Wall clock time and date at job start Mon Mar 30 2020 03:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46772 * 2 1 4 4 H 1.08996 * 109.47357 * 305.52678 * 3 2 1 5 5 C 1.50694 * 109.47221 * 65.52993 * 3 2 1 6 6 H 1.07999 * 119.99885 * 55.43146 * 5 3 2 7 7 C 1.37874 * 120.00183 * 235.42304 * 5 3 2 8 8 N 1.31515 * 120.00102 * 5.73097 * 7 5 3 9 9 Si 1.86804 * 120.00112 * 185.72435 * 7 5 3 10 10 H 1.48503 * 109.46993 * 60.00781 * 9 7 5 11 11 H 1.48499 * 109.47180 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47344 * 300.00259 * 9 7 5 13 13 C 1.53009 * 109.46949 * 185.52953 * 3 2 1 14 14 H 1.08999 * 110.88281 * 299.29945 * 13 3 2 15 15 C 1.55160 * 111.00105 * 63.18134 * 13 3 2 16 16 C 1.54324 * 102.93889 * 153.57532 * 15 13 3 17 17 N 1.47022 * 107.27442 * 337.80885 * 16 15 13 18 18 C 1.34776 * 125.65006 * 178.97669 * 17 16 15 19 19 C 1.50701 * 119.99776 * 359.96872 * 18 17 16 20 20 O 1.21276 * 119.99793 * 179.97438 * 18 17 16 21 21 C 1.47464 * 108.71973 * 358.96906 * 17 16 15 22 22 H 1.09004 * 109.46954 * 174.40611 * 1 2 3 23 23 H 1.08993 * 109.47071 * 294.40260 * 1 2 3 24 24 H 1.09002 * 109.47003 * 54.41143 * 1 2 3 25 25 H 1.08998 * 109.46885 * 240.00286 * 2 1 3 26 26 H 1.09000 * 109.47135 * 119.99933 * 2 1 3 27 27 H 0.96999 * 120.00256 * 179.97438 * 8 7 5 28 28 H 1.09001 * 110.72072 * 271.93380 * 15 13 3 29 29 H 1.08992 * 110.72084 * 35.03721 * 15 13 3 30 30 H 1.09002 * 109.88211 * 97.22493 * 16 15 13 31 31 H 1.08998 * 109.88498 * 218.22703 * 16 15 13 32 32 H 1.09004 * 109.46607 * 90.00613 * 19 18 17 33 33 H 1.09005 * 109.47001 * 209.99912 * 19 18 17 34 34 H 1.08995 * 109.47523 * 330.00158 * 19 18 17 35 35 H 1.08993 * 110.35607 * 265.25463 * 21 17 16 36 36 H 1.09002 * 110.40596 * 142.91940 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5980 1.9841 -0.8363 5 6 1.6525 2.1123 1.2931 6 1 1.9388 1.6713 2.2365 7 6 0.9327 3.2880 1.2719 8 7 0.4873 3.7659 0.1305 9 14 0.5901 4.2023 2.8645 10 1 1.8756 4.5803 3.5047 11 1 -0.1970 5.4273 2.5725 12 1 -0.1813 3.3260 3.7823 13 6 3.5637 1.4448 -0.1390 14 1 4.0306 0.9187 0.6937 15 6 3.9991 0.8339 -1.4972 16 6 5.3612 1.5104 -1.7596 17 7 5.3906 2.7521 -0.9729 18 6 6.4194 3.6208 -0.9147 19 6 7.6772 3.3529 -1.7005 20 8 6.3330 4.6180 -0.2299 21 6 4.1082 2.8901 -0.2582 22 1 -0.3633 -1.0228 -0.1002 23 1 -0.3633 0.4245 0.9358 24 1 -0.3633 0.5981 -0.8357 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 -0.0194 4.5929 0.1156 28 1 4.1148 -0.2468 -1.4147 29 1 3.2836 1.0852 -2.2801 30 1 6.1695 0.8514 -1.4424 31 1 5.4637 1.7383 -2.8205 32 1 7.5907 3.8036 -2.6892 33 1 8.5309 3.7846 -1.1779 34 1 7.8197 2.2772 -1.8026 35 1 3.4189 3.5091 -0.8324 36 1 4.2688 3.3177 0.7315 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260438914.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:49 Heat of formation + Delta-G solvation = -58.282493 kcal Electronic energy + Delta-G solvation = -16195.945287 eV Core-core repulsion = 13679.160240 eV Total energy + Delta-G solvation = -2516.785047 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.50142 -37.27296 -34.67391 -31.84374 -31.05788 -29.35855 -28.57287 -25.86418 -23.98820 -22.22038 -20.57393 -19.06268 -18.61152 -16.71026 -16.47482 -15.57527 -14.91390 -14.44535 -13.97230 -13.42620 -13.09264 -12.82730 -12.60724 -12.30549 -12.26244 -12.06405 -11.63242 -11.45016 -11.18311 -10.95069 -10.86090 -10.48323 -10.40787 -10.09552 -9.90406 -9.62213 -9.36585 -8.92132 -8.81121 -8.42663 -8.10892 -6.00358 -4.01033 3.01355 3.34819 3.40407 3.44073 3.51984 4.46453 4.89506 5.14011 5.25553 5.26398 5.39668 5.52694 5.58692 5.70583 5.90450 6.00323 6.23765 6.25135 6.28343 6.43774 6.50270 6.59053 6.72025 6.84866 6.91942 7.01842 7.15190 7.23674 7.38001 7.59540 7.84221 7.94653 8.03961 8.45222 8.57974 9.08772 9.61836 11.08166 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.024030 B = 0.009693 C = 0.007368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.945246 B = 2888.058432 C = 3799.452925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.106 4.106 3 C 0.039 3.961 4 H 0.072 0.928 5 C -0.509 4.509 6 H 0.050 0.950 7 C 0.071 3.929 8 N -0.890 5.890 9 Si 0.881 3.119 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.278 1.278 13 C -0.081 4.081 14 H 0.062 0.938 15 C -0.133 4.133 16 C 0.102 3.898 17 N -0.619 5.619 18 C 0.516 3.484 19 C -0.168 4.168 20 O -0.555 6.555 21 C 0.125 3.875 22 H 0.021 0.979 23 H 0.058 0.942 24 H 0.046 0.954 25 H 0.028 0.972 26 H 0.038 0.962 27 H 0.261 0.739 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.238 -6.197 -5.542 11.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.144 4.144 3 C 0.020 3.980 4 H 0.090 0.910 5 C -0.547 4.547 6 H 0.068 0.932 7 C -0.131 4.131 8 N -0.528 5.528 9 Si 0.709 3.291 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.204 1.204 13 C -0.101 4.101 14 H 0.080 0.920 15 C -0.171 4.171 16 C -0.021 4.021 17 N -0.353 5.353 18 C 0.305 3.695 19 C -0.228 4.228 20 O -0.434 6.434 21 C 0.004 3.996 22 H 0.040 0.960 23 H 0.078 0.922 24 H 0.065 0.935 25 H 0.047 0.953 26 H 0.057 0.943 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.149 -5.447 -5.260 11.124 hybrid contribution -0.178 0.514 0.835 0.997 sum 7.971 -4.933 -4.424 10.366 Atomic orbital electron populations 1.21523 0.96806 0.97732 1.02563 1.21566 0.95569 0.99317 0.97982 1.18977 0.87542 0.91940 0.99547 0.90993 1.20957 1.34468 1.07108 0.92181 0.93151 1.24889 0.95164 0.97308 0.95717 1.69862 1.36751 1.21417 1.24808 0.86825 0.78444 0.79398 0.84400 1.20157 1.21369 1.20370 1.22592 1.00748 0.92904 0.93864 0.91991 1.22793 0.94666 0.99398 1.00238 1.22020 0.99226 0.85932 0.94937 1.48851 1.16721 1.22602 1.47161 1.20366 0.84303 0.82466 0.82340 1.21866 0.96022 1.03459 1.01404 1.90708 1.82285 1.27814 1.42573 1.22264 0.81725 0.98647 0.96965 0.95974 0.92249 0.93466 0.95344 0.94321 0.92903 0.91016 0.90753 0.92220 0.92226 0.89331 0.89411 0.90536 0.90737 0.90860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.60 9.64 37.16 0.36 -2.24 16 2 C -0.11 -2.13 5.29 -26.73 -0.14 -2.27 16 3 C 0.04 0.88 1.61 -91.77 -0.15 0.74 16 4 H 0.07 1.83 6.91 -51.93 -0.36 1.47 16 5 C -0.51 -13.15 6.92 -34.44 -0.24 -13.39 16 6 H 0.05 1.32 7.82 -52.49 -0.41 0.91 16 7 C 0.07 1.92 5.45 -17.82 -0.10 1.82 16 8 N -0.89 -24.77 12.62 55.43 0.70 -24.07 16 9 Si 0.88 21.39 29.54 -169.99 -5.02 16.37 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 C -0.08 -1.61 2.55 -88.46 -0.23 -1.83 16 14 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 15 C -0.13 -2.07 5.40 -24.89 -0.13 -2.20 16 16 C 0.10 1.43 6.16 -3.06 -0.02 1.41 16 17 N -0.62 -11.14 3.33 -170.49 -0.57 -11.70 16 18 C 0.52 9.29 7.96 -10.99 -0.09 9.21 16 19 C -0.17 -1.98 9.90 36.01 0.36 -1.63 16 20 O -0.55 -12.61 17.36 5.56 0.10 -12.51 16 21 C 0.12 2.69 5.88 -2.51 -0.01 2.67 16 22 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 23 H 0.06 1.31 7.58 -51.93 -0.39 0.91 16 24 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.03 0.50 7.13 -51.93 -0.37 0.13 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.07 0.97 8.01 -51.93 -0.42 0.55 16 29 H 0.07 1.18 8.04 -51.93 -0.42 0.77 16 30 H 0.06 0.70 7.77 -51.93 -0.40 0.30 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.08 0.73 7.07 -51.93 -0.37 0.36 16 35 H 0.07 1.79 8.03 -51.93 -0.42 1.38 16 36 H 0.07 1.77 8.04 -51.93 -0.42 1.35 16 LS Contribution 292.61 15.07 4.41 4.41 Total: -1.00 -29.76 292.61 -6.84 -36.59 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -6.07 Total: -1.36 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -0.39 Total: -7.72 kcal Atomic # 7 Polarization: -35.91 SS G_CDS: 0.13 Total: -35.78 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.10 Total: -12.51 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.76 -6.84 -36.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260438914.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.688 kcal (2) G-P(sol) polarization free energy of solvation -29.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds