Wall clock time and date at job start Mon Mar 30 2020 03:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47522 * 2 1 4 4 C 1.50707 * 109.47126 * 239.99461 * 2 1 3 5 5 H 1.07999 * 119.99679 * 240.00200 * 4 2 1 6 6 C 1.37870 * 119.99610 * 60.00583 * 4 2 1 7 7 N 1.31510 * 120.00508 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 119.99769 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46778 * 269.99953 * 8 6 4 10 10 H 1.48490 * 109.47030 * 29.99816 * 8 6 4 11 11 H 1.48496 * 109.46822 * 149.99872 * 8 6 4 12 12 N 1.46503 * 109.46599 * 120.00109 * 2 1 3 13 13 C 1.34780 * 119.99847 * 274.99561 * 12 2 1 14 14 O 1.21279 * 119.99871 * 0.02562 * 13 12 2 15 15 C 1.50701 * 120.00080 * 180.02562 * 13 12 2 16 16 H 1.09005 * 110.01118 * 27.14619 * 15 13 12 17 17 C 1.54268 * 110.03036 * 148.53302 * 15 13 12 18 18 C 1.54886 * 104.19588 * 142.89845 * 17 15 13 19 19 C 1.54890 * 102.74752 * 322.05627 * 18 17 15 20 20 C 1.53866 * 110.03315 * 265.70237 * 15 13 12 21 21 H 1.09002 * 110.03613 * 121.43142 * 20 15 13 22 22 C 1.52999 * 110.03516 * 359.97438 * 20 15 13 23 23 H 1.08990 * 109.47344 * 300.00506 * 1 2 3 24 24 H 1.09005 * 109.46529 * 60.00434 * 1 2 3 25 25 H 1.09000 * 109.47109 * 179.97438 * 1 2 3 26 26 H 0.96999 * 120.00633 * 179.97438 * 7 6 4 27 27 H 0.96997 * 120.00384 * 95.00105 * 12 2 1 28 28 H 1.09003 * 110.48776 * 261.57580 * 17 15 13 29 29 H 1.08994 * 110.48424 * 24.21557 * 17 15 13 30 30 H 1.09001 * 110.76003 * 80.36962 * 18 17 15 31 31 H 1.08997 * 110.75997 * 203.56092 * 18 17 15 32 32 H 1.08999 * 110.48860 * 156.62043 * 19 18 17 33 33 H 1.08997 * 110.48920 * 279.13668 * 19 18 17 34 34 H 1.09003 * 109.46800 * 58.59445 * 22 20 15 35 35 H 1.08998 * 109.47086 * 178.59089 * 22 20 15 36 36 H 1.08993 * 109.47480 * 298.59737 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 -1.2305 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9429 0.8295 -2.6034 8 14 2.3226 -1.1198 -4.0079 9 1 3.6306 -0.5443 -4.4117 10 1 2.4880 -2.5655 -3.7121 11 1 1.3446 -0.9492 -5.1122 12 7 2.0182 -0.6907 1.1962 13 6 2.1469 -0.0183 2.3572 14 8 1.8582 1.1584 2.4117 15 6 2.6497 -0.7285 3.5876 16 1 3.2880 -1.5644 3.3011 17 6 3.4347 0.2539 4.4811 18 6 3.0666 -0.1688 5.9250 19 6 1.5681 -0.5405 5.8008 20 6 1.4629 -1.2336 4.4266 21 1 1.5249 -2.3150 4.5481 22 6 0.1439 -0.8561 3.7493 23 1 -0.3633 0.5139 0.8898 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7089 1.1611 -3.4844 27 1 2.2489 -1.6318 1.1527 28 1 4.5067 0.1482 4.3143 29 1 3.1174 1.2792 4.2911 30 1 3.6542 -1.0324 6.2365 31 1 3.2054 0.6612 6.6178 32 1 1.2778 -1.2259 6.5970 33 1 0.9492 0.3564 5.8262 34 1 0.1121 -1.2887 2.7494 35 1 -0.6895 -1.2396 4.3379 36 1 0.0695 0.2290 3.6782 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300215133.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:21 Heat of formation + Delta-G solvation = -66.551794 kcal Electronic energy + Delta-G solvation = -16202.540335 eV Core-core repulsion = 13685.396705 eV Total energy + Delta-G solvation = -2517.143631 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.79622 -36.96179 -34.64894 -32.35103 -31.04375 -29.67562 -28.05161 -25.23836 -24.86684 -22.07320 -20.53161 -19.86839 -18.76903 -16.78683 -16.24656 -15.39342 -15.15259 -14.58825 -14.07053 -13.72984 -13.43581 -13.00358 -12.40186 -12.28013 -11.97508 -11.56699 -11.46134 -11.01074 -11.00201 -10.91359 -10.76750 -10.62519 -10.60281 -10.49166 -10.28828 -10.25278 -10.19766 -9.02101 -8.82039 -8.51105 -7.82049 -6.09998 -4.19164 3.25572 3.32069 3.33984 3.49254 4.16755 4.41297 4.66915 4.76283 4.97474 5.22117 5.41719 5.49881 5.57668 5.69580 5.71375 5.76541 5.77712 5.97404 6.03193 6.19100 6.21293 6.32839 6.42418 6.55613 6.64713 6.86474 7.01012 7.19577 7.52820 7.61672 7.73681 7.96143 8.18793 8.74732 8.83013 9.22832 9.49135 10.95906 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.051404 B = 0.006455 C = 0.006265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.574596 B = 4336.351830 C = 4468.547570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.264 3.736 3 H 0.047 0.953 4 C -0.533 4.533 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.285 1.285 12 N -0.712 5.712 13 C 0.514 3.486 14 O -0.557 6.557 15 C -0.114 4.114 16 H 0.083 0.917 17 C -0.113 4.113 18 C -0.123 4.123 19 C -0.118 4.118 20 C -0.078 4.078 21 H 0.073 0.927 22 C -0.159 4.159 23 H 0.015 0.985 24 H 0.088 0.912 25 H 0.025 0.975 26 H 0.264 0.736 27 H 0.387 0.613 28 H 0.063 0.937 29 H 0.086 0.914 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.050 0.950 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.023 -5.263 13.029 14.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.162 3.838 3 H 0.065 0.935 4 C -0.571 4.571 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.728 3.272 9 H -0.206 1.206 10 H -0.199 1.199 11 H -0.211 1.211 12 N -0.359 5.359 13 C 0.300 3.700 14 O -0.436 6.436 15 C -0.136 4.136 16 H 0.101 0.899 17 C -0.150 4.150 18 C -0.160 4.160 19 C -0.156 4.156 20 C -0.097 4.097 21 H 0.091 0.909 22 C -0.216 4.216 23 H 0.034 0.966 24 H 0.107 0.893 25 H 0.044 0.956 26 H 0.074 0.926 27 H 0.219 0.781 28 H 0.082 0.918 29 H 0.104 0.896 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.712 -4.293 12.868 13.673 hybrid contribution 0.412 -1.012 -1.006 1.485 sum 2.125 -5.305 11.863 13.167 Atomic orbital electron populations 1.22065 0.98573 0.98959 1.00826 1.18704 0.90960 0.93928 0.80191 0.93532 1.21241 1.32297 1.13155 0.90432 0.92161 1.24889 0.94829 0.94980 0.99042 1.69903 1.35917 1.22539 1.23807 0.86459 0.78601 0.79839 0.82260 1.20580 1.19878 1.21086 1.46592 1.65255 1.13400 1.10622 1.20203 0.78078 0.87334 0.84416 1.90615 1.51738 1.16285 1.84989 1.22064 0.97770 0.98988 0.94801 0.89909 1.22339 0.98900 1.00452 0.93352 1.22465 0.96114 1.00595 0.96838 1.22446 0.96709 1.00332 0.96101 1.21595 0.94296 0.99447 0.94325 0.90853 1.22096 0.95792 1.03054 1.00707 0.96618 0.89307 0.95598 0.92621 0.78101 0.91822 0.89592 0.91817 0.91656 0.91959 0.91267 0.91728 0.93087 0.91327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 9.26 37.16 0.34 -3.31 16 2 C 0.26 6.81 2.56 -69.08 -0.18 6.63 16 3 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 4 C -0.53 -14.30 8.73 -34.44 -0.30 -14.60 16 5 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -25.20 11.32 55.43 0.63 -24.57 16 8 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 10 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 11 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 12 N -0.71 -15.03 4.63 -54.93 -0.25 -15.28 16 13 C 0.51 10.33 4.67 -10.98 -0.05 10.28 16 14 O -0.56 -13.34 14.55 5.56 0.08 -13.26 16 15 C -0.11 -1.73 3.29 -90.66 -0.30 -2.02 16 16 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 17 C -0.11 -1.58 6.31 -25.07 -0.16 -1.73 16 18 C -0.12 -1.37 6.91 -24.74 -0.17 -1.54 16 19 C -0.12 -1.39 6.36 -25.07 -0.16 -1.55 16 20 C -0.08 -1.03 3.50 -89.50 -0.31 -1.35 16 21 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 22 C -0.16 -2.44 7.91 37.16 0.29 -2.15 16 23 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 24 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 25 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 27 H 0.39 7.17 8.54 -40.82 -0.35 6.83 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.09 1.42 6.90 -51.93 -0.36 1.06 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.87 7.82 -51.93 -0.41 0.47 16 34 H 0.06 1.09 7.10 -51.93 -0.37 0.72 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.07 1.23 6.93 -51.93 -0.36 0.87 16 LS Contribution 286.41 15.07 4.32 4.32 Total: -1.00 -29.94 286.41 -7.23 -37.17 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -5.90 Total: 5.48 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: -1.09 Total: -9.65 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 0.37 Total: -39.85 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: 0.08 Total: -13.26 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.94 -7.23 -37.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300215133.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.380 kcal (2) G-P(sol) polarization free energy of solvation -29.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds