Wall clock time and date at job start Mon Mar 30 2020 02:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53008 * 109.46851 * 2 1 4 4 H 1.08996 * 110.28831 * 53.40620 * 3 2 1 5 5 C 1.54476 * 110.24380 * 291.42908 * 3 2 1 6 6 C 1.54786 * 101.69066 * 215.38982 * 5 3 2 7 7 H 1.08997 * 110.61998 * 266.39713 * 6 5 3 8 8 C 1.53005 * 110.42867 * 143.70970 * 6 5 3 9 9 C 1.51277 * 104.12086 * 25.10414 * 6 5 3 10 10 O 1.21282 * 124.94280 * 163.67180 * 9 6 5 11 11 N 1.34421 * 110.11694 * 343.40745 * 9 6 5 12 12 C 1.46497 * 124.34934 * 179.84390 * 11 9 6 13 13 C 1.53004 * 109.47090 * 89.90081 * 12 11 9 14 14 C 1.50697 * 109.47185 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99807 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00083 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00278 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00034 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47347 * 90.00065 * 18 16 14 20 20 H 1.48502 * 109.46928 * 210.00025 * 18 16 14 21 21 H 1.48497 * 109.47240 * 329.99519 * 18 16 14 22 22 H 1.09004 * 109.47023 * 185.88458 * 1 2 3 23 23 H 1.08999 * 109.47144 * 305.88006 * 1 2 3 24 24 H 1.09000 * 109.47746 * 65.88242 * 1 2 3 25 25 H 1.09000 * 109.47255 * 240.00322 * 2 1 3 26 26 H 1.09002 * 109.47477 * 119.99752 * 2 1 3 27 27 H 1.08996 * 110.97230 * 333.70007 * 5 3 2 28 28 H 1.09003 * 110.96954 * 97.43267 * 5 3 2 29 29 H 1.08997 * 109.47039 * 303.89917 * 8 6 5 30 30 H 1.09006 * 109.46987 * 63.89533 * 8 6 5 31 31 H 1.08999 * 109.47204 * 183.89860 * 8 6 5 32 32 H 1.09003 * 109.46725 * 209.89393 * 12 11 9 33 33 H 1.08995 * 109.47401 * 329.89501 * 12 11 9 34 34 H 1.09008 * 109.46523 * 299.99646 * 13 12 11 35 35 H 1.08995 * 109.47472 * 59.99464 * 13 12 11 36 36 H 0.96998 * 120.00756 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5913 2.0021 0.8208 5 6 1.7188 2.1230 -1.3491 6 6 2.9577 3.0298 -1.5458 7 1 2.7669 4.0300 -1.1569 8 6 3.3434 3.0938 -3.0250 9 6 4.0448 2.3484 -0.7442 10 8 5.2319 2.5715 -0.8536 11 7 3.5032 1.4639 0.1109 12 6 4.2745 0.6290 1.0351 13 6 4.4533 1.3686 2.3625 14 6 5.2472 0.5100 3.3130 15 1 5.5896 -0.4658 3.0016 16 6 5.5364 0.9702 4.5800 17 7 5.1199 2.1586 4.9591 18 14 6.5199 -0.0945 5.7585 19 1 7.9677 0.1917 5.5935 20 1 6.1121 0.2056 7.1545 21 1 6.2618 -1.5270 5.4645 22 1 -0.3633 -1.0223 0.1054 23 1 -0.3633 0.6023 0.8327 24 1 -0.3634 0.4199 -0.9379 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6394 1.3863 -2.1485 28 1 0.8088 2.7189 -1.2787 29 1 3.5099 2.0844 -3.4010 30 1 2.5386 3.5638 -3.5903 31 1 4.2562 3.6786 -3.1376 32 1 3.7430 -0.3066 1.2092 33 1 5.2523 0.4164 0.6030 34 1 4.9848 2.3043 2.1883 35 1 3.4755 1.5812 2.7946 36 1 5.3237 2.4825 5.8503 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685973243.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:44 Heat of formation + Delta-G solvation = -59.939056 kcal Electronic energy + Delta-G solvation = -15972.779416 eV Core-core repulsion = 13455.922535 eV Total energy + Delta-G solvation = -2516.856881 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.26217 -36.50178 -34.37993 -33.11026 -32.49165 -29.84860 -27.60941 -25.50773 -24.50576 -22.44021 -21.37414 -20.28462 -18.43154 -16.88645 -16.25139 -15.45650 -14.84990 -14.66600 -14.42339 -13.75950 -13.41066 -13.25856 -12.79002 -12.46538 -12.36360 -12.14932 -12.05060 -11.73197 -11.33454 -11.25973 -11.09386 -10.92515 -10.84046 -10.64255 -10.38030 -9.93256 -9.81589 -9.29303 -9.02671 -8.35615 -7.95779 -6.00755 -4.04248 3.14118 3.32795 3.38394 3.40978 3.59876 4.46638 4.52326 4.58587 4.74633 5.12297 5.21731 5.26690 5.35322 5.36682 5.48986 5.58088 5.69003 5.74483 5.89071 5.94648 6.00962 6.06100 6.13063 6.21701 6.26451 6.34925 6.54123 6.85779 7.08152 7.57438 7.70227 7.91033 7.99711 8.36008 8.76779 9.02796 9.59726 11.10728 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.030525 B = 0.007080 C = 0.006176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.074485 B = 3953.827853 C = 4532.636901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.133 4.133 3 C 0.130 3.870 4 H 0.079 0.921 5 C -0.122 4.122 6 C -0.130 4.130 7 H 0.104 0.896 8 C -0.130 4.130 9 C 0.514 3.486 10 O -0.535 6.535 11 N -0.607 5.607 12 C 0.126 3.874 13 C 0.012 3.988 14 C -0.522 4.522 15 H 0.057 0.943 16 C 0.059 3.941 17 N -0.893 5.893 18 Si 0.895 3.105 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.273 1.273 22 H 0.055 0.945 23 H 0.057 0.943 24 H 0.054 0.946 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.020 0.980 35 H 0.017 0.983 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.833 -1.462 -12.636 16.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.171 4.171 3 C 0.026 3.974 4 H 0.097 0.903 5 C -0.160 4.160 6 C -0.151 4.151 7 H 0.122 0.878 8 C -0.188 4.188 9 C 0.300 3.700 10 O -0.412 6.412 11 N -0.339 5.339 12 C 0.006 3.994 13 C -0.026 4.026 14 C -0.560 4.560 15 H 0.075 0.925 16 C -0.143 4.143 17 N -0.532 5.532 18 Si 0.722 3.278 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.198 1.198 22 H 0.074 0.926 23 H 0.076 0.924 24 H 0.073 0.927 25 H 0.083 0.917 26 H 0.094 0.906 27 H 0.099 0.901 28 H 0.103 0.897 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.038 0.962 35 H 0.035 0.965 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.153 -1.290 -12.476 16.137 hybrid contribution 0.486 -0.468 0.924 1.144 sum -9.668 -1.759 -11.552 15.166 Atomic orbital electron populations 1.21704 0.95110 1.01825 1.01831 1.21839 0.96097 0.96006 1.03131 1.21691 0.81346 0.96804 0.97575 0.90298 1.22817 0.97598 0.98604 0.96982 1.22000 0.95118 1.00565 0.97434 0.87786 1.21586 1.01817 1.02309 0.93103 1.20684 0.88990 0.79882 0.80433 1.90686 1.16432 1.65234 1.68875 1.48585 1.06633 1.40522 1.38161 1.21802 0.94162 0.92836 0.90622 1.19397 0.97196 0.96275 0.89714 1.21093 1.34506 1.02583 0.97867 0.92514 1.25000 0.95930 0.95092 0.98248 1.69972 1.46019 1.17761 1.19453 0.86556 0.80421 0.80673 0.80127 1.20575 1.21205 1.19815 0.92594 0.92372 0.92727 0.91661 0.90603 0.90097 0.89710 0.92573 0.92070 0.91676 0.91501 0.91302 0.96155 0.96502 0.92950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.69 37.15 0.36 -1.05 16 2 C -0.13 -1.63 5.16 -26.73 -0.14 -1.77 16 3 C 0.13 1.83 3.33 -67.01 -0.22 1.61 16 4 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 5 C -0.12 -1.34 5.53 -25.02 -0.14 -1.48 16 6 C -0.13 -1.76 3.54 -90.55 -0.32 -2.08 16 7 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 8 C -0.13 -1.51 9.08 37.16 0.34 -1.17 16 9 C 0.51 9.91 7.45 -10.86 -0.08 9.83 16 10 O -0.54 -12.66 17.44 5.56 0.10 -12.56 16 11 N -0.61 -11.36 2.78 -164.89 -0.46 -11.82 16 12 C 0.13 2.74 5.65 -4.04 -0.02 2.72 16 13 C 0.01 0.32 5.30 -27.88 -0.15 0.18 16 14 C -0.52 -15.03 9.11 -34.44 -0.31 -15.35 16 15 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 16 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 17 N -0.89 -27.40 13.29 55.43 0.74 -26.67 16 18 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 22 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.05 0.44 7.73 -51.93 -0.40 0.04 16 25 H 0.06 0.77 8.01 -51.93 -0.42 0.35 16 26 H 0.08 1.07 6.61 -51.93 -0.34 0.72 16 27 H 0.08 0.79 7.59 -51.93 -0.39 0.40 16 28 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.65 8.13 -51.93 -0.42 0.22 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 1.32 6.28 -51.93 -0.33 1.00 16 33 H 0.07 1.59 7.93 -51.93 -0.41 1.18 16 34 H 0.02 0.61 8.14 -51.92 -0.42 0.19 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 295.26 15.07 4.45 4.45 Total: -1.00 -33.42 295.26 -7.04 -40.46 By element: Atomic # 1 Polarization: 2.19 SS G_CDS: -6.06 Total: -3.87 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: -0.78 Total: -6.93 kcal Atomic # 7 Polarization: -38.76 SS G_CDS: 0.28 Total: -38.48 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: 0.10 Total: -12.56 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -33.42 -7.04 -40.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685973243.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.477 kcal (2) G-P(sol) polarization free energy of solvation -33.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds