Wall clock time and date at job start Mon Mar 30 2020 03:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46772 * 2 1 4 4 H 1.08996 * 109.47357 * 305.52678 * 3 2 1 5 5 C 1.50694 * 109.47221 * 65.52993 * 3 2 1 6 6 H 1.07999 * 119.99885 * 55.43146 * 5 3 2 7 7 C 1.37874 * 120.00183 * 235.42304 * 5 3 2 8 8 N 1.31515 * 120.00102 * 5.73097 * 7 5 3 9 9 Si 1.86804 * 120.00112 * 185.72435 * 7 5 3 10 10 H 1.48503 * 109.46993 * 60.00781 * 9 7 5 11 11 H 1.48499 * 109.47180 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47344 * 300.00259 * 9 7 5 13 13 C 1.53009 * 109.46949 * 185.52953 * 3 2 1 14 14 H 1.08999 * 110.88281 * 299.29945 * 13 3 2 15 15 C 1.55160 * 111.00105 * 63.18134 * 13 3 2 16 16 C 1.54324 * 102.93889 * 153.57532 * 15 13 3 17 17 N 1.47022 * 107.27442 * 337.80885 * 16 15 13 18 18 C 1.34776 * 125.65006 * 178.97669 * 17 16 15 19 19 C 1.50701 * 119.99776 * 359.96872 * 18 17 16 20 20 O 1.21276 * 119.99793 * 179.97438 * 18 17 16 21 21 C 1.47464 * 108.71973 * 358.96906 * 17 16 15 22 22 H 1.09004 * 109.46954 * 174.40611 * 1 2 3 23 23 H 1.08993 * 109.47071 * 294.40260 * 1 2 3 24 24 H 1.09002 * 109.47003 * 54.41143 * 1 2 3 25 25 H 1.08998 * 109.46885 * 240.00286 * 2 1 3 26 26 H 1.09000 * 109.47135 * 119.99933 * 2 1 3 27 27 H 0.96999 * 120.00256 * 179.97438 * 8 7 5 28 28 H 1.09001 * 110.72072 * 271.93380 * 15 13 3 29 29 H 1.08992 * 110.72084 * 35.03721 * 15 13 3 30 30 H 1.09002 * 109.88211 * 97.22493 * 16 15 13 31 31 H 1.08998 * 109.88498 * 218.22703 * 16 15 13 32 32 H 1.09004 * 109.46607 * 90.00613 * 19 18 17 33 33 H 1.09005 * 109.47001 * 209.99912 * 19 18 17 34 34 H 1.08995 * 109.47523 * 330.00158 * 19 18 17 35 35 H 1.08993 * 110.35607 * 265.25463 * 21 17 16 36 36 H 1.09002 * 110.40596 * 142.91940 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5980 1.9841 -0.8363 5 6 1.6525 2.1123 1.2931 6 1 1.9388 1.6713 2.2365 7 6 0.9327 3.2880 1.2719 8 7 0.4873 3.7659 0.1305 9 14 0.5901 4.2023 2.8645 10 1 1.8756 4.5803 3.5047 11 1 -0.1970 5.4273 2.5725 12 1 -0.1813 3.3260 3.7823 13 6 3.5637 1.4448 -0.1390 14 1 4.0306 0.9187 0.6937 15 6 3.9991 0.8339 -1.4972 16 6 5.3612 1.5104 -1.7596 17 7 5.3906 2.7521 -0.9729 18 6 6.4194 3.6208 -0.9147 19 6 7.6772 3.3529 -1.7005 20 8 6.3330 4.6180 -0.2299 21 6 4.1082 2.8901 -0.2582 22 1 -0.3633 -1.0228 -0.1002 23 1 -0.3633 0.4245 0.9358 24 1 -0.3633 0.5981 -0.8357 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 -0.0194 4.5929 0.1156 28 1 4.1148 -0.2468 -1.4147 29 1 3.2836 1.0852 -2.2801 30 1 6.1695 0.8514 -1.4424 31 1 5.4637 1.7383 -2.8205 32 1 7.5907 3.8036 -2.6892 33 1 8.5309 3.7846 -1.1779 34 1 7.8197 2.2772 -1.8026 35 1 3.4189 3.5091 -0.8324 36 1 4.2688 3.3177 0.7315 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260438914.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:49 Heat of formation + Delta-G solvation = -76.778371 kcal Electronic energy + Delta-G solvation = -16196.747328 eV Core-core repulsion = 13679.160240 eV Total energy + Delta-G solvation = -2517.587088 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.94767 -38.82840 -36.36588 -33.78488 -32.52104 -30.58925 -30.01010 -27.64882 -25.73441 -23.63377 -22.16466 -20.72728 -20.02120 -18.60539 -17.92319 -17.05880 -16.46698 -16.28000 -15.38336 -15.06495 -14.56114 -14.31956 -14.27401 -13.74550 -13.55512 -13.29359 -13.13912 -12.98419 -12.88405 -12.75560 -12.53928 -12.27663 -12.12631 -11.72150 -11.46289 -11.26712 -10.91464 -10.79425 -10.62328 -10.45066 -9.58638 -8.08824 -6.11418 1.35118 1.39406 1.43240 1.64322 2.17016 2.42877 3.22185 3.69337 3.87028 4.11246 4.17785 4.41286 4.55415 4.58901 4.63095 4.66855 4.75239 4.78524 4.88693 4.98773 5.04986 5.14746 5.21212 5.27284 5.31466 5.32998 5.50576 5.58560 5.69626 5.73064 5.93441 6.01824 6.47546 6.68394 7.05800 7.18845 7.52007 8.98555 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.024030 B = 0.009693 C = 0.007368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.945246 B = 2888.058432 C = 3799.452925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.101 4.101 3 C 0.037 3.963 4 H 0.039 0.961 5 C -0.510 4.510 6 H 0.042 0.958 7 C 0.026 3.974 8 N -0.917 5.917 9 Si 0.924 3.076 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.268 1.268 13 C -0.078 4.078 14 H 0.063 0.937 15 C -0.124 4.124 16 C 0.100 3.900 17 N -0.622 5.622 18 C 0.503 3.497 19 C -0.152 4.152 20 O -0.618 6.618 21 C 0.133 3.867 22 H 0.056 0.944 23 H 0.031 0.969 24 H 0.030 0.970 25 H 0.061 0.939 26 H 0.043 0.957 27 H 0.256 0.744 28 H 0.105 0.895 29 H 0.068 0.932 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.111 0.889 33 H 0.095 0.905 34 H 0.110 0.890 35 H 0.036 0.964 36 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.053 -8.725 -6.886 14.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.139 4.139 3 C 0.018 3.982 4 H 0.058 0.942 5 C -0.548 4.548 6 H 0.060 0.940 7 C -0.172 4.172 8 N -0.557 5.557 9 Si 0.751 3.249 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.193 1.193 13 C -0.098 4.098 14 H 0.081 0.919 15 C -0.161 4.161 16 C -0.021 4.021 17 N -0.355 5.355 18 C 0.295 3.705 19 C -0.211 4.211 20 O -0.501 6.501 21 C 0.010 3.990 22 H 0.075 0.925 23 H 0.050 0.950 24 H 0.049 0.951 25 H 0.079 0.921 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.124 0.876 29 H 0.087 0.913 30 H 0.115 0.885 31 H 0.108 0.892 32 H 0.130 0.870 33 H 0.114 0.886 34 H 0.128 0.872 35 H 0.054 0.946 36 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 9.972 -8.022 -6.618 14.408 hybrid contribution -0.739 1.281 1.264 1.945 sum 9.233 -6.741 -5.354 12.623 Atomic orbital electron populations 1.21467 0.97114 0.99295 1.00325 1.21484 0.95282 0.97394 0.99739 1.18917 0.89585 0.93174 0.96498 0.94246 1.21303 1.33181 1.06967 0.93370 0.94009 1.25428 0.95837 0.98346 0.97630 1.69970 1.38054 1.21653 1.26032 0.86143 0.77885 0.78678 0.82196 1.20937 1.21404 1.19280 1.22377 0.98421 0.92025 0.96958 0.91887 1.22763 0.95395 1.01291 0.96671 1.22324 0.99309 0.84311 0.96150 1.49001 1.15249 1.24213 1.47059 1.21678 0.85784 0.81251 0.81829 1.21875 0.92099 1.06004 1.01125 1.90676 1.83561 1.30471 1.45384 1.21849 0.83428 0.99224 0.94544 0.92492 0.95024 0.95111 0.92051 0.93798 0.93445 0.87613 0.91313 0.88479 0.89163 0.87034 0.88627 0.87157 0.94572 0.95116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.90 9.64 71.98 0.69 -4.21 16 2 C -0.10 -3.87 5.29 30.59 0.16 -3.71 16 3 C 0.04 1.71 1.61 -11.54 -0.02 1.69 16 4 H 0.04 2.06 6.91 -2.39 -0.02 2.05 16 5 C -0.51 -27.08 6.92 25.60 0.18 -26.90 16 6 H 0.04 2.24 7.82 -2.91 -0.02 2.22 16 7 C 0.03 1.46 5.45 84.65 0.46 1.92 16 8 N -0.92 -53.33 12.62 21.45 0.27 -53.06 16 9 Si 0.92 45.28 29.54 68.60 2.03 47.31 16 10 H -0.28 -14.10 7.11 99.48 0.71 -13.40 16 11 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 12 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 13 C -0.08 -3.03 2.55 -9.40 -0.02 -3.06 16 14 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 15 C -0.12 -3.40 5.40 31.78 0.17 -3.23 16 16 C 0.10 2.36 6.16 86.73 0.53 2.89 16 17 N -0.62 -21.63 3.33 -811.70 -2.70 -24.33 16 18 C 0.50 17.60 7.96 87.66 0.70 18.30 16 19 C -0.15 -3.00 9.90 71.24 0.71 -2.30 16 20 O -0.62 -28.94 17.36 -3.02 -0.05 -28.99 16 21 C 0.13 5.91 5.88 86.85 0.51 6.42 16 22 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 23 H 0.03 1.38 7.58 -2.39 -0.02 1.36 16 24 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.06 1.95 7.13 -2.39 -0.02 1.93 16 26 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 28 H 0.11 2.25 8.01 -2.39 -0.02 2.23 16 29 H 0.07 1.99 8.04 -2.39 -0.02 1.98 16 30 H 0.10 1.66 7.77 -2.39 -0.02 1.64 16 31 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 34 H 0.11 1.45 7.07 -2.39 -0.02 1.44 16 35 H 0.04 1.86 8.03 -2.39 -0.02 1.84 16 36 H 0.03 1.58 8.04 -2.39 -0.02 1.56 16 Total: -1.00 -70.24 292.61 4.64 -65.59 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: 1.03 Total: 5.66 kcal Atomic # 6 Polarization: -16.25 SS G_CDS: 4.07 Total: -12.18 kcal Atomic # 7 Polarization: -74.96 SS G_CDS: -2.43 Total: -77.39 kcal Atomic # 8 Polarization: -28.94 SS G_CDS: -0.05 Total: -28.99 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -70.24 4.64 -65.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260438914.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.184 kcal (2) G-P(sol) polarization free energy of solvation -70.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds