Wall clock time and date at job start Mon Mar 30 2020 02:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47514 * 2 1 4 4 H 1.09000 * 109.47702 * 178.57612 * 3 2 1 5 5 C 1.53002 * 109.47103 * 298.58211 * 3 2 1 6 6 C 1.50697 * 109.46741 * 294.54338 * 5 3 2 7 7 H 1.07997 * 120.00631 * 357.37395 * 6 5 3 8 8 C 1.37883 * 119.99826 * 177.36970 * 6 5 3 9 9 N 1.31514 * 119.99942 * 180.02562 * 8 6 5 10 10 Si 1.86803 * 120.00029 * 0.02562 * 8 6 5 11 11 H 1.48492 * 109.47025 * 89.99827 * 10 8 6 12 12 H 1.48493 * 109.47133 * 209.99971 * 10 8 6 13 13 H 1.48499 * 109.47000 * 329.99751 * 10 8 6 14 14 C 1.53001 * 109.46951 * 58.57752 * 3 2 1 15 15 C 1.53950 * 113.74237 * 156.67781 * 14 3 2 16 16 N 1.47585 * 86.11675 * 222.05098 * 15 14 3 17 17 C 1.34777 * 134.48723 * 204.64082 * 16 15 14 18 18 C 1.50697 * 120.00226 * 359.97438 * 17 16 15 19 19 O 1.21284 * 119.99660 * 179.97438 * 17 16 15 20 20 C 1.47576 * 91.01601 * 24.63845 * 16 15 14 21 21 H 1.08998 * 109.47092 * 305.51509 * 1 2 3 22 22 H 1.09000 * 109.46894 * 65.51009 * 1 2 3 23 23 H 1.09005 * 109.47529 * 185.50945 * 1 2 3 24 24 H 1.09006 * 109.46837 * 120.00232 * 2 1 3 25 25 H 1.08997 * 109.46981 * 239.99524 * 2 1 3 26 26 H 1.09001 * 109.47161 * 54.54514 * 5 3 2 27 27 H 1.09000 * 109.47477 * 174.54727 * 5 3 2 28 28 H 0.96999 * 119.99642 * 180.02562 * 9 8 6 29 29 H 1.09000 * 112.94763 * 288.40924 * 14 3 2 30 30 H 1.09009 * 113.76585 * 336.34723 * 15 14 3 31 31 H 1.08992 * 113.77212 * 107.74401 * 15 14 3 32 32 H 1.08994 * 109.47296 * 59.99981 * 18 17 16 33 33 H 1.09000 * 109.47110 * 179.97438 * 18 17 16 34 34 H 1.09000 * 109.46831 * 299.99521 * 18 17 16 35 35 H 1.08997 * 113.76764 * 221.06257 * 20 16 15 36 36 H 1.08994 * 113.87345 * 89.67503 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1298 1.4425 0.0255 5 6 1.5595 2.1533 -1.2667 6 6 2.1975 1.5151 -2.4736 7 1 2.9100 0.7134 -2.3474 8 6 1.8714 1.9545 -3.7392 9 7 2.4278 1.3972 -4.7925 10 14 0.6393 3.3415 -3.9577 11 1 1.3543 4.6430 -3.9596 12 1 -0.0773 3.1686 -5.2467 13 1 -0.3385 3.3156 -2.8404 14 6 1.5011 2.1739 1.2310 15 6 2.3503 3.3868 1.6525 16 7 2.1510 2.9182 3.0377 17 6 2.1666 3.5124 4.2472 18 6 2.4378 4.9907 4.3571 19 8 1.9624 2.8574 5.2473 20 6 1.9277 1.5376 2.5663 21 1 -0.3633 0.5970 0.8365 22 1 -0.3633 0.4260 -0.9352 23 1 -0.3634 -1.0229 0.0987 24 1 1.8933 -0.5139 0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 0.4753 2.0690 -1.3415 27 1 1.8398 3.2057 -1.2214 28 1 2.1986 1.7067 -5.6828 29 1 0.4336 2.3847 1.1665 30 1 3.3860 3.3361 1.3163 31 1 1.8799 4.3471 1.4415 32 1 1.6780 5.5417 3.8028 33 1 2.4097 5.2884 5.4052 34 1 3.4215 5.2114 3.9426 35 1 1.1198 1.0216 3.0850 36 1 2.8381 0.9421 2.4981 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260394904.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:36 Heat of formation + Delta-G solvation = -44.102893 kcal Electronic energy + Delta-G solvation = -15842.546471 eV Core-core repulsion = 13326.376298 eV Total energy + Delta-G solvation = -2516.170173 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.39538 -39.25642 -36.76498 -34.39655 -31.82796 -30.98205 -29.34437 -27.00308 -26.60085 -24.19914 -22.69574 -19.94883 -19.81895 -18.80053 -17.89309 -16.79310 -16.67134 -16.28045 -15.87992 -15.28679 -14.99629 -14.52397 -14.13702 -13.67351 -13.57010 -13.39431 -13.23007 -13.13132 -13.04403 -12.85645 -12.42170 -12.18747 -12.04093 -11.69888 -11.57484 -11.23669 -11.03083 -10.83458 -10.67403 -10.59761 -9.70021 -8.18673 -6.19517 1.40841 1.43673 1.53731 1.59694 1.91974 2.43667 3.18172 3.46420 3.64149 3.97623 4.11595 4.35212 4.38464 4.45614 4.53359 4.56842 4.63938 4.64723 4.71419 4.74758 4.83625 5.03263 5.04871 5.09019 5.12376 5.28491 5.35995 5.52748 5.60030 5.68415 5.81106 5.82658 6.42202 6.75183 6.89243 7.11131 7.43832 8.98279 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.035138 B = 0.006720 C = 0.006097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.659165 B = 4165.432122 C = 4591.416287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.108 4.108 3 C -0.056 4.056 4 H 0.059 0.941 5 C -0.007 4.007 6 C -0.509 4.509 7 H 0.033 0.967 8 C 0.000 4.000 9 N -0.958 5.958 10 Si 0.941 3.059 11 H -0.267 1.267 12 H -0.295 1.295 13 H -0.241 1.241 14 C -0.107 4.107 15 C 0.109 3.891 16 N -0.646 5.646 17 C 0.519 3.481 18 C -0.160 4.160 19 O -0.609 6.609 20 C 0.107 3.893 21 H 0.065 0.935 22 H 0.040 0.960 23 H 0.053 0.947 24 H 0.066 0.934 25 H 0.039 0.961 26 H 0.025 0.975 27 H 0.021 0.979 28 H 0.261 0.739 29 H 0.104 0.896 30 H 0.097 0.903 31 H 0.103 0.897 32 H 0.107 0.893 33 H 0.092 0.908 34 H 0.105 0.895 35 H 0.075 0.925 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.592 6.740 13.540 15.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.146 4.146 3 C -0.075 4.075 4 H 0.078 0.922 5 C -0.045 4.045 6 C -0.548 4.548 7 H 0.052 0.948 8 C -0.195 4.195 9 N -0.600 5.600 10 Si 0.766 3.234 11 H -0.193 1.193 12 H -0.222 1.222 13 H -0.164 1.164 14 C -0.126 4.126 15 C -0.012 4.012 16 N -0.381 5.381 17 C 0.312 3.688 18 C -0.218 4.218 19 O -0.492 6.492 20 C -0.016 4.016 21 H 0.083 0.917 22 H 0.059 0.941 23 H 0.072 0.928 24 H 0.084 0.916 25 H 0.058 0.942 26 H 0.043 0.957 27 H 0.039 0.961 28 H 0.070 0.930 29 H 0.122 0.878 30 H 0.115 0.885 31 H 0.122 0.878 32 H 0.125 0.875 33 H 0.111 0.889 34 H 0.124 0.876 35 H 0.093 0.907 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.692 6.523 14.092 15.760 hybrid contribution -0.155 0.079 -0.846 0.864 sum -2.846 6.603 13.245 15.071 Atomic orbital electron populations 1.21762 0.95852 1.01261 1.01381 1.21375 0.96406 0.96284 1.00507 1.20889 0.99065 0.94728 0.92817 0.92229 1.19623 0.96538 0.95704 0.92592 1.21482 1.23973 1.18122 0.91179 0.94849 1.25958 0.98285 0.99442 0.95821 1.70084 1.46295 1.44839 0.98822 0.85787 0.80076 0.79692 0.77868 1.19265 1.22168 1.16449 1.23151 1.00874 0.95706 0.92860 1.23509 1.01272 0.99698 0.76760 1.50285 1.69580 1.12057 1.06144 1.21350 0.74962 0.91920 0.80565 1.21866 1.05470 0.88778 1.05725 1.90673 1.53114 1.68406 1.37010 1.23279 1.01013 0.85289 0.91971 0.91658 0.94102 0.92805 0.91573 0.94241 0.95676 0.96053 0.93000 0.87809 0.88502 0.87835 0.87486 0.88878 0.87603 0.90667 0.89355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.33 9.26 71.98 0.67 -3.67 16 2 C -0.11 -3.51 5.33 30.59 0.16 -3.34 16 3 C -0.06 -1.81 1.87 -10.79 -0.02 -1.83 16 4 H 0.06 2.01 7.94 -2.39 -0.02 1.99 16 5 C -0.01 -0.30 3.34 29.85 0.10 -0.20 16 6 C -0.51 -27.14 8.89 25.60 0.23 -26.91 16 7 H 0.03 1.99 7.44 -2.91 -0.02 1.96 16 8 C 0.00 0.03 5.47 84.66 0.46 0.49 16 9 N -0.96 -58.85 13.96 21.45 0.30 -58.55 16 10 Si 0.94 42.14 27.52 68.60 1.89 44.03 16 11 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 12 H -0.30 -13.42 7.11 99.48 0.71 -12.71 16 13 H -0.24 -9.77 6.47 99.48 0.64 -9.13 16 14 C -0.11 -2.68 2.45 -10.13 -0.02 -2.70 16 15 C 0.11 2.32 8.17 86.48 0.71 3.02 16 16 N -0.65 -15.90 3.61 -836.53 -3.02 -18.92 16 17 C 0.52 13.80 8.17 87.66 0.72 14.52 16 18 C -0.16 -2.56 10.07 71.23 0.72 -1.84 16 19 O -0.61 -21.94 17.81 -3.04 -0.05 -22.00 16 20 C 0.11 2.65 7.49 86.48 0.65 3.30 16 21 H 0.06 1.66 6.42 -2.39 -0.02 1.65 16 22 H 0.04 1.40 6.64 -2.39 -0.02 1.38 16 23 H 0.05 1.44 8.14 -2.38 -0.02 1.43 16 24 H 0.07 1.81 7.48 -2.38 -0.02 1.79 16 25 H 0.04 1.56 7.00 -2.39 -0.02 1.54 16 26 H 0.03 1.02 5.19 -2.39 -0.01 1.01 16 27 H 0.02 0.83 7.70 -2.39 -0.02 0.81 16 28 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 29 H 0.10 2.55 7.13 -2.39 -0.02 2.53 16 30 H 0.10 1.98 7.96 -2.38 -0.02 1.96 16 31 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.11 1.29 8.14 -2.39 -0.02 1.28 16 33 H 0.09 1.44 8.12 -2.39 -0.02 1.42 16 34 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.09 2.13 8.06 -2.39 -0.02 2.11 16 Total: -1.00 -69.51 290.17 4.46 -65.06 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: 0.98 Total: 9.55 kcal Atomic # 6 Polarization: -23.54 SS G_CDS: 4.36 Total: -19.17 kcal Atomic # 7 Polarization: -74.75 SS G_CDS: -2.72 Total: -77.46 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -0.05 Total: -22.00 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 1.89 Total: 44.03 kcal Total: -69.51 4.46 -65.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260394904.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.955 kcal (2) G-P(sol) polarization free energy of solvation -69.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds