Wall clock time and date at job start Mon Mar 30 2020 03:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09004 * 109.46655 * 2 1 4 4 C 1.50697 * 109.46791 * 119.99669 * 2 1 3 5 5 H 1.08001 * 119.99685 * 120.00331 * 4 2 1 6 6 C 1.37875 * 120.00455 * 299.99772 * 4 2 1 7 7 N 1.31513 * 119.99758 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00220 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47106 * 60.00016 * 8 6 4 10 10 H 1.48496 * 109.47370 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.46906 * 300.00428 * 8 6 4 12 12 N 1.46499 * 109.46967 * 239.99855 * 2 1 3 13 13 C 1.32896 * 117.15447 * 294.37024 * 12 2 1 14 14 O 1.21274 * 118.28317 * 5.57668 * 13 12 2 15 15 C 1.50064 * 123.46949 * 185.31736 * 13 12 2 16 16 C 1.53249 * 110.06775 * 308.76279 * 15 13 12 17 17 C 1.52656 * 108.30866 * 91.56440 * 16 15 13 18 18 C 1.53293 * 109.45791 * 327.20164 * 17 16 15 19 19 C 1.45884 * 117.15504 * 114.63683 * 12 2 1 20 20 H 1.09002 * 109.19144 * 269.28114 * 19 12 2 21 21 C 1.53003 * 109.19439 * 28.59669 * 19 12 2 22 22 H 1.08995 * 109.46987 * 300.00257 * 1 2 3 23 23 H 1.09000 * 109.46958 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46970 * 60.00180 * 1 2 3 25 25 H 0.97005 * 119.99802 * 179.97438 * 7 6 4 26 26 H 1.09001 * 109.42931 * 188.51353 * 15 13 12 27 27 H 1.08994 * 109.21448 * 68.87852 * 15 13 12 28 28 H 1.08999 * 109.70053 * 331.85063 * 16 15 13 29 29 H 1.09004 * 109.72727 * 211.28479 * 16 15 13 30 30 H 1.08998 * 109.47129 * 207.21181 * 17 16 15 31 31 H 1.08998 * 109.47722 * 87.19974 * 17 16 15 32 32 H 1.08994 * 109.56650 * 180.02562 * 18 17 16 33 33 H 1.09001 * 109.56460 * 59.66536 * 18 17 16 34 34 H 1.08998 * 109.46937 * 51.46198 * 21 19 12 35 35 H 1.09007 * 109.46881 * 171.45217 * 21 19 12 36 36 H 1.08994 * 109.47486 * 291.45380 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 0.9429 0.8298 2.6034 8 14 2.3225 -1.1194 4.0080 9 1 3.8075 -1.1189 4.0078 10 1 1.8270 -0.4198 5.2205 11 1 1.8280 -2.5197 4.0082 12 7 2.0184 -0.6906 -1.1962 13 6 1.7605 -1.9907 -1.2936 14 8 1.0559 -2.5017 -0.4491 15 6 2.2905 -2.8591 -2.3968 16 6 1.9858 -2.2245 -3.7580 17 6 3.1706 -1.3470 -4.1540 18 6 3.8008 -0.7413 -2.8947 19 6 2.7505 0.1074 -2.1736 20 1 2.0496 0.5087 -2.9057 21 6 3.4469 1.2659 -1.4568 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 0.7082 1.1610 3.4844 26 1 1.8213 -3.8414 -2.3421 27 1 3.3689 -2.9676 -2.2812 28 1 1.0850 -1.6151 -3.6860 29 1 1.8418 -3.0059 -4.5043 30 1 2.8269 -0.5467 -4.8093 31 1 3.9119 -1.9515 -4.6766 32 1 4.6467 -0.1140 -3.1755 33 1 4.1395 -1.5405 -2.2355 34 1 4.0235 0.8792 -0.6165 35 1 4.1148 1.7745 -2.1521 36 1 2.6989 1.9694 -1.0912 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261038572.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:00 Heat of formation + Delta-G solvation = -31.173498 kcal Electronic energy + Delta-G solvation = -16955.103050 eV Core-core repulsion = 14439.493537 eV Total energy + Delta-G solvation = -2515.609512 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.97246 -36.38017 -35.09369 -32.65386 -30.92363 -29.09005 -27.82265 -25.31645 -25.00848 -22.30658 -21.17540 -19.77336 -18.10519 -16.44014 -16.01876 -15.21075 -14.77098 -14.54317 -14.09976 -13.54466 -13.10690 -12.84327 -12.40763 -12.26155 -12.15816 -11.54788 -11.30485 -11.18964 -11.12682 -10.85267 -10.70719 -10.60163 -10.43391 -10.26348 -10.20047 -9.85681 -9.79466 -9.03835 -8.46203 -8.06934 -7.42524 -5.88911 -3.89229 3.40347 3.44012 3.49966 3.74623 4.11000 4.57258 4.89689 4.96970 5.05846 5.16022 5.42614 5.49003 5.59973 5.62130 5.79978 5.87537 5.95952 6.05465 6.12564 6.18280 6.24615 6.28873 6.46493 6.55370 6.78920 6.94076 7.15865 7.32269 7.39959 7.86445 8.01357 8.23063 8.36534 8.84515 9.08011 9.40158 9.73301 11.17384 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.034641 B = 0.009793 C = 0.009149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.098996 B = 2858.558016 C = 3059.556073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.253 3.747 3 H 0.055 0.945 4 C -0.488 4.488 5 H 0.054 0.946 6 C 0.058 3.942 7 N -0.900 5.900 8 Si 0.895 3.105 9 H -0.280 1.280 10 H -0.289 1.289 11 H -0.278 1.278 12 N -0.590 5.590 13 C 0.507 3.493 14 O -0.531 6.531 15 C -0.144 4.144 16 C -0.116 4.116 17 C -0.120 4.120 18 C -0.139 4.139 19 C 0.146 3.854 20 H 0.057 0.943 21 C -0.159 4.159 22 H 0.086 0.914 23 H 0.051 0.949 24 H -0.001 1.001 25 H 0.259 0.741 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.054 0.946 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.323 -1.072 -12.658 13.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.153 3.847 3 H 0.072 0.928 4 C -0.527 4.527 5 H 0.072 0.928 6 C -0.142 4.142 7 N -0.540 5.540 8 Si 0.724 3.276 9 H -0.206 1.206 10 H -0.215 1.215 11 H -0.203 1.203 12 N -0.322 5.322 13 C 0.293 3.707 14 O -0.408 6.408 15 C -0.185 4.185 16 C -0.154 4.154 17 C -0.157 4.157 18 C -0.177 4.177 19 C 0.042 3.958 20 H 0.075 0.925 21 C -0.216 4.216 22 H 0.105 0.895 23 H 0.070 0.930 24 H 0.018 0.982 25 H 0.069 0.931 26 H 0.102 0.898 27 H 0.105 0.895 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.877 -1.231 -12.086 13.091 hybrid contribution 0.343 -0.441 0.803 0.978 sum 5.220 -1.672 -11.283 12.544 Atomic orbital electron populations 1.22138 0.98465 1.01175 0.99463 1.19064 0.91432 0.93181 0.81008 0.92790 1.21180 1.29971 1.11489 0.90012 0.92754 1.24814 0.95499 0.95187 0.98726 1.69864 1.37538 1.23313 1.23317 0.86601 0.78789 0.80010 0.82238 1.20594 1.21455 1.20335 1.47728 1.53857 1.08081 1.22574 1.19516 0.82091 0.82566 0.86521 1.90703 1.37318 1.71712 1.41097 1.21979 1.02733 0.99548 0.94193 1.21517 0.98834 0.99132 0.95895 1.21689 0.97511 0.99118 0.97419 1.22293 0.98195 1.00270 0.96961 1.20816 0.92643 0.91668 0.90705 0.92482 1.22217 1.00750 0.97725 1.00910 0.89507 0.92974 0.98178 0.93103 0.89790 0.89460 0.91583 0.91568 0.91853 0.92009 0.90945 0.90455 0.91048 0.92731 0.91426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.05 8.93 37.16 0.33 -3.72 16 2 C 0.25 6.47 2.14 -69.08 -0.15 6.32 16 3 H 0.05 1.39 5.03 -51.93 -0.26 1.13 16 4 C -0.49 -13.97 7.26 -34.44 -0.25 -14.22 16 5 H 0.05 1.62 7.08 -52.49 -0.37 1.25 16 6 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 7 N -0.90 -26.28 11.32 55.43 0.63 -25.66 16 8 Si 0.90 22.66 29.54 -169.99 -5.02 17.64 16 9 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 10 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 11 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 12 N -0.59 -12.55 2.70 -161.09 -0.44 -12.99 16 13 C 0.51 11.05 5.90 -12.13 -0.07 10.98 16 14 O -0.53 -14.19 13.21 5.56 0.07 -14.12 16 15 C -0.14 -2.31 5.37 -28.06 -0.15 -2.46 16 16 C -0.12 -1.50 5.74 -26.78 -0.15 -1.65 16 17 C -0.12 -1.34 5.71 -26.76 -0.15 -1.49 16 18 C -0.14 -1.83 5.12 -26.53 -0.14 -1.96 16 19 C 0.15 2.40 2.96 -68.22 -0.20 2.20 16 20 H 0.06 0.89 7.76 -51.93 -0.40 0.49 16 21 C -0.16 -2.56 7.91 37.16 0.29 -2.26 16 22 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 23 H 0.05 1.46 6.09 -51.93 -0.32 1.14 16 24 H 0.00 -0.02 8.14 -51.93 -0.42 -0.44 16 25 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 26 H 0.08 1.31 8.09 -51.93 -0.42 0.89 16 27 H 0.09 1.27 5.90 -51.93 -0.31 0.97 16 28 H 0.07 0.95 7.83 -51.93 -0.41 0.54 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.81 7.63 -51.93 -0.40 0.41 16 33 H 0.08 1.12 5.54 -51.93 -0.29 0.83 16 34 H 0.07 1.30 8.06 -51.93 -0.42 0.88 16 35 H 0.05 0.69 7.85 -51.92 -0.41 0.28 16 36 H 0.07 1.18 6.57 -51.93 -0.34 0.84 16 LS Contribution 270.76 15.07 4.08 4.08 Total: -1.00 -31.97 270.76 -6.88 -38.85 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -5.47 Total: -1.10 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: -0.73 Total: -6.71 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.19 Total: -38.65 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: 0.07 Total: -14.12 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -31.97 -6.88 -38.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261038572.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.675 kcal (2) G-P(sol) polarization free energy of solvation -31.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds