Wall clock time and date at job start Mon Mar 30 2020 03:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09004 * 109.46655 * 2 1 4 4 C 1.50697 * 109.46791 * 119.99669 * 2 1 3 5 5 H 1.08001 * 119.99685 * 120.00331 * 4 2 1 6 6 C 1.37875 * 120.00455 * 299.99772 * 4 2 1 7 7 N 1.31513 * 119.99758 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00220 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47106 * 60.00016 * 8 6 4 10 10 H 1.48496 * 109.47370 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.46906 * 300.00428 * 8 6 4 12 12 N 1.46499 * 109.46967 * 239.99855 * 2 1 3 13 13 C 1.32896 * 117.15447 * 294.37024 * 12 2 1 14 14 O 1.21274 * 118.28317 * 5.57668 * 13 12 2 15 15 C 1.50064 * 123.46949 * 185.31736 * 13 12 2 16 16 C 1.53249 * 110.06775 * 308.76279 * 15 13 12 17 17 C 1.52656 * 108.30866 * 91.56440 * 16 15 13 18 18 C 1.53293 * 109.45791 * 327.20164 * 17 16 15 19 19 C 1.45884 * 117.15504 * 114.63683 * 12 2 1 20 20 H 1.09002 * 109.19144 * 269.28114 * 19 12 2 21 21 C 1.53003 * 109.19439 * 28.59669 * 19 12 2 22 22 H 1.08995 * 109.46987 * 300.00257 * 1 2 3 23 23 H 1.09000 * 109.46958 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46970 * 60.00180 * 1 2 3 25 25 H 0.97005 * 119.99802 * 179.97438 * 7 6 4 26 26 H 1.09001 * 109.42931 * 188.51353 * 15 13 12 27 27 H 1.08994 * 109.21448 * 68.87852 * 15 13 12 28 28 H 1.08999 * 109.70053 * 331.85063 * 16 15 13 29 29 H 1.09004 * 109.72727 * 211.28479 * 16 15 13 30 30 H 1.08998 * 109.47129 * 207.21181 * 17 16 15 31 31 H 1.08998 * 109.47722 * 87.19974 * 17 16 15 32 32 H 1.08994 * 109.56650 * 180.02562 * 18 17 16 33 33 H 1.09001 * 109.56460 * 59.66536 * 18 17 16 34 34 H 1.08998 * 109.46937 * 51.46198 * 21 19 12 35 35 H 1.09007 * 109.46881 * 171.45217 * 21 19 12 36 36 H 1.08994 * 109.47486 * 291.45380 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 0.9429 0.8298 2.6034 8 14 2.3225 -1.1194 4.0080 9 1 3.8075 -1.1189 4.0078 10 1 1.8270 -0.4198 5.2205 11 1 1.8280 -2.5197 4.0082 12 7 2.0184 -0.6906 -1.1962 13 6 1.7605 -1.9907 -1.2936 14 8 1.0559 -2.5017 -0.4491 15 6 2.2905 -2.8591 -2.3968 16 6 1.9858 -2.2245 -3.7580 17 6 3.1706 -1.3470 -4.1540 18 6 3.8008 -0.7413 -2.8947 19 6 2.7505 0.1074 -2.1736 20 1 2.0496 0.5087 -2.9057 21 6 3.4469 1.2659 -1.4568 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 0.7082 1.1610 3.4844 26 1 1.8213 -3.8414 -2.3421 27 1 3.3689 -2.9676 -2.2812 28 1 1.0850 -1.6151 -3.6860 29 1 1.8418 -3.0059 -4.5043 30 1 2.8269 -0.5467 -4.8093 31 1 3.9119 -1.9515 -4.6766 32 1 4.6467 -0.1140 -3.1755 33 1 4.1395 -1.5405 -2.2355 34 1 4.0235 0.8792 -0.6165 35 1 4.1148 1.7745 -2.1521 36 1 2.6989 1.9694 -1.0912 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261038572.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:00 Heat of formation + Delta-G solvation = -51.629819 kcal Electronic energy + Delta-G solvation = -16955.990103 eV Core-core repulsion = 14439.493537 eV Total energy + Delta-G solvation = -2516.496565 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.53676 -37.86816 -36.74672 -34.54264 -32.51490 -30.90437 -29.12088 -27.25541 -26.57598 -23.68512 -23.03313 -20.89135 -19.73121 -18.44854 -17.57922 -16.88045 -16.38284 -16.17038 -15.51559 -15.07976 -14.66003 -14.30933 -14.17978 -13.71071 -13.51211 -13.27508 -13.12745 -12.81754 -12.69491 -12.56453 -12.39135 -12.19590 -12.09796 -11.98488 -11.56393 -11.39255 -11.14866 -11.03885 -10.54684 -10.01794 -9.21455 -8.09194 -6.15636 1.34130 1.38807 1.45443 2.08372 2.39432 2.58650 3.18516 3.79751 3.84396 3.95585 4.05072 4.31292 4.37494 4.45476 4.62073 4.77102 4.82778 4.87247 4.93333 4.97044 5.02121 5.11596 5.19287 5.24744 5.26256 5.34541 5.43999 5.48682 5.55543 5.67792 5.89463 6.13188 6.26971 6.81595 7.15085 7.44385 7.76284 8.95176 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.034641 B = 0.009793 C = 0.009149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.098996 B = 2858.558016 C = 3059.556073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.255 3.745 3 H 0.052 0.948 4 C -0.499 4.499 5 H 0.033 0.967 6 C 0.011 3.989 7 N -0.920 5.920 8 Si 0.950 3.050 9 H -0.268 1.268 10 H -0.277 1.277 11 H -0.289 1.289 12 N -0.590 5.590 13 C 0.494 3.506 14 O -0.595 6.595 15 C -0.134 4.134 16 C -0.111 4.111 17 C -0.112 4.112 18 C -0.134 4.134 19 C 0.135 3.865 20 H 0.072 0.928 21 C -0.153 4.153 22 H 0.062 0.938 23 H 0.027 0.973 24 H 0.020 0.980 25 H 0.261 0.739 26 H 0.083 0.917 27 H 0.106 0.894 28 H 0.047 0.953 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.102 0.898 33 H 0.062 0.938 34 H 0.043 0.957 35 H 0.097 0.903 36 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.036 -1.068 -14.898 16.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.153 3.847 3 H 0.069 0.931 4 C -0.538 4.538 5 H 0.051 0.949 6 C -0.187 4.187 7 N -0.560 5.560 8 Si 0.776 3.224 9 H -0.193 1.193 10 H -0.202 1.202 11 H -0.215 1.215 12 N -0.321 5.321 13 C 0.282 3.718 14 O -0.476 6.476 15 C -0.174 4.174 16 C -0.149 4.149 17 C -0.150 4.150 18 C -0.171 4.171 19 C 0.032 3.968 20 H 0.090 0.910 21 C -0.211 4.211 22 H 0.081 0.919 23 H 0.046 0.954 24 H 0.039 0.961 25 H 0.070 0.930 26 H 0.102 0.898 27 H 0.124 0.876 28 H 0.066 0.934 29 H 0.114 0.886 30 H 0.099 0.901 31 H 0.109 0.891 32 H 0.120 0.880 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.116 0.884 36 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.626 -1.201 -14.368 15.868 hybrid contribution -0.208 -0.413 1.473 1.544 sum 6.417 -1.614 -12.895 14.494 Atomic orbital electron populations 1.21952 0.99417 0.99387 0.99225 1.18772 0.90675 0.93107 0.82142 0.93087 1.21333 1.29853 1.10820 0.91752 0.94877 1.25514 0.95891 0.96000 1.01303 1.69956 1.38091 1.24113 1.23886 0.85745 0.78917 0.78231 0.79486 1.19293 1.20192 1.21525 1.47763 1.53824 1.08395 1.22128 1.20608 0.81107 0.82886 0.87160 1.90666 1.40216 1.72927 1.43826 1.21926 1.03396 0.98277 0.93774 1.21547 0.99019 0.99965 0.94366 1.21691 0.97119 0.99575 0.96584 1.22275 0.97920 0.99773 0.97167 1.21240 0.93656 0.91854 0.90034 0.91013 1.22169 1.00513 0.97404 1.00983 0.91888 0.95364 0.96126 0.92981 0.89804 0.87568 0.93441 0.88603 0.90063 0.89145 0.88011 0.91985 0.93764 0.88392 0.93574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.68 8.93 71.98 0.64 -7.04 16 2 C 0.26 13.38 2.14 44.25 0.09 13.48 16 3 H 0.05 2.71 5.03 -2.38 -0.01 2.70 16 4 C -0.50 -29.51 7.26 25.60 0.19 -29.32 16 5 H 0.03 2.05 7.08 -2.91 -0.02 2.03 16 6 C 0.01 0.62 5.30 84.65 0.45 1.07 16 7 N -0.92 -54.91 11.32 21.45 0.24 -54.67 16 8 Si 0.95 47.36 29.54 68.60 2.03 49.38 16 9 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 10 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 11 H -0.29 -14.85 7.11 99.48 0.71 -14.14 16 12 N -0.59 -25.20 2.70 -783.01 -2.12 -27.32 16 13 C 0.49 21.75 5.90 87.75 0.52 22.27 16 14 O -0.59 -33.07 13.21 -3.01 -0.04 -33.11 16 15 C -0.13 -4.07 5.37 29.73 0.16 -3.91 16 16 C -0.11 -2.49 5.74 30.56 0.18 -2.31 16 17 C -0.11 -1.94 5.71 30.58 0.17 -1.77 16 18 C -0.13 -3.00 5.12 30.72 0.16 -2.84 16 19 C 0.13 4.16 2.96 45.14 0.13 4.30 16 20 H 0.07 2.04 7.76 -2.39 -0.02 2.02 16 21 C -0.15 -4.72 7.91 71.98 0.57 -4.15 16 22 H 0.06 3.70 6.07 -2.39 -0.01 3.68 16 23 H 0.03 1.63 6.09 -2.39 -0.01 1.61 16 24 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.26 14.86 8.31 -92.70 -0.77 14.09 16 26 H 0.08 2.53 8.09 -2.39 -0.02 2.51 16 27 H 0.11 2.84 5.90 -2.39 -0.01 2.83 16 28 H 0.05 1.25 7.83 -2.39 -0.02 1.23 16 29 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 30 H 0.08 1.19 8.09 -2.39 -0.02 1.17 16 31 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.10 1.74 7.63 -2.39 -0.02 1.72 16 33 H 0.06 1.61 5.54 -2.39 -0.01 1.60 16 34 H 0.04 1.59 8.06 -2.39 -0.02 1.57 16 35 H 0.10 2.13 7.85 -2.38 -0.02 2.12 16 36 H 0.05 1.60 6.57 -2.39 -0.02 1.58 16 Total: -1.00 -72.86 270.76 4.43 -68.43 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: 1.06 Total: 7.53 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: 3.26 Total: -10.24 kcal Atomic # 7 Polarization: -80.11 SS G_CDS: -1.87 Total: -81.98 kcal Atomic # 8 Polarization: -33.07 SS G_CDS: -0.04 Total: -33.11 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 2.03 Total: 49.38 kcal Total: -72.86 4.43 -68.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261038572.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.798 kcal (2) G-P(sol) polarization free energy of solvation -72.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds