Wall clock time and date at job start Mon Mar 30 2020 03:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47092 * 2 1 4 4 H 1.08994 * 109.47241 * 184.71440 * 3 2 1 5 5 C 1.50703 * 109.46754 * 64.71589 * 3 2 1 6 6 H 1.07998 * 119.99988 * 242.63987 * 5 3 2 7 7 C 1.37881 * 119.99933 * 62.64423 * 5 3 2 8 8 N 1.31512 * 119.99949 * 196.68637 * 7 5 3 9 9 Si 1.86800 * 120.00218 * 16.68062 * 7 5 3 10 10 H 1.48499 * 109.47144 * 94.42496 * 9 7 5 11 11 H 1.48494 * 109.47258 * 214.43097 * 9 7 5 12 12 H 1.48507 * 109.46992 * 334.42938 * 9 7 5 13 13 C 1.52995 * 109.47078 * 304.72068 * 3 2 1 14 14 H 1.08991 * 109.40566 * 66.15339 * 13 3 2 15 15 C 1.53073 * 109.39976 * 306.32030 * 13 3 2 16 16 C 1.53347 * 108.42438 * 191.06226 * 15 13 3 17 17 C 1.52919 * 108.81060 * 67.45266 * 16 15 13 18 18 N 1.45821 * 110.45159 * 309.49831 * 17 16 15 19 19 C 1.46495 * 117.88690 * 198.93226 * 18 17 16 20 20 C 1.33355 * 124.16665 * 18.75497 * 18 17 16 21 21 O 1.21280 * 118.24730 * 177.98020 * 20 18 17 22 22 H 1.08999 * 109.47394 * 176.59709 * 1 2 3 23 23 H 1.08999 * 109.47449 * 296.59608 * 1 2 3 24 24 H 1.09000 * 109.47432 * 56.59800 * 1 2 3 25 25 H 1.09003 * 109.47156 * 240.00653 * 2 1 3 26 26 H 1.09002 * 109.47189 * 120.00444 * 2 1 3 27 27 H 0.96993 * 120.00117 * 179.97438 * 8 7 5 28 28 H 1.08996 * 109.66991 * 71.32923 * 15 13 3 29 29 H 1.08995 * 109.67510 * 310.79297 * 15 13 3 30 30 H 1.09006 * 109.60199 * 187.29051 * 16 15 13 31 31 H 1.08998 * 109.60452 * 307.61214 * 16 15 13 32 32 H 1.08993 * 109.30273 * 69.64106 * 17 16 15 33 33 H 1.09002 * 109.29990 * 189.01736 * 17 16 15 34 34 H 1.08994 * 109.47065 * 179.83788 * 19 18 17 35 35 H 1.09007 * 109.46743 * 299.82998 * 19 18 17 36 36 H 1.08994 * 109.47137 * 59.83204 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1266 1.4437 -0.0845 5 6 1.6352 2.1183 1.2848 6 1 0.9749 2.9726 1.2608 7 6 2.1081 1.6461 2.4908 8 7 1.5209 2.0025 3.6123 9 14 3.5827 0.5001 2.5318 10 1 4.8199 1.2929 2.7470 11 1 3.4208 -0.4754 3.6395 12 1 3.6797 -0.2280 1.2411 13 6 1.4354 2.1972 -1.1856 14 1 0.3586 2.2903 -1.0446 15 6 1.7141 1.4232 -2.4765 16 6 1.3516 2.3195 -3.6668 17 6 2.3324 3.4916 -3.7182 18 7 2.4253 4.1358 -2.4132 19 6 2.9640 5.4970 -2.3579 20 6 2.0479 3.5660 -1.2682 21 8 2.2074 4.1864 -0.2384 22 1 -0.3634 -1.0258 -0.0610 23 1 -0.3634 0.4601 0.9189 24 1 -0.3634 0.5657 -0.8579 25 1 1.8933 -0.5137 -0.8901 26 1 1.8933 -0.5139 0.8900 27 1 1.8533 1.6700 4.4607 28 1 1.1069 0.5184 -2.5002 29 1 2.7703 1.1584 -2.5248 30 1 1.4193 1.7453 -4.5909 31 1 0.3365 2.6972 -3.5445 32 1 3.3172 3.1249 -4.0074 33 1 1.9898 4.2160 -4.4571 34 1 2.9690 5.8439 -1.3246 35 1 3.9822 5.5008 -2.7473 36 1 2.3420 6.1587 -2.9604 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260684714.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:43 Heat of formation + Delta-G solvation = -62.801401 kcal Electronic energy + Delta-G solvation = -16774.248939 eV Core-core repulsion = 14257.267938 eV Total energy + Delta-G solvation = -2516.981001 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.50159 -37.86232 -37.19115 -34.38237 -33.27203 -30.53152 -28.83417 -27.86664 -25.34191 -24.69344 -22.88187 -20.99035 -19.39261 -18.39201 -17.58376 -17.29457 -16.64491 -16.18603 -15.36602 -15.13270 -15.02747 -14.56330 -14.31598 -14.04486 -13.54204 -13.47646 -13.14356 -13.03760 -12.86458 -12.67096 -12.39328 -11.98160 -11.88452 -11.72039 -11.53543 -11.41664 -11.02152 -10.86134 -10.38527 -10.17174 -9.52974 -8.15599 -6.05022 1.30826 1.36238 1.44367 1.90434 2.25551 2.42605 3.19531 3.84190 3.96198 3.98622 4.10043 4.35711 4.48580 4.52994 4.58956 4.64891 4.69980 4.75129 4.80646 4.92466 5.00379 5.03270 5.11466 5.16313 5.21423 5.36842 5.44434 5.54764 5.63425 5.72175 5.72498 5.89246 6.48608 6.68473 6.96209 7.48439 7.52546 9.02886 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.029584 B = 0.010884 C = 0.009247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.242352 B = 2571.894004 C = 3027.332824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.115 4.115 3 C 0.030 3.970 4 H 0.007 0.993 5 C -0.466 4.466 6 H 0.027 0.973 7 C 0.003 3.997 8 N -0.956 5.956 9 Si 0.918 3.082 10 H -0.295 1.295 11 H -0.288 1.288 12 H -0.220 1.220 13 C -0.079 4.079 14 H 0.086 0.914 15 C -0.117 4.117 16 C -0.129 4.129 17 C 0.109 3.891 18 N -0.619 5.619 19 C 0.069 3.931 20 C 0.501 3.499 21 O -0.577 6.577 22 H 0.060 0.940 23 H 0.026 0.974 24 H 0.063 0.937 25 H 0.075 0.925 26 H 0.034 0.966 27 H 0.257 0.743 28 H 0.093 0.907 29 H 0.067 0.933 30 H 0.118 0.882 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.099 0.901 34 H 0.052 0.948 35 H 0.075 0.925 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.439 -2.155 -20.507 20.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.152 4.152 3 C 0.011 3.989 4 H 0.025 0.975 5 C -0.504 4.504 6 H 0.045 0.955 7 C -0.191 4.191 8 N -0.598 5.598 9 Si 0.743 3.257 10 H -0.223 1.223 11 H -0.214 1.214 12 H -0.142 1.142 13 C -0.100 4.100 14 H 0.104 0.896 15 C -0.154 4.154 16 C -0.167 4.167 17 C -0.012 4.012 18 N -0.354 5.354 19 C -0.073 4.073 20 C 0.291 3.709 21 O -0.455 6.455 22 H 0.079 0.921 23 H 0.045 0.955 24 H 0.082 0.918 25 H 0.093 0.907 26 H 0.052 0.948 27 H 0.066 0.934 28 H 0.112 0.888 29 H 0.086 0.914 30 H 0.137 0.863 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.117 0.883 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.516 -1.878 -19.825 19.971 hybrid contribution 0.678 0.173 1.281 1.460 sum 2.193 -1.705 -18.543 18.750 Atomic orbital electron populations 1.21622 0.95543 1.00652 1.01159 1.21831 0.96973 0.96354 1.00090 1.18999 0.94366 0.93199 0.92337 0.97513 1.21082 1.26880 1.11982 0.90456 0.95489 1.25737 0.99399 0.98593 0.95399 1.70145 1.41703 1.49467 0.98518 0.86319 0.80340 0.79367 0.79648 1.22263 1.21389 1.14210 1.21133 1.00437 0.90837 0.97629 0.89566 1.21833 1.02646 0.99172 0.91776 1.21911 0.99035 0.95971 0.99743 1.21672 1.00845 0.96052 0.82623 1.47527 1.63483 1.16777 1.07613 1.21742 0.99594 0.83088 1.02905 1.20798 0.77873 0.89421 0.82848 1.90752 1.55707 1.64087 1.34956 0.92109 0.95520 0.91771 0.90700 0.94765 0.93446 0.88830 0.91392 0.86343 0.91388 0.90695 0.88319 0.92901 0.90637 0.90107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.91 9.13 71.98 0.66 -4.25 16 2 C -0.11 -4.58 4.40 30.59 0.13 -4.44 16 3 C 0.03 1.42 1.15 -11.54 -0.01 1.40 16 4 H 0.01 0.33 6.85 -2.39 -0.02 0.32 16 5 C -0.47 -28.11 6.51 25.60 0.17 -27.94 16 6 H 0.03 1.88 7.09 -2.91 -0.02 1.86 16 7 C 0.00 0.19 5.31 84.66 0.45 0.64 16 8 N -0.96 -64.30 13.96 21.45 0.30 -64.00 16 9 Si 0.92 46.96 25.75 68.60 1.77 48.72 16 10 H -0.30 -15.43 7.11 99.48 0.71 -14.73 16 11 H -0.29 -14.42 7.11 99.48 0.71 -13.72 16 12 H -0.22 -9.83 5.49 99.48 0.55 -9.28 16 13 C -0.08 -3.05 1.41 -11.68 -0.02 -3.07 16 14 H 0.09 3.48 6.64 -2.39 -0.02 3.47 16 15 C -0.12 -2.96 4.32 30.73 0.13 -2.83 16 16 C -0.13 -2.29 6.01 30.68 0.18 -2.11 16 17 C 0.11 2.08 6.41 86.48 0.55 2.63 16 18 N -0.62 -19.01 3.21 -851.46 -2.73 -21.74 16 19 C 0.07 1.89 10.47 127.77 1.34 3.23 16 20 C 0.50 21.17 7.04 87.72 0.62 21.78 16 21 O -0.58 -31.64 13.16 -3.03 -0.04 -31.68 16 22 H 0.06 1.85 8.14 -2.39 -0.02 1.84 16 23 H 0.03 1.20 7.48 -2.39 -0.02 1.18 16 24 H 0.06 2.07 5.70 -2.39 -0.01 2.06 16 25 H 0.07 2.37 6.88 -2.39 -0.02 2.35 16 26 H 0.03 1.49 4.84 -2.39 -0.01 1.48 16 27 H 0.26 16.29 8.31 -92.71 -0.77 15.52 16 28 H 0.09 2.05 6.47 -2.39 -0.02 2.04 16 29 H 0.07 1.71 8.10 -2.39 -0.02 1.69 16 30 H 0.12 1.23 8.14 -2.38 -0.02 1.21 16 31 H 0.07 1.27 8.12 -2.39 -0.02 1.25 16 32 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.10 1.31 8.11 -2.39 -0.02 1.29 16 34 H 0.05 1.87 6.59 -2.39 -0.02 1.85 16 35 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 36 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -81.85 269.82 4.39 -77.46 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: 0.89 Total: 6.20 kcal Atomic # 6 Polarization: -19.16 SS G_CDS: 4.21 Total: -14.96 kcal Atomic # 7 Polarization: -83.30 SS G_CDS: -2.44 Total: -85.74 kcal Atomic # 8 Polarization: -31.64 SS G_CDS: -0.04 Total: -31.68 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 1.77 Total: 48.72 kcal Total: -81.85 4.39 -77.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260684714.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.662 kcal (2) G-P(sol) polarization free energy of solvation -81.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds