Wall clock time and date at job start Mon Mar 30 2020 03:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47107 * 2 1 4 4 H 1.09001 * 109.46827 * 305.84556 * 3 2 1 5 5 C 1.50696 * 109.46715 * 185.84474 * 3 2 1 6 6 H 1.07999 * 119.99882 * 245.36428 * 5 3 2 7 7 C 1.37880 * 119.99866 * 65.37436 * 5 3 2 8 8 N 1.31512 * 120.00280 * 5.52542 * 7 5 3 9 9 Si 1.86807 * 119.99841 * 185.80513 * 7 5 3 10 10 H 1.48503 * 109.47191 * 179.72285 * 9 7 5 11 11 H 1.48500 * 109.46925 * 299.72331 * 9 7 5 12 12 H 1.48497 * 109.47054 * 59.72188 * 9 7 5 13 13 C 1.53001 * 109.47137 * 65.84529 * 3 2 1 14 14 H 1.08999 * 109.87461 * 300.94538 * 13 3 2 15 15 C 1.54322 * 109.88192 * 61.96308 * 13 3 2 16 16 C 1.55398 * 102.82891 * 141.51489 * 15 13 3 17 17 C 1.54907 * 101.66802 * 324.66334 * 16 15 13 18 18 N 1.47020 * 109.88198 * 179.97438 * 13 3 2 19 19 C 1.34777 * 125.64366 * 61.67630 * 18 13 3 20 20 C 1.50699 * 120.00119 * 185.10393 * 19 18 13 21 21 O 1.21282 * 120.00516 * 5.11287 * 19 18 13 22 22 H 1.08999 * 109.47198 * 64.88914 * 1 2 3 23 23 H 1.09001 * 109.47672 * 184.88839 * 1 2 3 24 24 H 1.09001 * 109.47250 * 304.89564 * 1 2 3 25 25 H 1.08996 * 109.46824 * 239.99536 * 2 1 3 26 26 H 1.09000 * 109.46752 * 119.99984 * 2 1 3 27 27 H 0.96996 * 119.99928 * 355.49485 * 8 7 5 28 28 H 1.09002 * 110.72048 * 259.97203 * 15 13 3 29 29 H 1.09004 * 110.72429 * 23.24360 * 15 13 3 30 30 H 1.09003 * 111.03939 * 206.52388 * 16 15 13 31 31 H 1.09002 * 110.89195 * 82.73352 * 16 15 13 32 32 H 1.08999 * 110.36369 * 278.08635 * 17 16 15 33 33 H 1.09002 * 110.36907 * 155.76256 * 17 16 15 34 34 H 1.09001 * 109.47278 * 90.00225 * 20 19 18 35 35 H 1.08995 * 109.47857 * 210.00470 * 20 19 18 36 36 H 1.09010 * 109.46776 * 330.00846 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5937 1.9856 -0.8330 5 6 3.5400 1.4449 -0.1447 6 1 4.1598 1.8065 0.6625 7 6 4.1211 0.9855 -1.3076 8 7 3.3670 0.6475 -2.3306 9 14 5.9793 0.8359 -1.4273 10 1 6.3487 0.3160 -2.7684 11 1 6.5974 2.1711 -1.2265 12 1 6.4690 -0.0985 -0.3821 13 6 1.6535 2.1201 1.3162 14 1 0.5701 2.1070 1.4355 15 6 2.3207 1.3876 2.4993 16 6 2.7157 2.5531 3.4482 17 6 3.0965 3.6642 2.4381 18 7 2.1400 3.5074 1.3261 19 6 1.7725 4.4748 0.4626 20 6 2.4376 5.8260 0.5170 21 8 0.9063 4.2580 -0.3583 22 1 -0.3633 0.4361 -0.9305 23 1 -0.3634 -1.0239 0.0876 24 1 -0.3634 0.5879 0.8429 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.4008 0.6590 -2.2456 28 1 1.6137 0.7148 2.9846 29 1 3.2056 0.8446 2.1672 30 1 3.5691 2.2803 4.0690 31 1 1.8689 2.8577 4.0632 32 1 4.1173 3.5211 2.0840 33 1 2.9872 4.6471 2.8963 34 1 3.3104 5.8279 -0.1359 35 1 1.7348 6.5906 0.1863 36 1 2.7489 6.0367 1.5403 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260614840.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:29 Heat of formation + Delta-G solvation = -52.310063 kcal Electronic energy + Delta-G solvation = -16850.052230 eV Core-core repulsion = 14333.526168 eV Total energy + Delta-G solvation = -2516.526063 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.56898 -37.01520 -34.72456 -31.69654 -31.14118 -29.39040 -28.15659 -25.80415 -23.22708 -22.52759 -21.20433 -19.44434 -18.32890 -16.81069 -15.86989 -15.81116 -14.61251 -14.21976 -13.74922 -13.64333 -13.15972 -12.90020 -12.36703 -12.29449 -12.15529 -11.93835 -11.64330 -11.59491 -11.07603 -10.83373 -10.76501 -10.58572 -10.29884 -10.11526 -10.00649 -9.90770 -9.41836 -9.06223 -8.36090 -8.10758 -7.71792 -6.20258 -3.91703 3.34485 3.44043 3.45535 3.64487 3.75902 4.58928 5.01191 5.03922 5.27431 5.43980 5.49143 5.62255 5.73896 5.83415 5.86906 5.97645 6.10094 6.14995 6.15360 6.21437 6.32309 6.36376 6.46737 6.63663 6.79858 6.89760 7.02787 7.10341 7.26242 7.56187 7.89632 8.26826 8.38902 8.56507 8.91882 9.00012 9.79116 11.16153 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.019966 B = 0.012445 C = 0.011072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.068494 B = 2249.293442 C = 2528.251513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C 0.024 3.976 4 H 0.035 0.965 5 C -0.580 4.580 6 H 0.049 0.951 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 1.061 2.939 10 H -0.285 1.285 11 H -0.292 1.292 12 H -0.289 1.289 13 C 0.152 3.848 14 H 0.050 0.950 15 C -0.124 4.124 16 C -0.134 4.134 17 C 0.105 3.895 18 N -0.596 5.596 19 C 0.527 3.473 20 C -0.168 4.168 21 O -0.552 6.552 22 H 0.045 0.955 23 H 0.035 0.965 24 H 0.042 0.958 25 H 0.066 0.934 26 H 0.044 0.956 27 H 0.274 0.726 28 H 0.063 0.937 29 H 0.096 0.904 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.041 4.794 11.132 12.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C 0.005 3.995 4 H 0.053 0.947 5 C -0.619 4.619 6 H 0.067 0.933 7 C -0.187 4.187 8 N -0.551 5.551 9 Si 0.890 3.110 10 H -0.210 1.210 11 H -0.218 1.218 12 H -0.216 1.216 13 C 0.049 3.951 14 H 0.068 0.932 15 C -0.161 4.161 16 C -0.173 4.173 17 C -0.019 4.019 18 N -0.329 5.329 19 C 0.316 3.684 20 C -0.227 4.227 21 O -0.430 6.430 22 H 0.064 0.936 23 H 0.054 0.946 24 H 0.061 0.939 25 H 0.084 0.916 26 H 0.062 0.938 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.115 0.885 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.109 0.891 35 H 0.102 0.898 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.711 4.365 9.594 10.564 hybrid contribution -1.089 0.393 1.077 1.581 sum -0.377 4.758 10.670 11.689 Atomic orbital electron populations 1.21885 0.98843 0.99291 1.00773 1.21691 0.92221 1.00420 1.01383 1.19145 0.96976 0.91019 0.92337 0.94743 1.21821 0.90725 1.45708 1.03614 0.93325 1.25639 1.06308 0.94374 0.92339 1.70736 1.07410 1.46103 1.30874 0.83663 0.75125 0.76201 0.75971 1.21001 1.21849 1.21622 1.21600 0.95669 0.80090 0.97717 0.93235 1.22794 1.02185 0.96755 0.94401 1.22785 1.01045 0.96339 0.97083 1.22251 0.94143 0.98221 0.87261 1.48341 1.43555 1.10876 1.30092 1.20124 0.82720 0.85625 0.79944 1.21871 1.02582 0.94853 1.03429 1.90672 1.32768 1.82353 1.37202 0.93587 0.94574 0.93903 0.91574 0.93762 0.91441 0.91814 0.88508 0.90618 0.91715 0.91183 0.91807 0.89057 0.89807 0.90934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 9.79 37.16 0.36 -2.67 16 2 C -0.12 -2.74 4.94 -26.73 -0.13 -2.87 16 3 C 0.02 0.61 1.14 -91.77 -0.11 0.50 16 4 H 0.03 1.03 6.54 -51.93 -0.34 0.69 16 5 C -0.58 -15.50 7.06 -34.44 -0.24 -15.74 16 6 H 0.05 1.26 5.92 -52.49 -0.31 0.95 16 7 C 0.02 0.49 5.22 -17.82 -0.09 0.40 16 8 N -0.91 -27.90 13.07 55.43 0.72 -27.18 16 9 Si 1.06 25.07 29.91 -169.99 -5.08 19.99 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 13 C 0.15 3.18 2.38 -66.95 -0.16 3.02 16 14 H 0.05 1.07 6.48 -51.93 -0.34 0.73 16 15 C -0.12 -2.15 4.98 -24.77 -0.12 -2.27 16 16 C -0.13 -1.86 7.09 -24.45 -0.17 -2.04 16 17 C 0.10 1.60 6.22 -2.48 -0.02 1.59 16 18 N -0.60 -11.76 2.66 -162.95 -0.43 -12.19 16 19 C 0.53 10.98 7.70 -10.99 -0.08 10.90 16 20 C -0.17 -2.52 9.95 36.01 0.36 -2.16 16 21 O -0.55 -13.99 16.32 5.56 0.09 -13.90 16 22 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 23 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.04 0.81 6.37 -51.93 -0.33 0.48 16 25 H 0.07 1.72 6.09 -51.93 -0.32 1.40 16 26 H 0.04 0.96 7.01 -51.93 -0.36 0.60 16 27 H 0.27 8.45 5.79 -40.82 -0.24 8.21 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.10 1.89 6.21 -51.93 -0.32 1.56 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 1.13 7.58 -51.93 -0.39 0.74 16 33 H 0.06 0.78 6.88 -51.93 -0.36 0.42 16 34 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 35 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.07 0.86 6.51 -51.92 -0.34 0.52 16 LS Contribution 278.14 15.07 4.19 4.19 Total: -1.00 -32.74 278.14 -6.32 -39.06 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -5.40 Total: 1.38 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: -0.41 Total: -11.35 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: 0.29 Total: -39.37 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: 0.09 Total: -13.90 kcal Atomic # 14 Polarization: 25.07 SS G_CDS: -5.08 Total: 19.99 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -32.74 -6.32 -39.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260614840.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.250 kcal (2) G-P(sol) polarization free energy of solvation -32.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds