Wall clock time and date at job start Mon Mar 30 2020 03:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47107 * 2 1 4 4 H 1.09001 * 109.46827 * 305.84556 * 3 2 1 5 5 C 1.50696 * 109.46715 * 185.84474 * 3 2 1 6 6 H 1.07999 * 119.99882 * 245.36428 * 5 3 2 7 7 C 1.37880 * 119.99866 * 65.37436 * 5 3 2 8 8 N 1.31512 * 120.00280 * 5.52542 * 7 5 3 9 9 Si 1.86807 * 119.99841 * 185.80513 * 7 5 3 10 10 H 1.48503 * 109.47191 * 179.72285 * 9 7 5 11 11 H 1.48500 * 109.46925 * 299.72331 * 9 7 5 12 12 H 1.48497 * 109.47054 * 59.72188 * 9 7 5 13 13 C 1.53001 * 109.47137 * 65.84529 * 3 2 1 14 14 H 1.08999 * 109.87461 * 300.94538 * 13 3 2 15 15 C 1.54322 * 109.88192 * 61.96308 * 13 3 2 16 16 C 1.55398 * 102.82891 * 141.51489 * 15 13 3 17 17 C 1.54907 * 101.66802 * 324.66334 * 16 15 13 18 18 N 1.47020 * 109.88198 * 179.97438 * 13 3 2 19 19 C 1.34777 * 125.64366 * 61.67630 * 18 13 3 20 20 C 1.50699 * 120.00119 * 185.10393 * 19 18 13 21 21 O 1.21282 * 120.00516 * 5.11287 * 19 18 13 22 22 H 1.08999 * 109.47198 * 64.88914 * 1 2 3 23 23 H 1.09001 * 109.47672 * 184.88839 * 1 2 3 24 24 H 1.09001 * 109.47250 * 304.89564 * 1 2 3 25 25 H 1.08996 * 109.46824 * 239.99536 * 2 1 3 26 26 H 1.09000 * 109.46752 * 119.99984 * 2 1 3 27 27 H 0.96996 * 119.99928 * 355.49485 * 8 7 5 28 28 H 1.09002 * 110.72048 * 259.97203 * 15 13 3 29 29 H 1.09004 * 110.72429 * 23.24360 * 15 13 3 30 30 H 1.09003 * 111.03939 * 206.52388 * 16 15 13 31 31 H 1.09002 * 110.89195 * 82.73352 * 16 15 13 32 32 H 1.08999 * 110.36369 * 278.08635 * 17 16 15 33 33 H 1.09002 * 110.36907 * 155.76256 * 17 16 15 34 34 H 1.09001 * 109.47278 * 90.00225 * 20 19 18 35 35 H 1.08995 * 109.47857 * 210.00470 * 20 19 18 36 36 H 1.09010 * 109.46776 * 330.00846 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5937 1.9856 -0.8330 5 6 3.5400 1.4449 -0.1447 6 1 4.1598 1.8065 0.6625 7 6 4.1211 0.9855 -1.3076 8 7 3.3670 0.6475 -2.3306 9 14 5.9793 0.8359 -1.4273 10 1 6.3487 0.3160 -2.7684 11 1 6.5974 2.1711 -1.2265 12 1 6.4690 -0.0985 -0.3821 13 6 1.6535 2.1201 1.3162 14 1 0.5701 2.1070 1.4355 15 6 2.3207 1.3876 2.4993 16 6 2.7157 2.5531 3.4482 17 6 3.0965 3.6642 2.4381 18 7 2.1400 3.5074 1.3261 19 6 1.7725 4.4748 0.4626 20 6 2.4376 5.8260 0.5170 21 8 0.9063 4.2580 -0.3583 22 1 -0.3633 0.4361 -0.9305 23 1 -0.3634 -1.0239 0.0876 24 1 -0.3634 0.5879 0.8429 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.4008 0.6590 -2.2456 28 1 1.6137 0.7148 2.9846 29 1 3.2056 0.8446 2.1672 30 1 3.5691 2.2803 4.0690 31 1 1.8689 2.8577 4.0632 32 1 4.1173 3.5211 2.0840 33 1 2.9872 4.6471 2.8963 34 1 3.3104 5.8279 -0.1359 35 1 1.7348 6.5906 0.1863 36 1 2.7489 6.0367 1.5403 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260614840.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:29 Heat of formation + Delta-G solvation = -73.686587 kcal Electronic energy + Delta-G solvation = -16850.979186 eV Core-core repulsion = 14333.526168 eV Total energy + Delta-G solvation = -2517.453018 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.13389 -38.69068 -36.52257 -33.66573 -32.66084 -30.82946 -29.63401 -27.60534 -25.13521 -24.10873 -22.65992 -21.10864 -20.04944 -18.57682 -17.58189 -17.30012 -16.31563 -15.85756 -15.63351 -15.13818 -14.80414 -14.33497 -14.04036 -13.73968 -13.66492 -13.30869 -13.28008 -13.09810 -12.76635 -12.64625 -12.40460 -12.00526 -11.97359 -11.90684 -11.76564 -11.49992 -11.18896 -10.76302 -10.39564 -10.22804 -9.35092 -8.45023 -6.16233 1.51803 1.60599 1.76233 1.77621 2.32394 2.63120 3.32205 3.69919 3.80082 4.07769 4.15967 4.25792 4.39624 4.46574 4.48478 4.59295 4.60065 4.66248 4.67927 4.84265 5.00013 5.03120 5.06311 5.13144 5.18314 5.22365 5.28480 5.43777 5.58497 5.60890 5.93410 6.20785 6.37812 6.75910 6.82040 7.34810 7.64331 8.90547 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.019966 B = 0.012445 C = 0.011072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.068494 B = 2249.293442 C = 2528.251513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.112 4.112 3 C 0.026 3.974 4 H -0.027 1.027 5 C -0.569 4.569 6 H 0.060 0.940 7 C -0.043 4.043 8 N -0.950 5.950 9 Si 1.108 2.892 10 H -0.297 1.297 11 H -0.273 1.273 12 H -0.264 1.264 13 C 0.148 3.852 14 H 0.038 0.962 15 C -0.120 4.120 16 C -0.119 4.119 17 C 0.095 3.905 18 N -0.602 5.602 19 C 0.506 3.494 20 C -0.155 4.155 21 O -0.614 6.614 22 H 0.023 0.977 23 H 0.064 0.936 24 H 0.056 0.944 25 H 0.030 0.970 26 H 0.061 0.939 27 H 0.255 0.745 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.106 0.894 31 H 0.086 0.914 32 H 0.063 0.937 33 H 0.105 0.895 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.442 5.589 14.490 15.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.151 4.151 3 C 0.007 3.993 4 H -0.009 1.009 5 C -0.608 4.608 6 H 0.078 0.922 7 C -0.239 4.239 8 N -0.589 5.589 9 Si 0.931 3.069 10 H -0.223 1.223 11 H -0.199 1.199 12 H -0.189 1.189 13 C 0.044 3.956 14 H 0.056 0.944 15 C -0.158 4.158 16 C -0.157 4.157 17 C -0.026 4.026 18 N -0.333 5.333 19 C 0.297 3.703 20 C -0.214 4.214 21 O -0.498 6.498 22 H 0.042 0.958 23 H 0.083 0.917 24 H 0.075 0.925 25 H 0.048 0.952 26 H 0.079 0.921 27 H 0.066 0.934 28 H 0.101 0.899 29 H 0.094 0.906 30 H 0.124 0.876 31 H 0.104 0.896 32 H 0.081 0.919 33 H 0.123 0.877 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 2.217 5.173 13.020 14.184 hybrid contribution -1.603 0.153 0.050 1.611 sum 0.614 5.327 13.070 14.127 Atomic orbital electron populations 1.21774 0.96602 1.01191 1.00237 1.21542 0.94280 0.99005 1.00272 1.19044 0.95849 0.91719 0.92689 1.00876 1.22144 0.91784 1.43574 1.03263 0.92210 1.27114 1.10241 0.94113 0.92429 1.70868 1.06463 1.49223 1.32374 0.83063 0.70341 0.77498 0.75991 1.22331 1.19859 1.18892 1.21513 0.95623 0.81475 0.96965 0.94358 1.22706 1.01323 0.97943 0.93803 1.22811 1.03023 0.93566 0.96299 1.22597 0.92586 1.01246 0.86204 1.48591 1.43813 1.10001 1.30917 1.21315 0.82219 0.87738 0.79063 1.21859 1.02196 0.91292 1.06090 1.90638 1.35670 1.83759 1.39693 0.95752 0.91655 0.92499 0.95173 0.92069 0.93446 0.89877 0.90641 0.87588 0.89588 0.91857 0.87662 0.88888 0.88656 0.86899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.78 9.79 71.98 0.70 -5.08 16 2 C -0.11 -5.36 4.94 30.60 0.15 -5.21 16 3 C 0.03 1.36 1.14 -11.54 -0.01 1.34 16 4 H -0.03 -1.72 6.54 -2.39 -0.02 -1.74 16 5 C -0.57 -30.78 7.06 25.60 0.18 -30.60 16 6 H 0.06 3.04 5.92 -2.91 -0.02 3.02 16 7 C -0.04 -2.45 5.22 84.66 0.44 -2.01 16 8 N -0.95 -60.80 13.07 21.45 0.28 -60.52 16 9 Si 1.11 50.41 29.91 68.60 2.05 52.46 16 10 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 11 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 12 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 13 C 0.15 6.14 2.38 45.34 0.11 6.25 16 14 H 0.04 1.66 6.48 -2.39 -0.02 1.64 16 15 C -0.12 -3.85 4.98 31.87 0.16 -3.69 16 16 C -0.12 -2.73 7.09 32.07 0.23 -2.51 16 17 C 0.10 2.54 6.22 86.84 0.54 3.08 16 18 N -0.60 -23.00 2.66 -787.83 -2.09 -25.09 16 19 C 0.51 21.04 7.70 87.66 0.68 21.72 16 20 C -0.16 -4.31 9.95 71.24 0.71 -3.60 16 21 O -0.61 -32.67 16.32 -3.04 -0.05 -32.72 16 22 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 23 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 24 H 0.06 2.15 6.37 -2.39 -0.02 2.14 16 25 H 0.03 1.63 6.09 -2.39 -0.01 1.62 16 26 H 0.06 2.66 7.01 -2.39 -0.02 2.64 16 27 H 0.25 16.90 5.79 -92.71 -0.54 16.36 16 28 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.07 2.76 6.21 -2.38 -0.01 2.75 16 30 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.06 1.80 7.58 -2.39 -0.02 1.78 16 33 H 0.11 1.96 6.88 -2.39 -0.02 1.94 16 34 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 35 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.11 2.16 6.51 -2.38 -0.02 2.15 16 Total: -1.00 -77.43 278.14 5.36 -72.07 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: 1.29 Total: 14.10 kcal Atomic # 6 Polarization: -24.19 SS G_CDS: 3.88 Total: -20.30 kcal Atomic # 7 Polarization: -83.80 SS G_CDS: -1.81 Total: -85.61 kcal Atomic # 8 Polarization: -32.67 SS G_CDS: -0.05 Total: -32.72 kcal Atomic # 14 Polarization: 50.41 SS G_CDS: 2.05 Total: 52.46 kcal Total: -77.43 5.36 -72.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260614840.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.617 kcal (2) G-P(sol) polarization free energy of solvation -77.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds