.76099 0.90233 0.81302 1.21846 1.03788 0.92294 1.04799 1.90696 1.50756 1.66936 1.35442 1.23267 1.00765 0.84833 0.92354 0.93740 0.91725 0.94073 0.93997 0.90508 0.95957 0.97284 0.92819 0.88360 0.89143 0.90211 0.89588 0.89252 0.89571 0.90599 0.89740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.26 37.16 0.34 -2.01 16 2 C -0.11 -1.79 5.33 -26.74 -0.14 -1.93 16 3 C -0.06 -1.08 1.87 -90.62 -0.17 -1.25 16 4 H 0.07 1.15 7.94 -51.93 -0.41 0.74 16 5 C -0.01 -0.22 3.34 -27.88 -0.09 -0.31 16 6 C -0.51 -13.47 8.89 -34.44 -0.31 -13.77 16 7 H 0.07 2.07 7.44 -52.49 -0.39 1.68 16 8 C 0.07 1.83 5.47 -17.82 -0.10 1.74 16 9 N -0.90 -26.94 13.96 55.43 0.77 -26.17 16 10 Si 0.88 20.75 27.52 -169.99 -4.68 16.07 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.27 -5.98 6.47 56.52 0.37 -5.61 16 14 C -0.11 -1.60 2.45 -89.69 -0.22 -1.82 16 15 C 0.10 1.30 8.17 -2.97 -0.02 1.28 16 16 N -0.65 -8.87 3.61 -178.34 -0.64 -9.52 16 17 C 0.53 7.64 8.17 -10.99 -0.09 7.55 16 18 C -0.17 -1.64 10.07 36.00 0.36 -1.28 16 19 O -0.56 -10.37 17.81 5.55 0.10 -10.27 16 20 C 0.11 1.49 7.49 -2.98 -0.02 1.47 16 21 H 0.04 0.63 6.42 -51.93 -0.33 0.29 16 22 H 0.06 1.15 6.64 -51.93 -0.34 0.80 16 23 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.04 0.60 7.48 -51.93 -0.39 0.21 16 25 H 0.08 1.47 7.00 -51.93 -0.36 1.11 16 26 H 0.02 0.48 5.19 -51.93 -0.27 0.21 16 27 H 0.01 0.19 7.70 -51.93 -0.40 -0.21 16 28 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.10 1.40 7.13 -51.93 -0.37 1.03 16 30 H 0.09 1.08 7.96 -51.92 -0.41 0.67 16 31 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 0.82 8.12 -51.93 -0.42 0.40 16 34 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.08 1.10 8.06 -51.93 -0.42 0.68 16 LS Contribution 290.17 15.07 4.37 4.37 Total: -1.00 -31.27 290.17 -6.34 -37.62 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -5.81 Total: -1.78 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: -0.46 Total: -10.32 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: 0.13 Total: -35.68 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.10 Total: -10.27 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.68 Total: 16.07 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.27 -6.34 -37.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260394904.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.411 kcal (2) G-P(sol) polarization free energy of solvation -31.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds