Wall clock time and date at job start Mon Mar 30 2020 03:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47511 * 2 1 4 4 H 1.09004 * 109.46651 * 54.42147 * 3 2 1 5 5 C 1.50699 * 109.47209 * 174.42377 * 3 2 1 6 6 H 1.07996 * 119.99865 * 114.19891 * 5 3 2 7 7 C 1.37877 * 119.99961 * 294.19749 * 5 3 2 8 8 N 1.31513 * 119.99936 * 159.34867 * 7 5 3 9 9 Si 1.86803 * 120.00145 * 339.34721 * 7 5 3 10 10 H 1.48508 * 109.46924 * 270.00013 * 9 7 5 11 11 H 1.48495 * 109.47244 * 29.99875 * 9 7 5 12 12 H 1.48500 * 109.47266 * 150.00139 * 9 7 5 13 13 N 1.46499 * 109.47065 * 294.42726 * 3 2 1 14 14 C 1.34775 * 120.00282 * 84.99902 * 13 3 2 15 15 O 1.21285 * 120.00085 * 359.97438 * 14 13 3 16 16 C 1.50695 * 120.00356 * 180.02562 * 14 13 3 17 17 C 1.53777 * 113.61283 * 277.49884 * 16 14 13 18 18 C 1.53781 * 87.08023 * 220.01501 * 17 16 14 19 19 C 1.53005 * 113.61799 * 139.97875 * 18 17 16 20 20 C 1.53776 * 113.62010 * 179.97438 * 16 14 13 21 21 H 1.09003 * 109.47087 * 300.00556 * 1 2 3 22 22 H 1.09005 * 109.47057 * 59.99608 * 1 2 3 23 23 H 1.08989 * 109.47183 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47669 * 240.00169 * 2 1 3 25 25 H 1.08996 * 109.47208 * 119.99805 * 2 1 3 26 26 H 0.97000 * 120.00114 * 354.93313 * 8 7 5 27 27 H 0.96997 * 119.99566 * 264.99631 * 13 3 2 28 28 H 1.09004 * 112.85086 * 48.79599 * 16 14 13 29 29 H 1.09002 * 113.61442 * 334.56023 * 17 16 14 30 30 H 1.09002 * 113.62099 * 105.47090 * 17 16 14 31 31 H 1.09000 * 113.61418 * 270.87886 * 18 17 16 32 32 H 1.09003 * 109.46898 * 322.50765 * 19 18 17 33 33 H 1.08996 * 109.47007 * 82.50118 * 19 18 17 34 34 H 1.08998 * 109.47455 * 202.50322 * 19 18 17 35 35 H 1.08997 * 113.61995 * 254.53290 * 20 16 14 36 36 H 1.09005 * 113.61205 * 25.43341 * 20 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5974 1.9844 0.8359 5 6 3.5407 1.4447 0.1381 6 1 4.1572 1.8010 -0.6740 7 6 4.1267 0.9918 1.3011 8 7 5.3846 0.6081 1.2974 9 14 3.1338 0.9231 2.8819 10 1 3.2701 2.2113 3.6083 11 1 1.7040 0.6860 2.5586 12 1 3.6382 -0.1823 3.7356 13 7 1.6644 2.0933 -1.2576 14 6 0.4483 2.6599 -1.3861 15 8 -0.3353 2.6306 -0.4609 16 6 0.0616 3.3288 -2.6799 17 6 0.5818 4.7703 -2.8075 18 6 -0.7757 5.1207 -3.4394 19 6 -1.3322 6.4721 -2.9865 20 6 -1.3560 3.9246 -2.6658 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 5.8788 0.5739 0.4635 27 1 2.2909 2.1165 -1.9977 28 1 0.2663 2.7105 -3.5539 29 1 0.7559 5.2582 -1.8485 30 1 1.4222 4.8722 -3.4941 31 1 -0.7994 4.9934 -4.5217 32 1 -1.1022 6.6247 -1.9320 33 1 -0.8778 7.2682 -3.5763 34 1 -2.4128 6.4862 -3.1284 35 1 -2.0795 3.3438 -3.2379 36 1 -1.7119 4.1812 -1.6680 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613037766.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:52 Heat of formation + Delta-G solvation = -40.503382 kcal Electronic energy + Delta-G solvation = -16059.490917 eV Core-core repulsion = 13543.476831 eV Total energy + Delta-G solvation = -2516.014087 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.97060 -37.70575 -35.07101 -32.40276 -31.46626 -29.87606 -27.25743 -25.56043 -24.15733 -22.26506 -20.38553 -19.46454 -19.20591 -17.73674 -16.35103 -15.50041 -15.46956 -14.58051 -13.94250 -13.47399 -13.33074 -13.09428 -12.64924 -12.37413 -12.34550 -12.25830 -11.96836 -11.64249 -11.11789 -10.86807 -10.74317 -10.65537 -10.48152 -10.33178 -10.15743 -9.85026 -9.68787 -9.08683 -8.94877 -8.30016 -8.00011 -6.57170 -4.19470 3.31046 3.42111 3.46295 3.62079 4.08838 4.45333 4.55660 4.67754 4.87720 4.89758 5.14783 5.36241 5.46358 5.66487 5.71294 5.74377 5.82581 5.91602 6.05224 6.09447 6.10488 6.12351 6.29889 6.31959 6.56370 6.73857 6.82245 7.01214 7.08794 7.40359 7.49017 7.72004 8.26133 8.57380 8.74071 9.08288 9.47604 10.81181 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.037930 B = 0.007182 C = 0.006800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.022337 B = 3897.497762 C = 4116.468972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.128 4.128 3 C 0.247 3.753 4 H 0.042 0.958 5 C -0.621 4.621 6 H 0.061 0.939 7 C 0.044 3.956 8 N -0.895 5.895 9 Si 1.034 2.966 10 H -0.284 1.284 11 H -0.268 1.268 12 H -0.284 1.284 13 N -0.702 5.702 14 C 0.510 3.490 15 O -0.553 6.553 16 C -0.141 4.141 17 C -0.118 4.118 18 C -0.117 4.117 19 C -0.141 4.141 20 C -0.112 4.112 21 H 0.051 0.949 22 H 0.049 0.951 23 H 0.029 0.971 24 H 0.048 0.952 25 H 0.059 0.941 26 H 0.270 0.730 27 H 0.391 0.609 28 H 0.104 0.896 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.582 6.267 -9.172 15.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.167 4.167 3 C 0.143 3.857 4 H 0.060 0.940 5 C -0.659 4.659 6 H 0.079 0.921 7 C -0.163 4.163 8 N -0.527 5.527 9 Si 0.861 3.139 10 H -0.210 1.210 11 H -0.193 1.193 12 H -0.210 1.210 13 N -0.349 5.349 14 C 0.295 3.705 15 O -0.432 6.432 16 C -0.162 4.162 17 C -0.156 4.156 18 C -0.136 4.136 19 C -0.198 4.198 20 C -0.149 4.149 21 H 0.070 0.930 22 H 0.068 0.932 23 H 0.048 0.952 24 H 0.067 0.933 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.224 0.776 28 H 0.122 0.878 29 H 0.104 0.896 30 H 0.089 0.911 31 H 0.106 0.894 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.990 5.878 -6.868 14.231 hybrid contribution 0.418 0.238 -2.101 2.156 sum -10.572 6.116 -8.969 15.153 Atomic orbital electron populations 1.21886 0.97395 0.98736 1.02042 1.22196 0.93737 0.99811 1.00972 1.19087 0.95661 0.88504 0.82457 0.94003 1.22061 0.89839 1.49268 1.04688 0.92075 1.25636 0.96855 0.92007 1.01830 1.70831 1.10551 1.40325 1.31026 0.84185 0.76449 0.77369 0.75917 1.21028 1.19323 1.20993 1.46277 1.14780 1.55827 1.17981 1.20285 0.82449 0.78682 0.89057 1.90633 1.51105 1.60031 1.41423 1.22727 0.99275 0.96873 0.97336 1.22919 0.97008 0.94091 1.01569 1.22492 0.96458 0.95150 0.99458 1.21710 1.00600 0.96138 1.01387 1.22869 0.94675 0.95834 1.01567 0.92980 0.93237 0.95216 0.93275 0.92277 0.91994 0.77622 0.87760 0.89583 0.91073 0.89402 0.92412 0.92855 0.92640 0.91592 0.88671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.53 37.16 0.32 -2.66 16 2 C -0.13 -2.92 5.03 -26.73 -0.13 -3.05 16 3 C 0.25 5.96 1.78 -69.08 -0.12 5.83 16 4 H 0.04 1.11 5.99 -51.93 -0.31 0.80 16 5 C -0.62 -16.87 8.97 -34.44 -0.31 -17.18 16 6 H 0.06 1.74 7.96 -52.49 -0.42 1.32 16 7 C 0.04 1.24 5.25 -17.82 -0.09 1.14 16 8 N -0.89 -26.71 13.70 55.43 0.76 -25.95 16 9 Si 1.03 25.28 26.33 -169.99 -4.48 20.81 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.27 -6.28 5.88 56.52 0.33 -5.94 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 N -0.70 -14.29 5.03 -54.93 -0.28 -14.57 16 14 C 0.51 9.70 5.95 -10.99 -0.07 9.63 16 15 O -0.55 -12.26 13.04 5.55 0.07 -12.18 16 16 C -0.14 -1.98 4.15 -90.97 -0.38 -2.36 16 17 C -0.12 -1.47 7.18 -25.92 -0.19 -1.66 16 18 C -0.12 -1.26 4.36 -89.79 -0.39 -1.65 16 19 C -0.14 -1.38 9.71 37.16 0.36 -1.02 16 20 C -0.11 -1.44 6.97 -25.91 -0.18 -1.62 16 21 H 0.05 1.14 7.88 -51.93 -0.41 0.73 16 22 H 0.05 1.02 5.63 -51.93 -0.29 0.72 16 23 H 0.03 0.54 8.14 -51.94 -0.42 0.11 16 24 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.06 1.39 5.64 -51.93 -0.29 1.10 16 26 H 0.27 7.96 8.73 -40.82 -0.36 7.61 16 27 H 0.39 7.19 8.53 -40.82 -0.35 6.84 16 28 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.09 1.20 7.91 -51.93 -0.41 0.79 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.61 7.94 -51.93 -0.41 0.20 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.09 1.41 7.39 -51.93 -0.38 1.02 16 LS Contribution 284.81 15.07 4.29 4.29 Total: -1.00 -30.33 284.81 -6.69 -37.03 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -5.88 Total: 5.17 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: -1.18 Total: -14.59 kcal Atomic # 7 Polarization: -41.00 SS G_CDS: 0.48 Total: -40.52 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: 0.07 Total: -12.18 kcal Atomic # 14 Polarization: 25.28 SS G_CDS: -4.48 Total: 20.81 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -30.33 -6.69 -37.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613037766.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.475 kcal (2) G-P(sol) polarization free energy of solvation -30.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds