Wall clock time and date at job start Mon Mar 30 2020 03:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47092 * 2 1 4 4 H 1.08994 * 109.47241 * 184.71440 * 3 2 1 5 5 C 1.50703 * 109.46754 * 64.71589 * 3 2 1 6 6 H 1.07998 * 119.99988 * 242.63987 * 5 3 2 7 7 C 1.37881 * 119.99933 * 62.64423 * 5 3 2 8 8 N 1.31512 * 119.99949 * 196.68637 * 7 5 3 9 9 Si 1.86800 * 120.00218 * 16.68062 * 7 5 3 10 10 H 1.48499 * 109.47144 * 94.42496 * 9 7 5 11 11 H 1.48494 * 109.47258 * 214.43097 * 9 7 5 12 12 H 1.48507 * 109.46992 * 334.42938 * 9 7 5 13 13 C 1.52995 * 109.47078 * 304.72068 * 3 2 1 14 14 H 1.08991 * 109.40566 * 66.15339 * 13 3 2 15 15 C 1.53073 * 109.39976 * 306.32030 * 13 3 2 16 16 C 1.53347 * 108.42438 * 191.06226 * 15 13 3 17 17 C 1.52919 * 108.81060 * 67.45266 * 16 15 13 18 18 N 1.45821 * 110.45159 * 309.49831 * 17 16 15 19 19 C 1.46495 * 117.88690 * 198.93226 * 18 17 16 20 20 C 1.33355 * 124.16665 * 18.75497 * 18 17 16 21 21 O 1.21280 * 118.24730 * 177.98020 * 20 18 17 22 22 H 1.08999 * 109.47394 * 176.59709 * 1 2 3 23 23 H 1.08999 * 109.47449 * 296.59608 * 1 2 3 24 24 H 1.09000 * 109.47432 * 56.59800 * 1 2 3 25 25 H 1.09003 * 109.47156 * 240.00653 * 2 1 3 26 26 H 1.09002 * 109.47189 * 120.00444 * 2 1 3 27 27 H 0.96993 * 120.00117 * 179.97438 * 8 7 5 28 28 H 1.08996 * 109.66991 * 71.32923 * 15 13 3 29 29 H 1.08995 * 109.67510 * 310.79297 * 15 13 3 30 30 H 1.09006 * 109.60199 * 187.29051 * 16 15 13 31 31 H 1.08998 * 109.60452 * 307.61214 * 16 15 13 32 32 H 1.08993 * 109.30273 * 69.64106 * 17 16 15 33 33 H 1.09002 * 109.29990 * 189.01736 * 17 16 15 34 34 H 1.08994 * 109.47065 * 179.83788 * 19 18 17 35 35 H 1.09007 * 109.46743 * 299.82998 * 19 18 17 36 36 H 1.08994 * 109.47137 * 59.83204 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1266 1.4437 -0.0845 5 6 1.6352 2.1183 1.2848 6 1 0.9749 2.9726 1.2608 7 6 2.1081 1.6461 2.4908 8 7 1.5209 2.0025 3.6123 9 14 3.5827 0.5001 2.5318 10 1 4.8199 1.2929 2.7470 11 1 3.4208 -0.4754 3.6395 12 1 3.6797 -0.2280 1.2411 13 6 1.4354 2.1972 -1.1856 14 1 0.3586 2.2903 -1.0446 15 6 1.7141 1.4232 -2.4765 16 6 1.3516 2.3195 -3.6668 17 6 2.3324 3.4916 -3.7182 18 7 2.4253 4.1358 -2.4132 19 6 2.9640 5.4970 -2.3579 20 6 2.0479 3.5660 -1.2682 21 8 2.2074 4.1864 -0.2384 22 1 -0.3634 -1.0258 -0.0610 23 1 -0.3634 0.4601 0.9189 24 1 -0.3634 0.5657 -0.8579 25 1 1.8933 -0.5137 -0.8901 26 1 1.8933 -0.5139 0.8900 27 1 1.8533 1.6700 4.4607 28 1 1.1069 0.5184 -2.5002 29 1 2.7703 1.1584 -2.5248 30 1 1.4193 1.7453 -4.5909 31 1 0.3365 2.6972 -3.5445 32 1 3.3172 3.1249 -4.0074 33 1 1.9898 4.2160 -4.4571 34 1 2.9690 5.8439 -1.3246 35 1 3.9822 5.5008 -2.7473 36 1 2.3420 6.1587 -2.9604 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260684714.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:43 Heat of formation + Delta-G solvation = -38.560967 kcal Electronic energy + Delta-G solvation = -16773.197795 eV Core-core repulsion = 14257.267938 eV Total energy + Delta-G solvation = -2515.929857 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.03738 -36.20621 -35.76586 -32.65883 -31.45832 -29.08166 -27.11865 -26.59852 -23.70948 -23.04609 -21.63764 -19.26313 -18.02662 -16.29576 -16.15481 -15.83195 -15.15678 -14.48832 -13.88883 -13.71749 -13.45724 -12.93098 -12.77500 -12.31936 -12.26557 -11.97944 -11.75794 -11.58169 -11.32671 -10.95797 -10.83605 -10.59383 -10.43722 -10.03764 -9.79036 -9.67574 -9.16279 -9.02198 -8.44093 -8.23055 -8.13267 -5.85546 -3.72588 3.40380 3.48354 3.49155 3.51406 3.52826 4.62026 4.95030 4.98242 5.09397 5.29811 5.46763 5.56888 5.62517 5.67172 5.78953 5.89338 5.95980 6.05132 6.16348 6.19397 6.23541 6.30474 6.42842 6.52996 6.68530 6.73301 6.89087 7.08569 7.28710 7.34612 7.49921 7.96906 8.04466 8.76914 9.01398 9.33263 9.80652 11.28440 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.029584 B = 0.010884 C = 0.009247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.242352 B = 2571.894004 C = 3027.332824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.116 4.116 3 C 0.033 3.967 4 H 0.019 0.981 5 C -0.480 4.480 6 H 0.082 0.918 7 C 0.071 3.929 8 N -0.900 5.900 9 Si 0.855 3.145 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.257 1.257 13 C -0.080 4.080 14 H 0.098 0.902 15 C -0.123 4.123 16 C -0.136 4.136 17 C 0.121 3.879 18 N -0.625 5.625 19 C 0.073 3.927 20 C 0.512 3.488 21 O -0.505 6.505 22 H 0.028 0.972 23 H 0.071 0.929 24 H 0.042 0.958 25 H 0.031 0.969 26 H 0.054 0.946 27 H 0.258 0.742 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.091 0.909 35 H 0.049 0.951 36 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.619 -0.245 -16.175 16.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.154 4.154 3 C 0.013 3.987 4 H 0.037 0.963 5 C -0.517 4.517 6 H 0.100 0.900 7 C -0.129 4.129 8 N -0.539 5.539 9 Si 0.683 3.317 10 H -0.212 1.212 11 H -0.218 1.218 12 H -0.181 1.181 13 C -0.101 4.101 14 H 0.116 0.884 15 C -0.161 4.161 16 C -0.173 4.173 17 C -0.003 4.003 18 N -0.363 5.363 19 C -0.070 4.070 20 C 0.300 3.700 21 O -0.378 6.378 22 H 0.047 0.953 23 H 0.090 0.910 24 H 0.061 0.939 25 H 0.049 0.951 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.109 0.891 35 H 0.068 0.932 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.691 0.046 -15.389 15.405 hybrid contribution 0.990 -0.568 0.024 1.141 sum 1.681 -0.522 -15.365 15.465 Atomic orbital electron populations 1.21702 0.96608 0.98757 1.02518 1.21901 0.95970 0.98508 0.99041 1.19023 0.94928 0.91338 0.93380 0.96296 1.20889 1.28991 1.14125 0.87735 0.90044 1.24871 0.96361 0.95914 0.95768 1.69977 1.39520 1.46611 0.97786 0.87341 0.85148 0.81322 0.77903 1.21247 1.21776 1.18132 1.21229 1.01714 0.90916 0.96234 0.88370 1.21851 1.01996 0.98641 0.93582 1.21886 0.99401 0.96460 0.99589 1.21229 0.99269 0.95033 0.84719 1.47424 1.65518 1.16236 1.07091 1.21607 0.97404 0.83519 1.04471 1.20479 0.78037 0.89096 0.82372 1.90774 1.52508 1.62405 1.32100 0.95294 0.91024 0.93877 0.95061 0.92786 0.93219 0.90650 0.91758 0.90593 0.91267 0.92652 0.91679 0.89074 0.93240 0.93233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.13 37.16 0.34 -2.34 16 2 C -0.12 -2.46 4.40 -26.73 -0.12 -2.58 16 3 C 0.03 0.77 1.15 -91.77 -0.11 0.66 16 4 H 0.02 0.48 6.85 -51.93 -0.36 0.12 16 5 C -0.48 -13.75 6.51 -34.44 -0.22 -13.98 16 6 H 0.08 2.62 7.09 -52.49 -0.37 2.25 16 7 C 0.07 2.10 5.31 -17.82 -0.09 2.01 16 8 N -0.90 -28.54 13.96 55.43 0.77 -27.77 16 9 Si 0.85 22.22 25.75 -169.99 -4.38 17.84 16 10 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 11 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 12 H -0.26 -6.19 5.49 56.52 0.31 -5.88 16 13 C -0.08 -1.57 1.41 -91.99 -0.13 -1.70 16 14 H 0.10 1.97 6.64 -51.93 -0.34 1.63 16 15 C -0.12 -1.83 4.32 -26.51 -0.11 -1.94 16 16 C -0.14 -1.57 6.01 -26.59 -0.16 -1.73 16 17 C 0.12 1.45 6.41 -4.45 -0.03 1.42 16 18 N -0.63 -10.22 3.21 -182.81 -0.59 -10.81 16 19 C 0.07 1.05 10.47 59.84 0.63 1.68 16 20 C 0.51 10.70 7.04 -11.87 -0.08 10.62 16 21 O -0.51 -13.05 13.16 5.56 0.07 -12.97 16 22 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.07 1.60 7.48 -51.93 -0.39 1.21 16 24 H 0.04 0.74 5.70 -51.93 -0.30 0.45 16 25 H 0.03 0.57 6.88 -51.93 -0.36 0.21 16 26 H 0.05 1.24 4.84 -51.93 -0.25 0.99 16 27 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 28 H 0.07 1.04 6.47 -51.93 -0.34 0.71 16 29 H 0.06 0.97 8.10 -51.93 -0.42 0.55 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.81 8.12 -51.93 -0.42 0.39 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.63 8.11 -51.93 -0.42 0.21 16 34 H 0.09 1.55 6.59 -51.93 -0.34 1.21 16 35 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 269.82 15.07 4.07 4.07 Total: -1.00 -33.74 269.82 -5.79 -39.53 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: -5.65 Total: -2.01 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: -0.09 Total: -7.88 kcal Atomic # 7 Polarization: -38.76 SS G_CDS: 0.19 Total: -38.58 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.07 Total: -12.97 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.38 Total: 17.84 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -33.74 -5.79 -39.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260684714.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.968 kcal (2) G-P(sol) polarization free energy of solvation -33.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds