Wall clock time and date at job start Mon Mar 30 2020 03:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53008 * 109.46553 * 2 1 4 4 H 1.09002 * 109.47017 * 304.59898 * 3 2 1 5 5 C 1.50705 * 109.46837 * 184.60089 * 3 2 1 6 6 H 1.07991 * 119.99965 * 240.00168 * 5 3 2 7 7 C 1.37878 * 120.00058 * 60.00181 * 5 3 2 8 8 N 1.31519 * 119.99651 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00223 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46853 * 59.99580 * 9 7 5 11 11 H 1.48497 * 109.47324 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.46947 * 299.99857 * 9 7 5 13 13 C 1.52993 * 109.47043 * 64.60279 * 3 2 1 14 14 H 1.09000 * 110.88995 * 302.22662 * 13 3 2 15 15 C 1.54632 * 110.96781 * 178.42151 * 13 3 2 16 16 C 1.51289 * 104.25361 * 266.45874 * 15 13 3 17 17 O 1.21281 * 124.94497 * 164.01107 * 16 15 13 18 18 N 1.34422 * 110.11401 * 344.14128 * 16 15 13 19 19 C 1.46501 * 124.34624 * 179.43128 * 18 16 15 20 20 C 1.52994 * 109.47303 * 269.70652 * 19 18 16 21 21 C 1.46760 * 111.29940 * 359.17749 * 18 16 15 22 22 H 1.09004 * 109.46339 * 174.19089 * 1 2 3 23 23 H 1.09000 * 109.47462 * 294.18525 * 1 2 3 24 24 H 1.08997 * 109.47168 * 54.19400 * 1 2 3 25 25 H 1.08998 * 109.46901 * 240.00506 * 2 1 3 26 26 H 1.09000 * 109.47485 * 119.99754 * 2 1 3 27 27 H 0.97002 * 119.99762 * 180.02562 * 8 7 5 28 28 H 1.08997 * 110.48670 * 25.35435 * 15 13 3 29 29 H 1.09000 * 110.48528 * 147.87318 * 15 13 3 30 30 H 1.08998 * 109.46523 * 149.70715 * 19 18 16 31 31 H 1.08994 * 109.47038 * 29.71112 * 19 18 16 32 32 H 1.09002 * 109.47297 * 299.99921 * 20 19 18 33 33 H 1.08998 * 109.47336 * 180.02562 * 20 19 18 34 34 H 1.08998 * 109.47280 * 60.00526 * 20 19 18 35 35 H 1.08993 * 110.24608 * 136.28022 * 21 18 16 36 36 H 1.09007 * 110.24142 * 258.18850 * 21 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6108 1.9796 -0.8459 5 6 3.5426 1.4442 -0.1140 6 1 4.1428 1.8906 0.6650 7 6 4.1513 0.8758 -1.2128 8 7 3.4204 0.3318 -2.1613 9 14 6.0139 0.8784 -1.3545 10 1 6.5989 0.1472 -0.2020 11 1 6.4151 0.2110 -2.6189 12 1 6.5083 2.2787 -1.3549 13 6 1.6266 2.1296 1.3030 14 1 0.5440 2.1066 1.4281 15 6 2.1590 3.5804 1.3568 16 6 3.4770 3.4665 2.0907 17 8 4.3395 4.3190 2.1059 18 7 3.5542 2.2818 2.7212 19 6 4.7034 1.8420 3.5162 20 6 5.6896 1.0942 2.6168 21 6 2.3369 1.4883 2.5157 22 1 -0.3632 -1.0225 -0.1040 23 1 -0.3634 0.4210 0.9374 24 1 -0.3633 0.6012 -0.8334 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 3.8486 -0.0684 -2.9342 28 1 2.3122 3.9680 0.3496 29 1 1.4704 4.2191 1.9099 30 1 4.3626 1.1792 4.3116 31 1 5.1966 2.7102 3.9531 32 1 5.1964 0.2258 2.1798 33 1 6.5444 0.7665 3.2084 34 1 6.0305 1.7569 1.8214 35 1 2.5946 0.4520 2.2972 36 1 1.6996 1.5398 3.3985 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260638138.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:01 Heat of formation + Delta-G solvation = -63.366312 kcal Electronic energy + Delta-G solvation = -16967.526605 eV Core-core repulsion = 14450.521107 eV Total energy + Delta-G solvation = -2517.005498 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.51877 -38.07565 -36.24782 -34.36697 -33.14693 -30.53223 -28.68887 -27.91091 -25.28567 -24.05642 -22.84958 -20.65026 -19.99126 -18.33419 -17.65300 -17.00440 -16.33405 -16.06056 -15.32651 -14.89292 -14.84077 -14.53416 -14.04682 -13.97798 -13.57255 -13.19239 -13.13826 -12.91966 -12.82587 -12.56825 -12.46031 -12.30817 -12.15012 -11.92742 -11.59783 -11.26997 -10.75035 -10.67121 -10.50691 -10.25533 -9.36165 -8.01698 -6.07333 1.31438 1.35409 1.41038 1.77010 2.37677 2.43808 3.27707 3.68996 3.85549 4.19761 4.25483 4.35160 4.41369 4.54467 4.71156 4.74991 4.80134 4.85575 4.91735 4.95778 4.98474 5.08437 5.20313 5.33421 5.40593 5.47003 5.53788 5.70768 5.82717 5.88218 6.09834 6.31589 6.37169 6.55444 7.07498 7.38409 7.59459 9.02175 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.018794 B = 0.016052 C = 0.010919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.472865 B = 1743.936895 C = 2563.671644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.113 4.113 3 C 0.054 3.946 4 H -0.003 1.003 5 C -0.509 4.509 6 H 0.072 0.928 7 C 0.021 3.979 8 N -0.914 5.914 9 Si 0.909 3.091 10 H -0.263 1.263 11 H -0.290 1.290 12 H -0.295 1.295 13 C -0.085 4.085 14 H 0.110 0.890 15 C -0.140 4.140 16 C 0.520 3.480 17 O -0.603 6.603 18 N -0.608 5.608 19 C 0.124 3.876 20 C -0.164 4.164 21 C 0.117 3.883 22 H 0.044 0.956 23 H 0.067 0.933 24 H 0.034 0.966 25 H 0.053 0.947 26 H 0.041 0.959 27 H 0.253 0.747 28 H 0.077 0.923 29 H 0.120 0.880 30 H 0.112 0.888 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.085 0.915 34 H 0.017 0.983 35 H 0.076 0.924 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.904 -1.090 11.091 12.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.151 4.151 3 C 0.035 3.965 4 H 0.016 0.984 5 C -0.547 4.547 6 H 0.090 0.910 7 C -0.176 4.176 8 N -0.556 5.556 9 Si 0.738 3.262 10 H -0.188 1.188 11 H -0.216 1.216 12 H -0.221 1.221 13 C -0.104 4.104 14 H 0.128 0.872 15 C -0.180 4.180 16 C 0.311 3.689 17 O -0.486 6.486 18 N -0.339 5.339 19 C 0.002 3.998 20 C -0.222 4.222 21 C -0.005 4.005 22 H 0.063 0.937 23 H 0.086 0.914 24 H 0.053 0.947 25 H 0.071 0.929 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.096 0.904 29 H 0.138 0.862 30 H 0.130 0.870 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.103 0.897 34 H 0.037 0.963 35 H 0.095 0.905 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.377 -0.812 10.997 11.864 hybrid contribution 1.552 -0.022 -1.015 1.855 sum -2.825 -0.835 9.982 10.407 Atomic orbital electron populations 1.21767 0.96413 1.00320 1.01115 1.21453 0.94058 0.98855 1.00732 1.18697 0.93736 0.92744 0.91278 0.98441 1.21963 0.93548 1.34546 1.04692 0.90974 1.25388 0.99301 0.96443 0.96499 1.69984 1.35124 1.40453 1.10025 0.86389 0.85014 0.77332 0.77466 1.18770 1.21631 1.22144 1.22276 1.00199 0.92138 0.95779 0.87245 1.22305 0.94578 1.00011 1.01101 1.21255 0.88972 0.81069 0.77611 1.90587 1.46711 1.46016 1.65255 1.48349 1.18364 1.17238 1.49989 1.21389 0.85814 0.99343 0.93256 1.22146 1.00078 1.00214 0.99750 1.22251 0.84443 0.95968 0.97795 0.93671 0.91369 0.94659 0.92885 0.94041 0.93769 0.90440 0.86242 0.86970 0.91176 0.92741 0.89660 0.96330 0.90534 0.88723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.50 9.53 71.98 0.69 -3.82 16 2 C -0.11 -4.66 5.14 30.60 0.16 -4.50 16 3 C 0.05 2.36 1.54 -11.54 -0.02 2.34 16 4 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 5 C -0.51 -25.95 7.33 25.60 0.19 -25.76 16 6 H 0.07 3.66 3.01 -2.92 -0.01 3.65 16 7 C 0.02 1.17 5.29 84.65 0.45 1.62 16 8 N -0.91 -52.06 11.29 21.45 0.24 -51.82 16 9 Si 0.91 45.21 29.51 68.60 2.02 47.23 16 10 H -0.26 -12.40 7.11 99.48 0.71 -11.70 16 11 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 12 H -0.29 -15.35 7.11 99.48 0.71 -14.65 16 13 C -0.09 -2.83 2.87 -9.74 -0.03 -2.86 16 14 H 0.11 2.90 6.68 -2.39 -0.02 2.88 16 15 C -0.14 -4.94 6.07 30.59 0.19 -4.75 16 16 C 0.52 21.34 6.19 87.90 0.54 21.89 16 17 O -0.60 -29.52 17.59 -3.03 -0.05 -29.57 16 18 N -0.61 -21.06 1.94 -818.01 -1.59 -22.65 16 19 C 0.12 3.70 6.66 86.38 0.57 4.28 16 20 C -0.16 -5.57 9.35 71.98 0.67 -4.90 16 21 C 0.12 3.48 6.21 86.83 0.54 4.02 16 22 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.07 1.78 6.82 -2.39 -0.02 1.76 16 24 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.05 2.65 5.96 -2.39 -0.01 2.64 16 26 H 0.04 1.61 6.35 -2.39 -0.02 1.59 16 27 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 28 H 0.08 3.13 7.90 -2.39 -0.02 3.11 16 29 H 0.12 3.27 8.14 -2.39 -0.02 3.25 16 30 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.07 2.14 7.92 -2.39 -0.02 2.12 16 32 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.02 0.75 7.72 -2.39 -0.02 0.73 16 35 H 0.08 2.44 6.09 -2.39 -0.01 2.43 16 36 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 Total: -1.00 -66.27 279.72 5.63 -60.64 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: 1.05 Total: 8.62 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: 3.95 Total: -12.45 kcal Atomic # 7 Polarization: -73.12 SS G_CDS: -1.35 Total: -74.47 kcal Atomic # 8 Polarization: -29.52 SS G_CDS: -0.05 Total: -29.57 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.02 Total: 47.23 kcal Total: -66.27 5.63 -60.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260638138.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.723 kcal (2) G-P(sol) polarization free energy of solvation -66.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds