Wall clock time and date at job start Mon Mar 30 2020 03:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50698 * 119.99822 * 2 1 4 4 O 1.42898 * 109.46985 * 135.00442 * 3 2 1 5 5 C 1.42898 * 114.00148 * 180.02562 * 4 3 2 6 6 C 1.52995 * 109.47285 * 179.97438 * 5 4 3 7 7 N 1.46900 * 109.47016 * 65.00142 * 6 5 4 8 8 C 1.47448 * 111.00041 * 69.15688 * 7 6 5 9 9 C 1.54321 * 107.23159 * 123.26094 * 8 7 6 10 10 C 1.55422 * 103.04810 * 22.28093 * 9 8 7 11 11 H 1.08998 * 111.00401 * 82.38939 * 10 9 8 12 12 C 1.50702 * 111.10698 * 206.29460 * 10 9 8 13 13 H 1.08002 * 119.99583 * 112.17314 * 12 10 9 14 14 C 1.37874 * 120.00111 * 292.17739 * 12 10 9 15 15 N 1.31511 * 119.99903 * 359.97438 * 14 12 10 16 16 Si 1.86803 * 119.99891 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.47036 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.46987 * 119.99992 * 16 14 12 19 19 H 1.48503 * 109.46798 * 239.99732 * 16 14 12 20 20 C 1.47846 * 111.00020 * 189.99819 * 7 6 5 21 21 H 1.08003 * 120.00176 * 359.97438 * 1 2 3 22 22 H 1.08001 * 120.00047 * 180.02562 * 1 2 3 23 23 H 1.07995 * 119.99823 * 180.02562 * 2 1 3 24 24 H 1.08996 * 109.47137 * 15.00487 * 3 2 1 25 25 H 1.08997 * 109.47406 * 255.00065 * 3 2 1 26 26 H 1.09002 * 109.47310 * 59.99307 * 5 4 3 27 27 H 1.08997 * 109.47275 * 300.00052 * 5 4 3 28 28 H 1.09001 * 109.47391 * 304.99813 * 6 5 4 29 29 H 1.09001 * 109.47271 * 184.99726 * 6 5 4 30 30 H 1.08999 * 109.88737 * 242.66366 * 8 7 6 31 31 H 1.09000 * 109.88899 * 3.85249 * 8 7 6 32 32 H 1.09004 * 110.70290 * 140.66846 * 9 8 7 33 33 H 1.09004 * 110.70313 * 263.89914 * 9 8 7 34 34 H 0.97006 * 120.00009 * 180.02562 * 15 14 12 35 35 H 1.09002 * 110.37464 * 332.46590 * 20 7 6 36 36 H 1.08999 * 110.37318 * 94.69366 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 8 3.1267 1.2413 0.9526 5 6 3.9077 2.4352 1.0328 6 6 5.0099 2.2544 2.0784 7 7 5.9415 1.2099 1.6322 8 6 6.7242 1.6625 0.4675 9 6 8.2159 1.5404 0.8437 10 6 8.2038 0.4913 1.9904 11 1 8.1767 -0.5228 1.5919 12 6 9.3846 0.6770 2.9082 13 1 9.2319 1.0124 3.9234 14 6 10.6597 0.4187 2.4519 15 7 10.8456 0.0098 1.2159 16 14 12.1234 0.6495 3.5894 17 1 11.6495 1.1140 4.9178 18 1 12.8397 -0.6423 3.7427 19 1 13.0446 1.6608 3.0116 20 6 6.8787 0.8387 2.7137 21 1 -0.5400 0.9353 0.0004 22 1 -0.5400 -0.9353 0.0004 23 1 1.8499 -0.9353 -0.0004 24 1 1.3855 2.1160 0.2661 25 1 2.4755 1.4868 -0.9926 26 1 3.2677 3.2694 1.3205 27 1 4.3579 2.6409 0.0617 28 1 4.5643 1.9619 3.0292 29 1 5.5495 3.1932 2.2036 30 1 6.5061 1.0310 -0.3938 31 1 6.4830 2.7007 0.2394 32 1 8.7986 1.1784 -0.0034 33 1 8.6030 2.4953 1.1993 34 1 11.7427 -0.1723 0.8949 35 1 7.0260 1.6783 3.3931 36 1 6.5052 -0.0283 3.2586 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397579633.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:08 Heat of formation + Delta-G solvation = -46.080756 kcal Electronic energy + Delta-G solvation = -15431.566866 eV Core-core repulsion = 12915.310926 eV Total energy + Delta-G solvation = -2516.255940 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.97499 -38.66104 -35.37520 -34.61298 -32.72518 -30.00079 -29.30674 -26.72128 -26.03288 -23.63050 -21.51440 -21.21843 -20.70588 -18.50601 -17.76302 -17.16150 -16.64634 -16.44301 -16.09937 -15.74935 -14.84405 -14.36500 -14.23067 -13.94703 -13.79791 -13.34689 -13.05728 -12.99395 -12.84649 -12.68605 -12.28035 -12.02389 -11.84452 -11.71897 -11.53221 -11.12548 -10.91120 -10.71044 -10.50483 -10.16897 -9.09076 -8.14835 -6.25483 1.28918 1.40327 1.41815 1.53772 2.42002 2.94101 3.15907 3.22343 3.98280 4.08158 4.17779 4.25014 4.30757 4.38095 4.46408 4.51393 4.55011 4.65069 4.67095 4.75479 4.83414 4.93904 5.02946 5.06086 5.23687 5.31540 5.57428 5.69982 5.76475 5.78365 5.89756 6.07086 6.28996 6.36953 6.48879 6.84664 7.42519 8.95246 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.062660 B = 0.004731 C = 0.004696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.746322 B = 5916.617746 C = 5960.763426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.174 4.174 3 C 0.083 3.917 4 O -0.395 6.395 5 C 0.073 3.927 6 C 0.049 3.951 7 N -0.534 5.534 8 C 0.052 3.948 9 C -0.112 4.112 10 C 0.037 3.963 11 H 0.002 0.998 12 C -0.532 4.532 13 H 0.056 0.944 14 C 0.012 3.988 15 N -0.920 5.920 16 Si 0.959 3.041 17 H -0.265 1.265 18 H -0.280 1.280 19 H -0.279 1.279 20 C 0.060 3.940 21 H 0.112 0.888 22 H 0.115 0.885 23 H 0.103 0.897 24 H 0.068 0.932 25 H 0.058 0.942 26 H 0.076 0.924 27 H 0.050 0.950 28 H 0.078 0.922 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.043 0.957 33 H 0.039 0.961 34 H 0.261 0.739 35 H 0.038 0.962 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.562 5.723 -2.168 17.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.192 4.192 3 C 0.007 3.993 4 O -0.315 6.315 5 C -0.004 4.004 6 C -0.079 4.079 7 N -0.258 5.258 8 C -0.076 4.076 9 C -0.152 4.152 10 C 0.018 3.982 11 H 0.021 0.979 12 C -0.570 4.570 13 H 0.074 0.926 14 C -0.187 4.187 15 N -0.559 5.559 16 Si 0.784 3.216 17 H -0.189 1.189 18 H -0.206 1.206 19 H -0.205 1.205 20 C -0.067 4.067 21 H 0.130 0.870 22 H 0.133 0.867 23 H 0.121 0.879 24 H 0.086 0.914 25 H 0.076 0.924 26 H 0.094 0.906 27 H 0.068 0.932 28 H 0.096 0.904 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.056 0.944 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -16.715 5.094 -2.313 17.627 hybrid contribution 1.607 0.668 0.370 1.779 sum -15.108 5.761 -1.944 16.286 Atomic orbital electron populations 1.24019 0.94808 1.03408 0.98283 1.22809 0.96400 0.98012 1.01966 1.21647 0.88850 0.96286 0.92503 1.88014 1.44904 1.37968 1.60634 1.22572 0.92081 0.87208 0.98526 1.22353 0.93288 0.93608 0.98685 1.63562 1.17635 1.38567 1.06082 1.22776 0.92315 0.98649 0.93860 1.22577 0.94413 0.98769 0.99397 1.19742 0.91641 0.93745 0.93047 0.97937 1.21419 0.92014 1.45367 0.98217 0.92588 1.25804 1.01745 0.94598 0.96537 1.70107 1.22356 1.46419 1.17016 0.85497 0.79102 0.77745 0.79260 1.18924 1.20619 1.20528 1.22914 0.92058 0.98659 0.93107 0.87016 0.86676 0.87928 0.91425 0.92398 0.90626 0.93213 0.90390 0.92494 0.92073 0.91925 0.93809 0.94212 0.92990 0.94407 0.92273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.68 14.31 67.78 0.97 -1.71 16 2 C -0.17 -3.72 9.89 25.65 0.25 -3.46 16 3 C 0.08 1.84 6.35 71.24 0.45 2.29 16 4 O -0.40 -11.64 10.27 -148.98 -1.53 -13.17 16 5 C 0.07 1.86 6.03 71.98 0.43 2.29 16 6 C 0.05 1.49 4.92 86.30 0.42 1.91 16 7 N -0.53 -20.80 5.11 -885.52 -4.53 -25.33 16 8 C 0.05 2.01 6.13 86.65 0.53 2.55 16 9 C -0.11 -5.41 5.91 31.88 0.19 -5.22 16 10 C 0.04 1.97 2.85 -10.05 -0.03 1.94 16 11 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 12 C -0.53 -29.98 8.50 25.60 0.22 -29.76 16 13 H 0.06 3.08 7.77 -2.91 -0.02 3.06 16 14 C 0.01 0.68 5.38 84.65 0.46 1.14 16 15 N -0.92 -54.57 12.63 21.45 0.27 -54.30 16 16 Si 0.96 44.05 29.54 68.60 2.03 46.08 16 17 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 18 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 19 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 20 C 0.06 2.65 6.12 86.77 0.53 3.18 16 21 H 0.11 1.40 7.90 -2.91 -0.02 1.38 16 22 H 0.12 1.51 8.06 -2.91 -0.02 1.48 16 23 H 0.10 2.45 8.06 -2.91 -0.02 2.42 16 24 H 0.07 1.19 7.86 -2.39 -0.02 1.17 16 25 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.05 1.25 7.00 -2.39 -0.02 1.23 16 28 H 0.08 2.34 8.08 -2.39 -0.02 2.32 16 29 H 0.06 1.62 7.98 -2.39 -0.02 1.60 16 30 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.06 2.08 6.91 -2.39 -0.02 2.06 16 32 H 0.04 2.28 7.85 -2.38 -0.02 2.26 16 33 H 0.04 1.92 8.04 -2.38 -0.02 1.90 16 34 H 0.26 14.64 8.31 -92.70 -0.77 13.87 16 35 H 0.04 1.62 7.68 -2.39 -0.02 1.60 16 36 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 Total: -1.00 -63.99 297.47 1.68 -62.30 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: 1.01 Total: 9.28 kcal Atomic # 6 Polarization: -29.29 SS G_CDS: 4.43 Total: -24.86 kcal Atomic # 7 Polarization: -75.37 SS G_CDS: -4.26 Total: -79.63 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: -1.53 Total: -13.17 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -63.99 1.68 -62.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397579633.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.223 kcal (2) G-P(sol) polarization free energy of solvation -63.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds